AT3G01070

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008382
Physical Location & Seq
Forward (+)
19409 .. 20806
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G01070.1

Sequence Viewer

Length: 504 bp
ATGGCGAGAGTTGCGGTTTTGGTTGCAGGGGCGGTGCTGGCTTTTCTGCTGGCGGCGACGAATGTGACGGCGAAGAGGTGGACGGTGGGTGATAACAAGTTCTGGAATCCTAATATCAACTATACCATTTGGGCTCAGGACAAACATTTCTACCTCGACGATTGGCTCTATTTTGTATATGAGAGAAACCAATACAACGTTATAGAAGTGAACGAGACGAACTACATAAGCTGCAATCCCAATAACCCGATCGCAAATTGGAGTCGTGGAGCTGGAAGGGACTTGGTTCATCTCAATGTGACAAGGCATTACTATCTGATTAGTGGTAATGGTGGTGGATGTTACGGAGGTATGAAGCTCGCTGTTTTAGTTGAGAAACCGCCTCCTCCACCAGCTGCAGCACCTAACAAGAACAGTGCAAGAAGAACCTTCTCGGTCTCCGGTTTTGCCTATCAGTTTCTTATTCCAGTAGCTGTTTTCGCAGCAGTTGGGACACGGTACTGA

Protein Analysis

167

Amino Acids

18.64

Weight (kDa)

9.42

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 35 - 118 1.9e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 14, 32, 53, 380
AclI AACGTT 1 cut(s) 198
AfaI GTAC 1 cut(s) 500
AluBI AGCT 5 cut(s) 231, 272, 358, 395, 473
AluI AGCT 5 cut(s) 231, 272, 358, 395, 473
Alw26I GTCTC 2 cut(s) 209, 442
AlwNI CAGNNNCTG 1 cut(s) 473
ApeKI GCWGC 4 cut(s) 231, 395, 398, 482
AsuHPI GGTGA 1 cut(s) 101
BanII GRGCYC 1 cut(s) 136
BbvI GCAGC 4 cut(s) 218, 382, 410, 494
BceAI ACGGC 1 cut(s) 84
BcoDI GTCTC 2 cut(s) 209, 442
BfmI CTRYAG 1 cut(s) 396
BisI GCNGC 5 cut(s) 54, 232, 396, 399, 483
BlsI GCNGC 5 cut(s) 55, 233, 397, 400, 484
Bpu10I CCTNAGC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 442
BsaWI WCCGGW 1 cut(s) 440
Bse1I ACTGG 1 cut(s) 467
BseGI GGATG 1 cut(s) 344
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 467
BseRI GAGGAG 1 cut(s) 375
BseXI GCAGC 4 cut(s) 218, 382, 410, 494
Bsh1285I CGRYCG 1 cut(s) 252
BsiEI CGRYCG 1 cut(s) 252
BsiSI CCGG 1 cut(s) 441
BslFI GGGAC 1 cut(s) 293
BsmAI GTCTC 2 cut(s) 209, 442
BsmBI CGTCTC 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 293
Bso31I GGTCTC 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 1 cut(s) 249
BspACI CCGC 4 cut(s) 14, 32, 53, 380
BspCNI CTCAG 1 cut(s) 148
BspMAI CTGCAG 1 cut(s) 400
BspTNI GGTCTC 1 cut(s) 442
BsrI ACTGG 1 cut(s) 467
BssMI GATC 1 cut(s) 249
Bst4CI ACNGT 3 cut(s) 85, 416, 498
Bst6I CTCTTC 1 cut(s) 68
BstC8I GCNNGC 3 cut(s) 39, 51, 360
BstDEI CTNAG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 344
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 2 cut(s) 209, 442
BstMBI GATC 1 cut(s) 249
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 3 cut(s) 11, 38, 479
BstSFI CTRYAG 1 cut(s) 396
BstV1I GCAGC 4 cut(s) 218, 382, 410, 494
BtsCI GGATG 1 cut(s) 344
BtsIMutI CAGTG 1 cut(s) 421
Cac8I GCNNGC 3 cut(s) 39, 51, 360
CaiI CAGNNNCTG 1 cut(s) 473
Csp6I GTAC 1 cut(s) 499
CviJI RGCY 8 cut(s) 41, 134, 166, 231, 272, 358, 395, 473
CviKI_1 RGCY 8 cut(s) 41, 134, 166, 231, 272, 358, 395, 473
CviQI GTAC 1 cut(s) 499
DdeI CTNAG 1 cut(s) 135
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Eco24I GRGCYC 1 cut(s) 136
Eco31I GGTCTC 1 cut(s) 442
EcoT38I GRGCYC 1 cut(s) 136
Esp3I CGTCTC 1 cut(s) 209
FaiI YATR 6 cut(s) 123, 178, 180, 203, 227, 353
FaqI GGGAC 1 cut(s) 293
Fnu4HI GCNGC 5 cut(s) 54, 232, 396, 399, 483
FokI GGATG 1 cut(s) 351
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 5 cut(s) 54, 232, 396, 399, 483
GluI GCNGC 5 cut(s) 54, 232, 396, 399, 483
HapII CCGG 1 cut(s) 441
HinfI GANTC 2 cut(s) 106, 262
HpaII CCGG 1 cut(s) 441
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 2 cut(s) 81, 211
Hpy188I TCNGA 1 cut(s) 318
Hpy188III TCNNGA 2 cut(s) 103, 137
Hpy8I GTNNAC 2 cut(s) 81, 211
Hpy99I CGWCG 2 cut(s) 61, 161
HpyAV CCTTC 2 cut(s) 270, 439
HpyCH4III ACNGT 3 cut(s) 85, 416, 498
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 4 cut(s) 26, 234, 398, 419
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 38, 479
HpyF3I CTNAG 1 cut(s) 135
HpySE526I ACGT 1 cut(s) 198
Kzo9I GATC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 9 cut(s) 12, 23, 35, 88, 122, 258, 405, 454, 480
Lsp1109I GCAGC 4 cut(s) 218, 382, 410, 494
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 3 cut(s) 64, 298, 341
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MboII GAAGA 2 cut(s) 85, 435
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 1 cut(s) 256
MlyI GAGTC 1 cut(s) 271
MnlI CCTC 5 cut(s) 69, 164, 341, 393, 396
MslI CAYNNNNRTG 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 1 cut(s) 441
MwoI GCNNNNNNNGC 3 cut(s) 11, 38, 479
NdeII GATC 1 cut(s) 249
NmuCI GTSAC 2 cut(s) 64, 298
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 5 cut(s) 55, 233, 397, 400, 484
Ple19I CGATCG 1 cut(s) 252
PleI GAGTC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 270
Psp1406I AACGTT 1 cut(s) 198
PstI CTGCAG 1 cut(s) 400
PstNI CAGNNNCTG 1 cut(s) 473
PvuI CGATCG 1 cut(s) 252
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 1 cut(s) 500
RsaNI GTAC 1 cut(s) 499
RseI CAYNNNNRTG 1 cut(s) 294
SatI GCNGC 5 cut(s) 54, 232, 396, 399, 483
Sau3AI GATC 1 cut(s) 249
SchI GAGTC 1 cut(s) 271
SduI GDGCHC 1 cut(s) 136
SfcI CTRYAG 1 cut(s) 396
SmiMI CAYNNNNRTG 1 cut(s) 294
Sse9I AATT 1 cut(s) 256
SsiI CCGC 4 cut(s) 14, 32, 53, 380
TaaI ACNGT 3 cut(s) 85, 416, 498
TaiI ACGT 1 cut(s) 201
TaqI TCGA 1 cut(s) 156
TaqII GACCGA 1 cut(s) 424
TasI AATT 1 cut(s) 256
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 1 cut(s) 106
TscAI CASTG 1 cut(s) 421
TseFI GTSAC 2 cut(s) 64, 298
TseI GCWGC 4 cut(s) 231, 395, 398, 482
Tsp45I GTSAC 2 cut(s) 64, 298
TspDTI ATGAA 2 cut(s) 278, 368
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.