Rh2AG593400

Lamin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0008382
Physical Location & Seq
Forward (+)
82473776 .. 82475583
1808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG593400.1

Sequence Viewer

Length: 537 bp
ATGGAGGGGGTGAGAAGAGGGTTTGGGTCTGGTTCAGCTGTGGCGGCTGTGGTGCTTTTGGCCTTGGTTTTGGTAATGGTTCCAGAAGCCTCAGCTGCTCGTATTACTGTGGGAGGTAACAAGGGCTGGTCTCCCAATGTTAACTACACAATTTGGGCGCAAGACAAGCACTTCTACAATGGAGATTGGCTCTTTTTTGTGTATGATAGGAACCAGCAGAATATCCTAGAGGTGAACAAGACAAACTATGAGACATGCAATTCAGATCATCCACTTCACAATTGGACTACGGGAGTTGGAAGAGATGTGGTTCCACTAAATGTGACCAGGCGCTACTATTTCTTGAGTGGCAATGGCTTCTGCTACAGTGGCATGAAGATGGCTATTCAGGTTGAAAAGCTACCTCCACCTCCCAAGGCTGCTCCGGTGGTGAGCAAGGGCAGTGCTCCATTAGCGCCTGTTTTTAGATCCCAATTTGTGTTGCCAGCCATTTTTGCTATTGGTGCAGTTTGGGATGCATTTCTTAGGTTCTGCTAG

Protein Analysis

178

Amino Acids

19.64

Weight (kDa)

9.24

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 43 - 125 2e-22 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 44
AclWI GGATC 1 cut(s) 462
AgsI TTSAA 1 cut(s) 395
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 3 cut(s) 38, 95, 400
AluI AGCT 3 cut(s) 38, 95, 400
Alw21I GWGCWC 1 cut(s) 448
Alw26I GTCTC 2 cut(s) 135, 245
AlwI GGATC 1 cut(s) 462
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 95, 419
AspLEI GCGC 3 cut(s) 160, 333, 457
AsuHPI GGTGA 3 cut(s) 22, 244, 442
Bbv12I GWGCWC 1 cut(s) 448
BbvCI CCTCAGC 1 cut(s) 91
BbvI GCAGC 2 cut(s) 82, 406
BccI CCATC 1 cut(s) 373
BciT130I CCWGG 1 cut(s) 328
BcoDI GTCTC 2 cut(s) 135, 245
BfaI CTAG 2 cut(s) 227, 535
BfmI CTRYAG 1 cut(s) 364
BfoI RGCGCY 2 cut(s) 334, 458
BisI GCNGC 3 cut(s) 45, 96, 420
BlsI GCNGC 3 cut(s) 46, 97, 421
Bme1390I CCNGG 1 cut(s) 328
BmiI GGNNCC 3 cut(s) 81, 212, 312
BmrFI CCNGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 505
BplI GAGNNNNNCTC 2 cut(s) 174, 206
Bpu10I CCTNAGC 1 cut(s) 91
BpuEI CTTGAG 1 cut(s) 364
BsaI GGTCTC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 63, 414
BsaWI WCCGGW 1 cut(s) 424
Bse3DI GCAATG 1 cut(s) 358
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 63, 414
BseGI GGATG 2 cut(s) 268, 520
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 1 cut(s) 105
BseXI GCAGC 2 cut(s) 82, 406
BsgI GTGCAG 1 cut(s) 525
BshFI GGCC 1 cut(s) 62
BsiHKAI GWGCWC 1 cut(s) 448
BsiSI CCGG 1 cut(s) 425
BsmAI GTCTC 2 cut(s) 135, 245
BsnI GGCC 1 cut(s) 62
Bso31I GGTCTC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 448
Bsp143I GATC 2 cut(s) 265, 467
BspACI CCGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 104
BspLI GGNNCC 3 cut(s) 81, 212, 312
BspPI GGATC 1 cut(s) 462
BspTNI GGTCTC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 358
BssECI CCNNGG 2 cut(s) 63, 414
BssMI GATC 2 cut(s) 265, 467
BssT1I CCWWGG 2 cut(s) 63, 414
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 2 cut(s) 109, 368
Bst6I CTCTTC 2 cut(s) 10, 295
BstC8I GCNNGC 1 cut(s) 486
BstDEI CTNAG 2 cut(s) 91, 524
BstF5I GGATG 2 cut(s) 268, 520
BstH2I RGCGCY 2 cut(s) 334, 458
BstHHI GCGC 3 cut(s) 160, 333, 457
BstKTI GATC 2 cut(s) 268, 470
BstMAI GTCTC 2 cut(s) 135, 245
BstMBI GATC 2 cut(s) 265, 467
BstMWI GCNNNNNNNGC 7 cut(s) 44, 95, 166, 369, 452, 494, 503
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 364
BstV1I GCAGC 2 cut(s) 82, 406
BstX2I RGATCY 1 cut(s) 467
BstYI RGATCY 1 cut(s) 467
BsuRI GGCC 1 cut(s) 62
BtsCI GGATG 2 cut(s) 268, 520
BtsI GCAGTG 1 cut(s) 448
BtsIMutI CAGTG 2 cut(s) 373, 448
Cac8I GCNNGC 1 cut(s) 486
CfoI GCGC 3 cut(s) 160, 333, 457
CviAII CATG 2 cut(s) 255, 373
DdeI CTNAG 2 cut(s) 91, 524
DpnI GATC 2 cut(s) 267, 469
DpnII GATC 2 cut(s) 265, 467
Eam1104I CTCTTC 2 cut(s) 10, 295
EarI CTCTTC 2 cut(s) 10, 295
Eco130I CCWWGG 2 cut(s) 63, 414
Eco31I GGTCTC 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 2 cut(s) 63, 414
EcoT22I ATGCAT 1 cut(s) 520
ErhI CCWWGG 2 cut(s) 63, 414
FaeI CATG 2 cut(s) 258, 376
FaiI YATR 4 cut(s) 204, 249, 256, 374
FatI CATG 2 cut(s) 254, 372
Fnu4HI GCNGC 3 cut(s) 45, 96, 420
FokI GGATG 2 cut(s) 255, 527
Fsp4HI GCNGC 3 cut(s) 45, 96, 420
FspBI CTAG 2 cut(s) 227, 535
GlaI GCGC 3 cut(s) 159, 332, 456
GluI GCNGC 3 cut(s) 45, 96, 420
HaeII RGCGCY 2 cut(s) 334, 458
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 425
HhaI GCGC 3 cut(s) 160, 333, 457
Hin1II CATG 2 cut(s) 258, 376
Hin6I GCGC 3 cut(s) 158, 331, 455
HinP1I GCGC 3 cut(s) 158, 331, 455
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HpaI GTTAAC 1 cut(s) 142
HpaII CCGG 1 cut(s) 425
HphI GGTGA 3 cut(s) 22, 244, 442
Hpy166II GTNNAC 2 cut(s) 142, 235
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 2 cut(s) 83, 343
Hpy8I GTNNAC 2 cut(s) 142, 235
HpyCH4III ACNGT 2 cut(s) 109, 368
HpyCH4V TGCA 3 cut(s) 258, 506, 518
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 95, 166, 369, 452, 494, 503
HpyF3I CTNAG 2 cut(s) 91, 524
Hsp92II CATG 2 cut(s) 258, 376
HspAI GCGC 3 cut(s) 158, 331, 455
KspAI GTTAAC 1 cut(s) 142
Kzo9I GATC 2 cut(s) 265, 467
LmnI GCTCC 2 cut(s) 427, 451
Lsp1109I GCAGC 2 cut(s) 82, 406
LweI GCATC 1 cut(s) 505
MaeI CTAG 2 cut(s) 227, 535
MaeIII GTNAC 2 cut(s) 116, 322
MalI GATC 2 cut(s) 267, 469
MboI GATC 2 cut(s) 265, 467
MboII GAAGA 3 cut(s) 27, 312, 388
MfeI CAATTG 1 cut(s) 280
MflI RGATCY 1 cut(s) 467
MhlI GDGCHC 1 cut(s) 448
MluCI AATT 4 cut(s) 150, 259, 280, 473
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 6 cut(s) 11, 100, 107, 223, 414, 420
Mph1103I ATGCAT 1 cut(s) 520
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 377
MspA1I CMGCKG 2 cut(s) 38, 95
MspI CCGG 1 cut(s) 425
MspR9I CCNGG 1 cut(s) 328
MunI CAATTG 1 cut(s) 280
MvaI CCWGG 1 cut(s) 328
MwoI GCNNNNNNNGC 7 cut(s) 44, 95, 166, 369, 452, 494, 503
NdeII GATC 2 cut(s) 265, 467
NlaIII CATG 2 cut(s) 258, 376
NlaIV GGNNCC 3 cut(s) 81, 212, 312
NmuCI GTSAC 1 cut(s) 322
NsiI ATGCAT 1 cut(s) 520
NspI RCATGY 1 cut(s) 258
PkrI GCNGC 3 cut(s) 46, 97, 421
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 3 cut(s) 81, 212, 312
PsuI RGATCY 1 cut(s) 467
PvuII CAGCTG 2 cut(s) 38, 95
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 3 cut(s) 45, 96, 420
Sau3AI GATC 2 cut(s) 265, 467
ScrFI CCNGG 1 cut(s) 328
SduI GDGCHC 1 cut(s) 448
SetI ASST 9 cut(s) 40, 97, 118, 234, 393, 402, 406, 412, 530
SfaNI GCATC 1 cut(s) 505
SfcI CTRYAG 1 cut(s) 364
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 4 cut(s) 150, 259, 280, 473
SsiI CCGC 1 cut(s) 44
SspMI CTAG 2 cut(s) 227, 535
StyD4I CCNGG 1 cut(s) 326
StyI CCWWGG 2 cut(s) 63, 414
TaaI ACNGT 2 cut(s) 109, 368
TasI AATT 4 cut(s) 150, 259, 280, 473
TauI GCSGC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 2 cut(s) 373, 448
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 2 cut(s) 95, 419
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 389
TspRI CASTG 2 cut(s) 373, 448
XceI RCATGY 1 cut(s) 258
XcmI CCANNNNNNNNNTGG 1 cut(s) 279
XspI CTAG 2 cut(s) 227, 535
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.