Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008382

Physical Location & Seq

Genomic Coordinates Reverse (-)

4215249 .. 4217200

Gene Structure 1952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1054500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGAGAAAGAGAGAGCAATGGCGGTGGTGGTGCTTTTGTGCTTGGTGGTGGTGGTGGAACTTCCAGAAGCATCAGCTACGAGATTTATGGTGGGAGGGAAAATGGGTTGGAACAGCAATGTCAACTATACAATTTGGGCTCAGGATAAGCACTTTTACAATGGAGACTGGCTCTCTCAAATGTTCTTGAACCAAATGGATGTTCTAGAGGTGAACCAGACCAACTATGTCTCGTGCAATGCCGAGCATCCCGTTCACAACTGGACCACGGGAGCCGGAAGAGACGTGGTTCCACTGAACGTGACAAGGCACTACTACTTCATTAGTAGCAAGGGGTCCTGCTACGGTGGCATGAAGATCGCTGTTAAGGTCGAAAACATGCCTCCGCCTCCCAAAGCTGCCCCGCTGAAGAGCAAGAGCAGCGTCCTAACACCTTCCCTCAGATCCCAGTTTGTTTTGTCTGCGGTTTTCGCCATTGGCGCAATGTGGGACGCTTTGGTTCGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

170

Amino Acids

18.81

Weight (kDa)

8.79

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	37 - 118	8.2e-18	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01070 AT4G12880 AT4G12880 AT5G15350
fragaria_vesca	FvH4_6g47771
malus_domestica	MD09G1057500.v1.1 MD09G1057600.v1.1 MD17G1054500.v1.1
prunus_persica	Prupe.3G261600_v2.0.a1
pyrus_communis	pycom111g04780 pycom17g05210
rosa_chinensis	RchiOBHm_Chr2g0166941
rosa_multiflora	Rmu_co8238553.1_g000001 Rmu_co8299167.1_g000001 Rmu_sc0002735.1_g000018
rosa_roxburghii	Rroxscaffold_2G00083950 Rroxscaffold_2G00084410
rosa_rugosa	Rorug02G0526500
rosa_samantha	Rh2AG593400 Rh2BG605000 Rh2CG575800 Rh2DG616600
rosa_wichuraiana	Rw2G049410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	23, 386, 404, 464
AclWI	GGATC	1 cut(s)	438
AcuI	CTGAAG	1 cut(s)	428
AgsI	TTSAA	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	286
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	2 cut(s)	77, 398
AluI	AGCT	2 cut(s)	77, 398
Alw26I	GTCTC	3 cut(s)	159, 235, 276
AlwI	GGATC	1 cut(s)	438
ApeKI	GCWGC	2 cut(s)	398, 420
AspLEI	GCGC	1 cut(s)	482
AspS9I	GGNCC	2 cut(s)	264, 336
AsuHPI	GGTGA	1 cut(s)	223
AvaII	GGWCC	2 cut(s)	264, 336
BanII	GRGCYC	1 cut(s)	142
BauI	CACGAG	1 cut(s)	232
BbvI	GCAGC	2 cut(s)	385, 432
BcgI	CGANNNNNNTGC	2 cut(s)	340, 374
BcoDI	GTCTC	3 cut(s)	159, 235, 276
BfaI	CTAG	1 cut(s)	206
BisI	GCNGC	2 cut(s)	399, 421
BlsI	GCNGC	2 cut(s)	400, 422
Bme18I	GGWCC	2 cut(s)	264, 336
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	2 cut(s)	264, 336
BmiI	GGNNCC	3 cut(s)	274, 291, 337
BmrI	ACTGGG	1 cut(s)	442
BmsI	GCATC	2 cut(s)	80, 256
BmuI	ACTGGG	1 cut(s)	442
BplI	GAGNNNNNCTC	2 cut(s)	156, 188
Bpu10I	CCTNAGC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	267
Bse1I	ACTGG	3 cut(s)	173, 266, 448
Bse3DI	GCAATG	4 cut(s)	24, 124, 244, 489
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	205, 247
BseMI	GCAATG	4 cut(s)	24, 124, 244, 489
BseMII	CTCAG	2 cut(s)	155, 454
BseNI	ACTGG	3 cut(s)	173, 266, 448
BseXI	GCAGC	2 cut(s)	385, 432
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	503
BsmAI	GTCTC	3 cut(s)	159, 235, 276
BsmBI	CGTCTC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	503
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	2 cut(s)	357, 443
BspACI	CCGC	4 cut(s)	23, 386, 404, 464
BspCNI	CTCAG	2 cut(s)	154, 453
BspLI	GGNNCC	3 cut(s)	274, 291, 337
BspPI	GGATC	1 cut(s)	438
BspQI	GCTCTTC	1 cut(s)	404
BsrDI	GCAATG	4 cut(s)	24, 124, 244, 489
BsrI	ACTGG	3 cut(s)	173, 266, 448
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	2 cut(s)	357, 443
BssSI	CACGAG	1 cut(s)	232
Bst2BI	CACGAG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	347
Bst6I	CTCTTC	2 cut(s)	274, 404
BstDEI	CTNAG	2 cut(s)	141, 440
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	2 cut(s)	205, 247
BstHHI	GCGC	1 cut(s)	482
BstKTI	GATC	2 cut(s)	360, 446
BstMAI	GTCTC	3 cut(s)	159, 235, 276
BstMBI	GATC	2 cut(s)	357, 443
BstMWI	GCNNNNNNNGC	4 cut(s)	348, 420, 470, 479
BstNSI	RCATGY	1 cut(s)	382
BstV1I	GCAGC	2 cut(s)	385, 432
BstX2I	RGATCY	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	443
BtgI	CCRYGG	1 cut(s)	267
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	2 cut(s)	205, 247
BtsIMutI	CAGTG	1 cut(s)	293
CfoI	GCGC	1 cut(s)	482
Cfr13I	GGNCC	2 cut(s)	264, 336
CseI	GACGC	2 cut(s)	412, 500
CspCI	CAANNNNNGTGG	2 cut(s)	6, 41
CviAII	CATG	2 cut(s)	352, 379
CviJI	RGCY	6 cut(s)	77, 140, 172, 275, 398, 505
CviKI_1	RGCY	6 cut(s)	77, 140, 172, 275, 398, 505
DdeI	CTNAG	2 cut(s)	141, 440
DpnI	GATC	2 cut(s)	359, 445
DpnII	GATC	2 cut(s)	357, 443
Eam1104I	CTCTTC	2 cut(s)	274, 404
EarI	CTCTTC	2 cut(s)	274, 404
EciI	GGCGGA	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	142
Eco47I	GGWCC	2 cut(s)	264, 336
Eco57I	CTGAAG	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	336
EcoT38I	GRGCYC	1 cut(s)	142
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	2 cut(s)	355, 382
FaiI	YATR	5 cut(s)	89, 129, 228, 353, 380
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	2 cut(s)	351, 378
FauI	CCCGC	1 cut(s)	411
Fnu4HI	GCNGC	2 cut(s)	399, 421
FokI	GGATG	2 cut(s)	212, 234
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	2 cut(s)	399, 421
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	481
GluI	GCNGC	2 cut(s)	399, 421
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	2 cut(s)	412, 500
HhaI	GCGC	1 cut(s)	482
Hin1II	CATG	2 cut(s)	355, 382
Hin6I	GCGC	1 cut(s)	480
HinP1I	GCGC	1 cut(s)	480
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	3 cut(s)	124, 214, 256
Hpy188I	TCNGA	1 cut(s)	443
Hpy188III	TCNNGA	4 cut(s)	65, 143, 187, 206
Hpy8I	GTNNAC	3 cut(s)	124, 214, 256
HpyAV	CCTTC	1 cut(s)	444
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	2 cut(s)	285, 300
HpyCH4V	TGCA	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	4 cut(s)	348, 420, 470, 479
HpyF3I	CTNAG	2 cut(s)	141, 440
HpySE526I	ACGT	2 cut(s)	285, 300
Hsp92II	CATG	2 cut(s)	355, 382
HspAI	GCGC	1 cut(s)	480
Kzo9I	GATC	2 cut(s)	357, 443
LguI	GCTCTTC	1 cut(s)	404
LmnI	GCTCC	1 cut(s)	272
LpnPI	CCDG	8 cut(s)	78, 128, 154, 230, 247, 289, 352, 461
Lsp1109I	GCAGC	2 cut(s)	385, 432
LweI	GCATC	2 cut(s)	80, 256
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	2 cut(s)	285, 300
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	2 cut(s)	359, 445
MboI	GATC	2 cut(s)	357, 443
MboII	GAAGA	3 cut(s)	291, 367, 421
MflI	RGATCY	1 cut(s)	443
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	5 cut(s)	89, 202, 393, 399, 449
MseI	TTAA	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	406
MspI	CCGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	4 cut(s)	348, 420, 470, 479
NdeII	GATC	2 cut(s)	357, 443
NlaIII	CATG	2 cut(s)	355, 382
NlaIV	GGNNCC	3 cut(s)	274, 291, 337
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	301
NspI	RCATGY	1 cut(s)	382
PciSI	GCTCTTC	1 cut(s)	404
PkrI	GCNGC	2 cut(s)	400, 422
PpuMI	RGGWCCY	1 cut(s)	336
Psp5II	RGGWCCY	1 cut(s)	336
PspN4I	GGNNCC	3 cut(s)	274, 291, 337
PspPI	GGNCC	2 cut(s)	264, 336
PspPPI	RGGWCCY	1 cut(s)	336
PsuI	RGATCY	1 cut(s)	443
SapI	GCTCTTC	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	2 cut(s)	399, 421
Sau3AI	GATC	2 cut(s)	357, 443
Sau96I	GGNCC	2 cut(s)	264, 336
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	7 cut(s)	79, 213, 288, 303, 372, 400, 436
SfaNI	GCATC	2 cut(s)	80, 256
SinI	GGWCC	2 cut(s)	264, 336
Sse9I	AATT	1 cut(s)	132
SsiI	CCGC	4 cut(s)	23, 386, 404, 464
SspMI	CTAG	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	2 cut(s)	288, 303
TaqI	TCGA	1 cut(s)	372
TasI	AATT	1 cut(s)	132
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	2 cut(s)	398, 420
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	2 cut(s)	310, 368
TspRI	CASTG	1 cut(s)	300
VpaK11BI	GGWCC	2 cut(s)	264, 336
XbaI	TCTAGA	1 cut(s)	205
XceI	RCATGY	1 cut(s)	382
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.