AT4G12880

Lamin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0008382
Physical Location & Seq
Reverse (-)
7544381 .. 7545512
1132 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G12880.1

Sequence Viewer

Length: 426 bp
ATGGGGAGATCTATGGTGCTAATCTCGGCGGTTGTACTGGCTTTTCTAGTGGCGGCGCCGATACCAGAAGTAACAGCCAAGAAATATTTAGTCGGCGACAAAAAGTTCTGGAACCCCAACATTAACTATACCCTATGGGCTCAAGGCAAACATTTCTACGTCGGAGACTGGCTTTATTTTGTGTTCTATAGAGACCAACACAACATTCTTGAGGTAAACAAGGCTGATTATGAAAAATGTATCTCCAACCGCCCAATACGTAATTATACACGTGGAGCTGGGAGAGATATTGTTCCTCTCTATGAGACTAGACGTTATTATCTACTTGATGGAAGAGGTGGTTGCGTTCAAGGCATGAAGCTAGATGTTTTAGTTGAGACTCCTCCTCCTCCTCCTCCTTTTACTCCTCCTCCTCCAGCACAATAA

Protein Analysis

141

Amino Acids

16.13

Weight (kDa)

9.25

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 37 - 119 1.1e-26 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 55
AciI CCGC 3 cut(s) 29, 53, 250
AcvI CACGTG 1 cut(s) 272
AcyI GRCGYC 1 cut(s) 56
AfaI GTAC 1 cut(s) 36
AflIII ACRYGT 1 cut(s) 269
AgsI TTSAA 1 cut(s) 350
AjuI GAANNNNNNNTTGG 2 cut(s) 189, 221
AluBI AGCT 2 cut(s) 278, 361
AluI AGCT 2 cut(s) 278, 361
Alw26I GTCTC 4 cut(s) 159, 186, 299, 371
AspLEI GCGC 1 cut(s) 58
BanI GGYRCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 142
BbrPI CACGTG 1 cut(s) 272
BccI CCATC 1 cut(s) 323
BcoDI GTCTC 4 cut(s) 159, 186, 299, 371
BfaI CTAG 3 cut(s) 47, 309, 362
BfmI CTRYAG 1 cut(s) 187
BfoI RGCGCY 1 cut(s) 59
BglII AGATCT 1 cut(s) 8
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmiI GGNNCC 2 cut(s) 57, 113
BpmI CTGGAG 1 cut(s) 399
BpuEI CTTGAG 2 cut(s) 126, 230
BsaAI YACGTR 2 cut(s) 260, 272
BsaHI GRCGYC 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 186
BsaXI ACNNNNNCTCC 4 cut(s) 370, 394, 400, 424
Bse1I ACTGG 2 cut(s) 42, 173
BseNI ACTGG 2 cut(s) 42, 173
BseRI GAGGAG 8 cut(s) 372, 375, 378, 381, 384, 396, 399, 402
BseYI CCCAGC 1 cut(s) 278
BshNI GGYRCC 1 cut(s) 55
BsmAI GTCTC 4 cut(s) 159, 186, 299, 371
Bso31I GGTCTC 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 1 cut(s) 8
BspACI CCGC 3 cut(s) 29, 53, 250
BspLI GGNNCC 2 cut(s) 57, 113
BspT107I GGYRCC 1 cut(s) 55
BspTNI GGTCTC 1 cut(s) 186
BsrI ACTGG 2 cut(s) 42, 173
BssMI GATC 1 cut(s) 8
BssNI GRCGYC 1 cut(s) 56
Bst6I CTCTTC 1 cut(s) 328
BstACI GRCGYC 1 cut(s) 56
BstBAI YACGTR 2 cut(s) 260, 272
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 1 cut(s) 11
BstMAI GTCTC 4 cut(s) 159, 186, 299, 371
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 1 cut(s) 351
BstSFI CTRYAG 1 cut(s) 187
BstSNI TACGTA 1 cut(s) 260
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
CfoI GCGC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 35
CviAII CATG 1 cut(s) 355
CviJI RGCY 7 cut(s) 41, 77, 140, 172, 224, 278, 361
CviKI_1 RGCY 7 cut(s) 41, 77, 140, 172, 224, 278, 361
CviQI GTAC 1 cut(s) 35
DinI GGCGCC 1 cut(s) 57
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
Eco105I TACGTA 1 cut(s) 260
Eco24I GRGCYC 1 cut(s) 142
Eco31I GGTCTC 1 cut(s) 186
Eco72I CACGTG 1 cut(s) 272
EcoT38I GRGCYC 1 cut(s) 142
EgeI GGCGCC 1 cut(s) 57
EheI GGCGCC 1 cut(s) 57
FaeI CATG 1 cut(s) 358
FaiI YATR 8 cut(s) 14, 129, 136, 189, 231, 267, 303, 356
FatI CATG 1 cut(s) 354
Fnu4HI GCNGC 1 cut(s) 54
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 3 cut(s) 47, 309, 362
GlaI GCGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 54
GsaI CCCAGC 1 cut(s) 282
GsuI CTGGAG 1 cut(s) 399
HaeII RGCGCY 1 cut(s) 59
HhaI GCGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 1 cut(s) 358
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HinfI GANTC 1 cut(s) 379
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 164
Hpy188III TCNNGA 2 cut(s) 109, 209
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 1 cut(s) 164
HpyCH4IV ACGT 4 cut(s) 159, 259, 271, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 351
HpySE526I ACGT 4 cut(s) 159, 259, 271, 313
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 1 cut(s) 358
HspAI GCGC 1 cut(s) 56
KasI GGCGCC 1 cut(s) 55
Kzo9I GATC 1 cut(s) 8
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 5 cut(s) 23, 78, 94, 154, 264
MaeI CTAG 3 cut(s) 47, 309, 362
MaeII ACGT 4 cut(s) 159, 259, 271, 313
MaeIII GTNAC 1 cut(s) 70
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 1 cut(s) 345
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 1 cut(s) 262
Mly113I GGCGCC 1 cut(s) 56
MlyI GAGTC 1 cut(s) 373
MmeI TCCRAC 2 cut(s) 142, 270
MseI TTAA 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 351
NarI GGCGCC 1 cut(s) 56
NdeII GATC 1 cut(s) 8
NlaIII CATG 1 cut(s) 358
NlaIV GGNNCC 2 cut(s) 57, 113
NmeAIII GCCGAG 1 cut(s) 5
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 373
PluTI GGCGCC 1 cut(s) 59
PmaCI CACGTG 1 cut(s) 272
PmlI CACGTG 1 cut(s) 272
PpsI GAGTC 1 cut(s) 373
Ppu21I YACGTR 2 cut(s) 260, 272
PspCI CACGTG 1 cut(s) 272
PspFI CCCAGC 1 cut(s) 278
PspN4I GGNNCC 2 cut(s) 57, 113
PsuI RGATCY 1 cut(s) 8
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 1 cut(s) 8
SchI GAGTC 1 cut(s) 373
SduI GDGCHC 1 cut(s) 142
SetI ASST 8 cut(s) 162, 216, 262, 274, 280, 316, 340, 363
SfcI CTRYAG 1 cut(s) 187
SfoI GGCGCC 1 cut(s) 57
SmlI CTYRAG 2 cut(s) 141, 209
SmoI CTYRAG 2 cut(s) 141, 209
SnaBI TACGTA 1 cut(s) 260
Sse9I AATT 1 cut(s) 262
SsiI CCGC 3 cut(s) 29, 53, 250
SspDI GGCGCC 1 cut(s) 55
SspI AATATT 1 cut(s) 86
SspMI CTAG 3 cut(s) 47, 309, 362
TaiI ACGT 4 cut(s) 162, 262, 274, 316
TasI AATT 1 cut(s) 262
TatI WGTACW 1 cut(s) 34
TauI GCSGC 1 cut(s) 56
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TspDTI ATGAA 2 cut(s) 246, 371
XspI CTAG 3 cut(s) 47, 309, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.