Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8238553.1

Orthogroup ID

OG0008382

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 387

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8238553.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 328 bp

gaaccagcagaatattctagaggtgaacaagacagactatgaggcatgcaattcagatcatccacttcacaattggactacaggagctggaagagatgtggttccactaaatgtgaccaggcgctactatttcttgagcggcaagggcttctgctacagtggcatgaagttggctattcacgttgaaaacccacctccacctcccaaggctgctccggtggtgagcgagggcagcgctccattagcgcctgtttttagatcccaatttgtgttgccagccatttttgctattggtgcagtttgggatgcatttcttaggttctgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

108

Amino Acids

11.9

Weight (kDa)

7.93

Isoelectric Point (pI)

53.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01070 AT4G12880 AT4G12880 AT5G15350
fragaria_vesca	FvH4_6g47771
malus_domestica	MD09G1057500.v1.1 MD09G1057600.v1.1 MD17G1054500.v1.1
prunus_persica	Prupe.3G261600_v2.0.a1
pyrus_communis	pycom111g04780 pycom17g05210
rosa_chinensis	RchiOBHm_Chr2g0166941
rosa_multiflora	Rmu_co8238553.1_g000001 Rmu_co8299167.1_g000001 Rmu_sc0002735.1_g000018
rosa_roxburghii	Rroxscaffold_2G00083950 Rroxscaffold_2G00084410
rosa_rugosa	Rorug02G0526500
rosa_samantha	Rh2AG593400 Rh2BG605000 Rh2CG575800 Rh2DG616600
rosa_wichuraiana	Rw2G049410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	139
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	1 cut(s)	253
AfeI	AGCGCT	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	186
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	1 cut(s)	87
AluI	AGCT	1 cut(s)	87
AlwI	GGATC	1 cut(s)	253
AlwNI	CAGNNNCTG	1 cut(s)	87
Aor51HI	AGCGCT	1 cut(s)	236
ApeKI	GCWGC	2 cut(s)	210, 232
AspLEI	GCGC	3 cut(s)	124, 237, 248
AsuHPI	GGTGA	2 cut(s)	35, 233
BbvI	GCAGC	2 cut(s)	197, 244
BciT130I	CCWGG	1 cut(s)	119
BfaI	CTAG	2 cut(s)	18, 326
BfmI	CTRYAG	2 cut(s)	79, 155
BfoI	RGCGCY	3 cut(s)	125, 238, 249
BisI	GCNGC	3 cut(s)	140, 211, 233
BlsI	GCNGC	3 cut(s)	141, 212, 234
Bme1390I	CCNGG	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	205
BsaWI	WCCGGW	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	2 cut(s)	59, 311
BseXI	GCAGC	2 cut(s)	197, 244
BsgI	GTGCAG	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	56, 258
BspACI	CCGC	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	103
BspPI	GGATC	1 cut(s)	253
BsrBI	CCGCTC	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	2 cut(s)	56, 258
BssT1I	CCWWGG	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	159
Bst6I	CTCTTC	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	47, 277
BstDEI	CTNAG	1 cut(s)	315
BstF5I	GGATG	2 cut(s)	59, 311
BstH2I	RGCGCY	3 cut(s)	125, 238, 249
BstHHI	GCGC	3 cut(s)	124, 237, 248
BstKTI	GATC	2 cut(s)	59, 261
BstMBI	GATC	2 cut(s)	56, 258
BstMWI	GCNNNNNNNGC	6 cut(s)	145, 160, 232, 243, 285, 294
BstNI	CCWGG	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	2 cut(s)	79, 155
BstV1I	GCAGC	2 cut(s)	197, 244
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BtsCI	GGATG	2 cut(s)	59, 311
BtsIMutI	CAGTG	1 cut(s)	164
Cac8I	GCNNGC	2 cut(s)	47, 277
CaiI	CAGNNNCTG	1 cut(s)	87
CfoI	GCGC	3 cut(s)	124, 237, 248
CviAII	CATG	2 cut(s)	46, 164
CviJI	RGCY	5 cut(s)	87, 148, 174, 210, 279
CviKI_1	RGCY	5 cut(s)	87, 148, 174, 210, 279
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	2 cut(s)	58, 260
DpnII	GATC	2 cut(s)	56, 258
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	205
Eco47III	AGCGCT	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	205
EcoT22I	ATGCAT	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	2 cut(s)	49, 167
FaiI	YATR	3 cut(s)	40, 47, 165
FatI	CATG	2 cut(s)	45, 163
Fnu4HI	GCNGC	3 cut(s)	140, 211, 233
FokI	GGATG	2 cut(s)	46, 318
Fsp4HI	GCNGC	3 cut(s)	140, 211, 233
FspBI	CTAG	2 cut(s)	18, 326
GlaI	GCGC	3 cut(s)	123, 236, 247
GluI	GCNGC	3 cut(s)	140, 211, 233
HaeII	RGCGCY	3 cut(s)	125, 238, 249
HapII	CCGG	1 cut(s)	216
HhaI	GCGC	3 cut(s)	124, 237, 248
Hin1II	CATG	2 cut(s)	49, 167
Hin6I	GCGC	3 cut(s)	122, 235, 246
HinP1I	GCGC	3 cut(s)	122, 235, 246
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	2 cut(s)	35, 233
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	1 cut(s)	56
Hpy188III	TCNNGA	2 cut(s)	18, 134
Hpy8I	GTNNAC	1 cut(s)	26
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	3 cut(s)	49, 297, 309
HpyF10VI	GCNNNNNNNGC	6 cut(s)	145, 160, 232, 243, 285, 294
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	2 cut(s)	49, 167
HspAI	GCGC	3 cut(s)	122, 235, 246
Kzo9I	GATC	2 cut(s)	56, 258
LmnI	GCTCC	3 cut(s)	84, 218, 242
LpnPI	CCDG	8 cut(s)	18, 67, 73, 104, 131, 229, 262, 289
Lsp1109I	GCAGC	2 cut(s)	197, 244
LweI	GCATC	1 cut(s)	296
MaeI	CTAG	2 cut(s)	18, 326
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	2 cut(s)	58, 260
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	2 cut(s)	56, 258
MboII	GAAGA	1 cut(s)	103
MfeI	CAATTG	1 cut(s)	71
MflI	RGATCY	1 cut(s)	258
MluCI	AATT	3 cut(s)	50, 71, 264
MnlI	CCTC	5 cut(s)	14, 35, 205, 211, 221
Mph1103I	ATGCAT	1 cut(s)	311
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	119
MunI	CAATTG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	6 cut(s)	145, 160, 232, 243, 285, 294
NdeII	GATC	2 cut(s)	56, 258
NlaIII	CATG	2 cut(s)	49, 167
NlaIV	GGNNCC	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	311
NspI	RCATGY	1 cut(s)	49
PaeI	GCATGC	1 cut(s)	49
PkrI	GCNGC	3 cut(s)	141, 212, 234
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	103
PstNI	CAGNNNCTG	1 cut(s)	87
PsuI	RGATCY	1 cut(s)	258
SatI	GCNGC	3 cut(s)	140, 211, 233
Sau3AI	GATC	2 cut(s)	56, 258
ScrFI	CCNGG	1 cut(s)	119
SetI	ASST	6 cut(s)	25, 89, 184, 197, 203, 321
SfaNI	GCATC	1 cut(s)	296
SfcI	CTRYAG	2 cut(s)	79, 155
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SphI	GCATGC	1 cut(s)	49
Sse9I	AATT	3 cut(s)	50, 71, 264
SsiI	CCGC	1 cut(s)	139
SspI	AATATT	1 cut(s)	14
SspMI	CTAG	2 cut(s)	18, 326
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	159
TaiI	ACGT	1 cut(s)	184
TasI	AATT	3 cut(s)	50, 71, 264
TauI	GCSGC	1 cut(s)	142
TscAI	CASTG	1 cut(s)	164
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	2 cut(s)	210, 232
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	180
TspRI	CASTG	1 cut(s)	164
XbaI	TCTAGA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70
XspI	CTAG	2 cut(s)	18, 326
Zsp2I	ATGCAT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.