Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8299167.1

Orthogroup ID

OG0008382

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 720

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8299167.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 193 bp

atggagagggtgagaagagggtttgggtctggttcagctatggcggctgtggtgcttttggccttggtttttatcatggttccagaagcctcagctactcgttttattgtgggaggtaataagggctggactaccaatgttaactacacaatctgggcccagggcatgcacttctacaatggagattggctct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

64

Amino Acids

7.07

Weight (kDa)

9.69

Isoelectric Point (pI)

31.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01070 AT4G12880 AT4G12880 AT5G15350
fragaria_vesca	FvH4_6g47771
malus_domestica	MD09G1057500.v1.1 MD09G1057600.v1.1 MD17G1054500.v1.1
prunus_persica	Prupe.3G261600_v2.0.a1
pyrus_communis	pycom111g04780 pycom17g05210
rosa_chinensis	RchiOBHm_Chr2g0166941
rosa_multiflora	Rmu_co8238553.1_g000001 Rmu_co8299167.1_g000001 Rmu_sc0002735.1_g000018
rosa_roxburghii	Rroxscaffold_2G00083950 Rroxscaffold_2G00084410
rosa_rugosa	Rorug02G0526500
rosa_samantha	Rh2AG593400 Rh2BG605000 Rh2CG575800 Rh2DG616600
rosa_wichuraiana	Rw2G049410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	44
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	2 cut(s)	38, 95
AluI	AGCT	2 cut(s)	38, 95
AoxI	GGCC	2 cut(s)	60, 156
ApaI	GGGCCC	1 cut(s)	160
AspS9I	GGNCC	2 cut(s)	156, 157
AsuHPI	GGTGA	1 cut(s)	22
BaeGI	GKGCMC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	160
BbvCI	CCTCAGC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	161
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	156, 157
BmiI	GGNNCC	2 cut(s)	81, 158
BmrFI	CCNGG	1 cut(s)	161
BplI	GAGNNNNNCTC	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	91
BsaJI	CCNNGG	3 cut(s)	63, 159, 160
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	3 cut(s)	63, 159, 160
BseMII	CTCAG	1 cut(s)	105
BseSI	GKGCMC	1 cut(s)	160
BshFI	GGCC	2 cut(s)	62, 158
BsnI	GGCC	2 cut(s)	62, 158
Bsp120I	GGGCCC	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	160
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	2 cut(s)	62, 158
BspCNI	CTCAG	1 cut(s)	104
BspLI	GGNNCC	2 cut(s)	81, 158
BssECI	CCNNGG	3 cut(s)	63, 159, 160
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	1 cut(s)	161
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	160
BsuRI	GGCC	2 cut(s)	62, 158
Cac8I	GCNNGC	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	156, 157
CviAII	CATG	2 cut(s)	76, 166
CviJI	RGCY	8 cut(s)	38, 47, 62, 89, 95, 126, 158, 190
CviKI_1	RGCY	8 cut(s)	38, 47, 62, 89, 95, 126, 158, 190
DdeI	CTNAG	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	2 cut(s)	79, 169
FaiI	YATR	3 cut(s)	41, 77, 167
FatI	CATG	2 cut(s)	75, 165
Fnu4HI	GCNGC	1 cut(s)	45
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	62, 158
Hin1II	CATG	2 cut(s)	79, 169
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HpaI	GTTAAC	1 cut(s)	142
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	142
HpyCH4V	TGCA	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	1 cut(s)	91
Hsp92II	CATG	2 cut(s)	79, 169
KspAI	GTTAAC	1 cut(s)	142
LpnPI	CCDG	6 cut(s)	15, 96, 112, 139, 146, 173
MboII	GAAGA	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	160
MnlI	CCTC	3 cut(s)	11, 100, 107
MseI	TTAA	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	44
NlaIII	CATG	2 cut(s)	79, 169
NlaIV	GGNNCC	2 cut(s)	81, 158
NspI	RCATGY	1 cut(s)	169
PaeI	GCATGC	1 cut(s)	169
PasI	CCCWGGG	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	81, 158
PspOMI	GGGCCC	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	156, 157
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	1 cut(s)	45
Sau96I	GGNCC	2 cut(s)	156, 157
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	3 cut(s)	40, 97, 118
SphI	GCATGC	1 cut(s)	169
SsiI	CCGC	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	63
TauI	GCSGC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
XceI	RCATGY	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.