Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008382

Physical Location & Seq

Genomic Coordinates Forward (+)

75564113 .. 75565295

Gene Structure 1183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG575800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAGAGGGTGAGAAGAGGGTTTGGGTCTGGTTCAGCTATGGCGGCTGTGGTGCTTTTGGCCTTGGTTTTTATCATGGTTCCAGAAGCCTCAGCTACTCGTTTTATTGTGGGAGGTAATAAGGGCTGGACTACCAATGTTAACTACACAATCTGGGCCCAGGGCATGCACTTCTACAATGGAGATTGGCTCTTTTTTGTGTACGATAGGAACCAGCAGAATATTCTAGAGGTGAACAAGACAGACTATGAGGCATGCAATTCAGATCATCCACTTCACAATTGGACTACAGGAGCTGGAAGAGATGTGGTTCCACTAAATGTGACCAGGCGCTACTATTTCTTGAGCGGCAAGGGCTTCTGCTACAGTGGCATGAAGTTGGCTATTCACGTTGAAAACCCACCTCCACCTCCCAAGGCTGCTCCGGTGGTGAGCGAGGGCAGCGCTCCATTAGCGCCTGTTTTTAGATCCCAATTTGTGTTGCCAGCCATTTTTGCTATTGGTGCAGTTTGGGATGCATTTCTTAGGTTCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

178

Amino Acids

19.78

Weight (kDa)

8.84

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	43 - 125	4.3e-23	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01070 AT4G12880 AT4G12880 AT5G15350
fragaria_vesca	FvH4_6g47771
malus_domestica	MD09G1057500.v1.1 MD09G1057600.v1.1 MD17G1054500.v1.1
prunus_persica	Prupe.3G261600_v2.0.a1
pyrus_communis	pycom111g04780 pycom17g05210
rosa_chinensis	RchiOBHm_Chr2g0166941
rosa_multiflora	Rmu_co8238553.1_g000001 Rmu_co8299167.1_g000001 Rmu_sc0002735.1_g000018
rosa_roxburghii	Rroxscaffold_2G00083950 Rroxscaffold_2G00084410
rosa_rugosa	Rorug02G0526500
rosa_samantha	Rh2AG593400 Rh2BG605000 Rh2CG575800 Rh2DG616600
rosa_wichuraiana	Rw2G049410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	348
AciI	CCGC	2 cut(s)	44, 348
AclWI	GGATC	1 cut(s)	462
AfaI	GTAC	1 cut(s)	203
AfeI	AGCGCT	1 cut(s)	445
AgsI	TTSAA	1 cut(s)	395
AjnI	CCWGG	2 cut(s)	159, 326
AluBI	AGCT	3 cut(s)	38, 95, 296
AluI	AGCT	3 cut(s)	38, 95, 296
AlwI	GGATC	1 cut(s)	462
AlwNI	CAGNNNCTG	1 cut(s)	296
Aor51HI	AGCGCT	1 cut(s)	445
AoxI	GGCC	2 cut(s)	60, 156
ApaI	GGGCCC	1 cut(s)	160
ApeKI	GCWGC	2 cut(s)	419, 441
AspLEI	GCGC	3 cut(s)	333, 446, 457
AspS9I	GGNCC	2 cut(s)	156, 157
AsuHPI	GGTGA	3 cut(s)	22, 244, 442
BaeGI	GKGCMC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	160
BbvCI	CCTCAGC	1 cut(s)	91
BbvI	GCAGC	2 cut(s)	406, 453
BciT130I	CCWGG	2 cut(s)	161, 328
BfaI	CTAG	2 cut(s)	227, 535
BfmI	CTRYAG	2 cut(s)	288, 364
BfoI	RGCGCY	3 cut(s)	334, 447, 458
BisI	GCNGC	4 cut(s)	45, 349, 420, 442
BlsI	GCNGC	4 cut(s)	46, 350, 421, 443
Bme1390I	CCNGG	2 cut(s)	161, 328
BmgT120I	GGNCC	2 cut(s)	156, 157
BmiI	GGNNCC	4 cut(s)	81, 158, 212, 312
BmrFI	CCNGG	2 cut(s)	161, 328
BmsI	GCATC	1 cut(s)	505
BplI	GAGNNNNNCTC	2 cut(s)	174, 206
Bpu10I	CCTNAGC	1 cut(s)	91
BpuEI	CTTGAG	1 cut(s)	364
BsaJI	CCNNGG	4 cut(s)	63, 159, 160, 414
BsaWI	WCCGGW	1 cut(s)	424
BseBI	CCWGG	2 cut(s)	161, 328
BseDI	CCNNGG	4 cut(s)	63, 159, 160, 414
BseGI	GGATG	2 cut(s)	268, 520
BseMII	CTCAG	1 cut(s)	105
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	2 cut(s)	406, 453
BsgI	GTGCAG	1 cut(s)	525
BshFI	GGCC	2 cut(s)	62, 158
BsiSI	CCGG	1 cut(s)	425
BsnI	GGCC	2 cut(s)	62, 158
Bsp120I	GGGCCC	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	265, 467
BspACI	CCGC	2 cut(s)	44, 348
BspANI	GGCC	2 cut(s)	62, 158
BspCNI	CTCAG	1 cut(s)	104
BspLI	GGNNCC	4 cut(s)	81, 158, 212, 312
BspPI	GGATC	1 cut(s)	462
BsrBI	CCGCTC	1 cut(s)	348
BssECI	CCNNGG	4 cut(s)	63, 159, 160, 414
BssMI	GATC	2 cut(s)	265, 467
BssT1I	CCWWGG	2 cut(s)	63, 414
Bst2UI	CCWGG	2 cut(s)	161, 328
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	2 cut(s)	10, 295
BstC8I	GCNNGC	3 cut(s)	167, 256, 486
BstDEI	CTNAG	2 cut(s)	91, 524
BstF5I	GGATG	2 cut(s)	268, 520
BstH2I	RGCGCY	3 cut(s)	334, 447, 458
BstHHI	GCGC	3 cut(s)	333, 446, 457
BstKTI	GATC	2 cut(s)	268, 470
BstMBI	GATC	2 cut(s)	265, 467
BstMWI	GCNNNNNNNGC	7 cut(s)	44, 354, 369, 441, 452, 494, 503
BstNI	CCWGG	2 cut(s)	161, 328
BstNSI	RCATGY	2 cut(s)	169, 258
BstSCI	CCNGG	2 cut(s)	159, 326
BstSFI	CTRYAG	2 cut(s)	288, 364
BstSLI	GKGCMC	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	406, 453
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
BsuRI	GGCC	2 cut(s)	62, 158
BtsCI	GGATG	2 cut(s)	268, 520
BtsIMutI	CAGTG	1 cut(s)	373
Cac8I	GCNNGC	3 cut(s)	167, 256, 486
CaiI	CAGNNNCTG	1 cut(s)	296
CfoI	GCGC	3 cut(s)	333, 446, 457
Cfr13I	GGNCC	2 cut(s)	156, 157
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	4 cut(s)	76, 166, 255, 373
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	2 cut(s)	91, 524
DpnI	GATC	2 cut(s)	267, 469
DpnII	GATC	2 cut(s)	265, 467
Eam1104I	CTCTTC	2 cut(s)	10, 295
EarI	CTCTTC	2 cut(s)	10, 295
Eco130I	CCWWGG	2 cut(s)	63, 414
Eco24I	GRGCYC	1 cut(s)	160
Eco47III	AGCGCT	1 cut(s)	445
EcoRII	CCWGG	2 cut(s)	159, 326
EcoT14I	CCWWGG	2 cut(s)	63, 414
EcoT22I	ATGCAT	1 cut(s)	520
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	2 cut(s)	63, 414
FaeI	CATG	4 cut(s)	79, 169, 258, 376
FaiI	YATR	6 cut(s)	41, 77, 167, 249, 256, 374
FatI	CATG	4 cut(s)	75, 165, 254, 372
Fnu4HI	GCNGC	4 cut(s)	45, 349, 420, 442
FokI	GGATG	2 cut(s)	255, 527
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	4 cut(s)	45, 349, 420, 442
FspBI	CTAG	2 cut(s)	227, 535
GlaI	GCGC	3 cut(s)	332, 445, 456
GluI	GCNGC	4 cut(s)	45, 349, 420, 442
HaeII	RGCGCY	3 cut(s)	334, 447, 458
HaeIII	GGCC	2 cut(s)	62, 158
HapII	CCGG	1 cut(s)	425
HhaI	GCGC	3 cut(s)	333, 446, 457
Hin1II	CATG	4 cut(s)	79, 169, 258, 376
Hin6I	GCGC	3 cut(s)	331, 444, 455
HinP1I	GCGC	3 cut(s)	331, 444, 455
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HpaI	GTTAAC	1 cut(s)	142
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	3 cut(s)	22, 244, 442
Hpy166II	GTNNAC	3 cut(s)	142, 202, 235
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	3 cut(s)	83, 227, 343
Hpy8I	GTNNAC	3 cut(s)	142, 202, 235
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	4 cut(s)	169, 258, 506, 518
HpyF10VI	GCNNNNNNNGC	7 cut(s)	44, 354, 369, 441, 452, 494, 503
HpyF3I	CTNAG	2 cut(s)	91, 524
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	4 cut(s)	79, 169, 258, 376
HspAI	GCGC	3 cut(s)	331, 444, 455
KspAI	GTTAAC	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	265, 467
LmnI	GCTCC	3 cut(s)	293, 427, 451
Lsp1109I	GCAGC	2 cut(s)	406, 453
LweI	GCATC	1 cut(s)	505
MaeI	CTAG	2 cut(s)	227, 535
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	2 cut(s)	267, 469
MbiI	CCGCTC	1 cut(s)	348
MboI	GATC	2 cut(s)	265, 467
MboII	GAAGA	2 cut(s)	27, 312
MfeI	CAATTG	1 cut(s)	280
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	3 cut(s)	259, 280, 473
MnlI	CCTC	8 cut(s)	11, 100, 107, 223, 244, 414, 420, 430
Mph1103I	ATGCAT	1 cut(s)	520
MseI	TTAA	1 cut(s)	141
MspI	CCGG	1 cut(s)	425
MspR9I	CCNGG	2 cut(s)	161, 328
MunI	CAATTG	1 cut(s)	280
MvaI	CCWGG	2 cut(s)	161, 328
MwoI	GCNNNNNNNGC	7 cut(s)	44, 354, 369, 441, 452, 494, 503
NdeII	GATC	2 cut(s)	265, 467
NlaIII	CATG	4 cut(s)	79, 169, 258, 376
NlaIV	GGNNCC	4 cut(s)	81, 158, 212, 312
NmuCI	GTSAC	1 cut(s)	322
NsiI	ATGCAT	1 cut(s)	520
NspI	RCATGY	2 cut(s)	169, 258
PaeI	GCATGC	2 cut(s)	169, 258
PasI	CCCWGGG	1 cut(s)	160
PkrI	GCNGC	4 cut(s)	46, 350, 421, 443
Psp6I	CCWGG	2 cut(s)	159, 326
PspGI	CCWGG	2 cut(s)	159, 326
PspN4I	GGNNCC	4 cut(s)	81, 158, 212, 312
PspOMI	GGGCCC	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	156, 157
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	467
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	4 cut(s)	45, 349, 420, 442
Sau3AI	GATC	2 cut(s)	265, 467
Sau96I	GGNCC	2 cut(s)	156, 157
ScrFI	CCNGG	2 cut(s)	161, 328
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	9 cut(s)	40, 97, 118, 234, 298, 393, 406, 412, 530
SfaNI	GCATC	1 cut(s)	505
SfcI	CTRYAG	2 cut(s)	288, 364
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
SphI	GCATGC	2 cut(s)	169, 258
Sse9I	AATT	3 cut(s)	259, 280, 473
SsiI	CCGC	2 cut(s)	44, 348
SspI	AATATT	1 cut(s)	223
SspMI	CTAG	2 cut(s)	227, 535
StyD4I	CCNGG	2 cut(s)	159, 326
StyI	CCWWGG	2 cut(s)	63, 414
TaaI	ACNGT	1 cut(s)	368
TaiI	ACGT	1 cut(s)	393
TasI	AATT	3 cut(s)	259, 280, 473
TauI	GCSGC	2 cut(s)	47, 351
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	2 cut(s)	419, 441
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	1 cut(s)	389
TspRI	CASTG	1 cut(s)	373
XbaI	TCTAGA	1 cut(s)	226
XceI	RCATGY	2 cut(s)	169, 258
XcmI	CCANNNNNNNNNTGG	1 cut(s)	279
XspI	CTAG	2 cut(s)	227, 535
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.