Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0008382

Physical Location & Seq

Genomic Coordinates Reverse (-)

2898898 .. 2900306

Gene Structure 1409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAGAAAGAGAGAGCTGCGGCGGTGGTGGTGCTTTTGTGCTTGGTGGTGGTGATGGAACTTCCAGAAGCATCAGCTACGAGATATATGGTGGGAGGGAAAATGGGTTGGACCAGCAATGTCAACTATACTATTTGGGCTCAGGATCAGCACTTTTACAATGGAGACTGGCTCTTTTTTGTTTATGATAGGAACCAAATGGATGTTATAGAGGTGAACCAGACAAACTATGTCTCGTGCAATGCTGAACATCCCCTACATAACTGGACCACTGGAGCCGGAAGAGATGTGGTTCCGCTGAATGTGACAAGGGACTACTACTTCATTACTAGCAAGGGGTACTGCTATGGTGGCATGAAGCTCGCCGTTAAAGTTGAAAACATGCCTCCACCCCCCGAGGCTGCCCCAGTGAAGAGCAAGAGCAGTGACCTAACACCCGCTTCCCAGTTTGTTTTGCCCGCAGTCTTCGCCATCGGGGCAATGTGGGACGCTTTAGTTCGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

169

Amino Acids

18.82

Weight (kDa)

5.55

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	37 - 119	6.3e-21	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01070 AT4G12880 AT4G12880 AT5G15350
fragaria_vesca	FvH4_6g47771
malus_domestica	MD09G1057500.v1.1 MD09G1057600.v1.1 MD17G1054500.v1.1
prunus_persica	Prupe.3G261600_v2.0.a1
pyrus_communis	pycom111g04780 pycom17g05210
rosa_chinensis	RchiOBHm_Chr2g0166941
rosa_multiflora	Rmu_co8238553.1_g000001 Rmu_co8299167.1_g000001 Rmu_sc0002735.1_g000018
rosa_roxburghii	Rroxscaffold_2G00083950 Rroxscaffold_2G00084410
rosa_rugosa	Rorug02G0526500
rosa_samantha	Rh2AG593400 Rh2BG605000 Rh2CG575800 Rh2DG616600
rosa_wichuraiana	Rw2G049410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	20, 23, 296, 438, 459
AclWI	GGATC	1 cut(s)	153
AfaI	GTAC	1 cut(s)	341
AgsI	TTSAA	1 cut(s)	377
AluBI	AGCT	3 cut(s)	17, 77, 361
AluI	AGCT	3 cut(s)	17, 77, 361
Alw26I	GTCTC	2 cut(s)	159, 238
AlwI	GGATC	1 cut(s)	153
Ama87I	CYCGRG	1 cut(s)	395
ApeKI	GCWGC	2 cut(s)	17, 401
AspS9I	GGNCC	2 cut(s)	111, 267
AsuHPI	GGTGA	2 cut(s)	64, 226
AvaI	CYCGRG	1 cut(s)	395
AvaII	GGWCC	2 cut(s)	111, 267
BanII	GRGCYC	1 cut(s)	142
BauI	CACGAG	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	457
BbvI	GCAGC	2 cut(s)	4, 388
BccI	CCATC	2 cut(s)	49, 479
BceAI	ACGGC	1 cut(s)	350
BcgI	CGANNNNNNTGC	2 cut(s)	343, 377
BcoDI	GTCTC	2 cut(s)	159, 238
BfaI	CTAG	1 cut(s)	330
BglI	GCCNNNNNGGC	1 cut(s)	476
BisI	GCNGC	3 cut(s)	18, 21, 402
BlsI	GCNGC	3 cut(s)	19, 22, 403
Bme18I	GGWCC	2 cut(s)	111, 267
BmeT110I	CYCGRG	1 cut(s)	395
BmgT120I	GGNCC	2 cut(s)	111, 267
BmiI	GGNNCC	3 cut(s)	194, 277, 294
BmrI	ACTGGG	2 cut(s)	401, 439
BmsI	GCATC	1 cut(s)	80
BmuI	ACTGGG	2 cut(s)	401, 439
BpiI	GAAGAC	1 cut(s)	457
BplI	GAGNNNNNCTC	2 cut(s)	156, 188
BpmI	CTGGAG	1 cut(s)	294
Bpu10I	CCTNAGC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	396
Bse1I	ACTGG	5 cut(s)	173, 269, 277, 407, 445
Bse3DI	GCAATG	3 cut(s)	124, 247, 486
BseDI	CCNNGG	1 cut(s)	396
BseGI	GGATG	2 cut(s)	208, 250
BseMI	GCAATG	3 cut(s)	124, 247, 486
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	5 cut(s)	173, 269, 277, 407, 445
BseXI	GCAGC	2 cut(s)	4, 388
BsiHKCI	CYCGRG	1 cut(s)	395
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	2 cut(s)	326, 500
BsmAI	GTCTC	2 cut(s)	159, 238
BsmFI	GGGAC	2 cut(s)	326, 500
BsoBI	CYCGRG	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	145
BspACI	CCGC	5 cut(s)	20, 23, 296, 438, 459
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	3 cut(s)	194, 277, 294
BspPI	GGATC	1 cut(s)	153
BspQI	GCTCTTC	1 cut(s)	407
BsrDI	GCAATG	3 cut(s)	124, 247, 486
BsrI	ACTGG	5 cut(s)	173, 269, 277, 407, 445
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	1 cut(s)	145
BssSI	CACGAG	1 cut(s)	235
Bst2BI	CACGAG	1 cut(s)	235
Bst6I	CTCTTC	2 cut(s)	277, 407
BstC8I	GCNNGC	2 cut(s)	363, 459
BstDEI	CTNAG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	208, 250
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	2 cut(s)	159, 238
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	3 cut(s)	351, 467, 476
BstNSI	RCATGY	1 cut(s)	385
BstV1I	GCAGC	2 cut(s)	4, 388
BstV2I	GAAGAC	1 cut(s)	457
BtsCI	GGATG	2 cut(s)	208, 250
BtsI	GCAGTG	1 cut(s)	430
BtsIMutI	CAGTG	3 cut(s)	270, 414, 430
Cac8I	GCNNGC	2 cut(s)	363, 459
Cfr13I	GGNCC	2 cut(s)	111, 267
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	2 cut(s)	355, 382
CviJI	RGCY	8 cut(s)	17, 77, 140, 172, 278, 361, 401, 502
CviKI_1	RGCY	8 cut(s)	17, 77, 140, 172, 278, 361, 401, 502
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
Eam1104I	CTCTTC	2 cut(s)	277, 407
EarI	CTCTTC	2 cut(s)	277, 407
Eco24I	GRGCYC	1 cut(s)	142
Eco47I	GGWCC	2 cut(s)	111, 267
Eco88I	CYCGRG	1 cut(s)	395
EcoT38I	GRGCYC	1 cut(s)	142
FaeI	CATG	2 cut(s)	358, 385
FaqI	GGGAC	2 cut(s)	326, 500
FatI	CATG	2 cut(s)	354, 381
FauI	CCCGC	2 cut(s)	445, 466
Fnu4HI	GCNGC	3 cut(s)	18, 21, 402
FokI	GGATG	2 cut(s)	215, 237
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	3 cut(s)	18, 21, 402
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	3 cut(s)	18, 21, 402
GsuI	CTGGAG	1 cut(s)	294
HapII	CCGG	1 cut(s)	279
HgaI	GACGC	1 cut(s)	497
Hin1II	CATG	2 cut(s)	358, 385
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	2 cut(s)	64, 226
Hpy166II	GTNNAC	2 cut(s)	124, 217
Hpy188III	TCNNGA	2 cut(s)	65, 143
Hpy8I	GTNNAC	2 cut(s)	124, 217
HpyCH4V	TGCA	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	3 cut(s)	351, 467, 476
HpyF3I	CTNAG	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	358, 385
Kzo9I	GATC	1 cut(s)	145
LguI	GCTCTTC	1 cut(s)	407
LmnI	GCTCC	1 cut(s)	275
Lsp1109I	GCAGC	2 cut(s)	4, 388
LweI	GCATC	1 cut(s)	80
MaeI	CTAG	1 cut(s)	330
MaeIII	GTNAC	2 cut(s)	304, 425
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	3 cut(s)	294, 424, 457
MhlI	GDGCHC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	4 cut(s)	89, 205, 391, 396
MseI	TTAA	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	298
MspI	CCGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	3 cut(s)	351, 467, 476
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	2 cut(s)	358, 385
NlaIV	GGNNCC	3 cut(s)	194, 277, 294
NmuCI	GTSAC	2 cut(s)	304, 425
NspI	RCATGY	1 cut(s)	385
PciSI	GCTCTTC	1 cut(s)	407
PkrI	GCNGC	3 cut(s)	19, 22, 403
PspN4I	GGNNCC	3 cut(s)	194, 277, 294
PspPI	GGNCC	2 cut(s)	111, 267
PsrI	GAACNNNNNNTAC	2 cut(s)	240, 272
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SapI	GCTCTTC	1 cut(s)	407
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	3 cut(s)	18, 21, 402
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	2 cut(s)	111, 267
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	5 cut(s)	19, 79, 216, 363, 432
SfaNI	GCATC	1 cut(s)	80
SinI	GGWCC	2 cut(s)	111, 267
SsiI	CCGC	5 cut(s)	20, 23, 296, 438, 459
SspMI	CTAG	1 cut(s)	330
TauI	GCSGC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	3 cut(s)	277, 414, 430
TseFI	GTSAC	2 cut(s)	304, 425
TseI	GCWGC	2 cut(s)	17, 401
Tsp45I	GTSAC	2 cut(s)	304, 425
TspDTI	ATGAA	2 cut(s)	313, 371
TspRI	CASTG	3 cut(s)	277, 414, 430
VpaK11BI	GGWCC	2 cut(s)	111, 267
XceI	RCATGY	1 cut(s)	385
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.