Rh2DG616600

Lamin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008382
Physical Location & Seq
Forward (+)
84712107 .. 84713828
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG616600.1

Sequence Viewer

Length: 537 bp
ATGGAGAGGGTGAGGAGAGGGTTTGGGTCTGGTTCAGCTATGGCGGCTGTGGTGCTTTTGGCCTTGGTTTTGATCATGGTTCCAGAAGCCTCAGCTACTCGTTTTATTGTGGGAGGTAATAAGGGCTGGACTACCAATGTTAACTACACAATCTGGGCAAAGGACACGCACTTCTACAATGGAGATTGGCTCTTTTTTGTGTACGATAGGAACCAGCAGAATATCCTAGAGGTGAACAAGACAGACTATGAGGCATGCAATTCAGATCATCCACTTCACAATTGGACTACAGGAGCTGGAAGAGATGTGGTTCCACTAAATGTGACCAGGCGCTACTATTTCTTAAGCGGCAAGGGCTTCTGCTATAGTGGCATGAAGTTGGCTATTCAGGTTGAAAACCCACCTCCACCTCCCAAGGCTGCTCCGGTGGTGAGCGAGGGCAGCGCTCCATTAGCGCCTGTTTTTAGATCCCAATTTGTGTTGCCAGCCATTTTTGCTATTGGTGCAGTTTGGGATGCATTTCTTAGGTTCTGCTAG

Protein Analysis

178

Amino Acids

19.77

Weight (kDa)

8.82

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 43 - 125 1.5e-22 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 44, 348
AclWI GGATC 1 cut(s) 462
AfaI GTAC 1 cut(s) 203
AfeI AGCGCT 1 cut(s) 445
AflII CTTAAG 1 cut(s) 343
AgsI TTSAA 1 cut(s) 395
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 3 cut(s) 38, 95, 296
AluI AGCT 3 cut(s) 38, 95, 296
AlwI GGATC 1 cut(s) 462
AlwNI CAGNNNCTG 1 cut(s) 296
Aor51HI AGCGCT 1 cut(s) 445
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 419, 441
AspLEI GCGC 3 cut(s) 333, 446, 457
AsuHPI GGTGA 3 cut(s) 22, 244, 442
BbvCI CCTCAGC 1 cut(s) 91
BbvI GCAGC 2 cut(s) 406, 453
BciT130I CCWGG 1 cut(s) 328
BclI TGATCA 1 cut(s) 72
BfaI CTAG 2 cut(s) 227, 535
BfmI CTRYAG 2 cut(s) 288, 364
BfoI RGCGCY 3 cut(s) 334, 447, 458
BfrI CTTAAG 1 cut(s) 343
BisI GCNGC 4 cut(s) 45, 349, 420, 442
BlsI GCNGC 4 cut(s) 46, 350, 421, 443
Bme1390I CCNGG 1 cut(s) 328
BmiI GGNNCC 3 cut(s) 81, 212, 312
BmrFI CCNGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 505
BplI GAGNNNNNCTC 2 cut(s) 174, 206
Bpu10I CCTNAGC 1 cut(s) 91
BsaJI CCNNGG 2 cut(s) 63, 414
BsaWI WCCGGW 1 cut(s) 424
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 63, 414
BseGI GGATG 2 cut(s) 268, 520
BseMII CTCAG 1 cut(s) 105
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 2 cut(s) 406, 453
BsgI GTGCAG 1 cut(s) 525
BshFI GGCC 1 cut(s) 62
BsiSI CCGG 1 cut(s) 425
BsnI GGCC 1 cut(s) 62
Bsp143I GATC 3 cut(s) 72, 265, 467
BspACI CCGC 2 cut(s) 44, 348
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 104
BspLI GGNNCC 3 cut(s) 81, 212, 312
BspPI GGATC 1 cut(s) 462
BspTI CTTAAG 1 cut(s) 343
BssECI CCNNGG 2 cut(s) 63, 414
BssMI GATC 3 cut(s) 72, 265, 467
BssT1I CCWWGG 2 cut(s) 63, 414
Bst2UI CCWGG 1 cut(s) 328
Bst6I CTCTTC 1 cut(s) 295
BstAFI CTTAAG 1 cut(s) 343
BstC8I GCNNGC 2 cut(s) 256, 486
BstDEI CTNAG 2 cut(s) 91, 524
BstF5I GGATG 2 cut(s) 268, 520
BstH2I RGCGCY 3 cut(s) 334, 447, 458
BstHHI GCGC 3 cut(s) 333, 446, 457
BstKTI GATC 3 cut(s) 75, 268, 470
BstMBI GATC 3 cut(s) 72, 265, 467
BstMWI GCNNNNNNNGC 7 cut(s) 44, 354, 369, 441, 452, 494, 503
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 326
BstSFI CTRYAG 2 cut(s) 288, 364
BstV1I GCAGC 2 cut(s) 406, 453
BstX2I RGATCY 1 cut(s) 467
BstYI RGATCY 1 cut(s) 467
BsuRI GGCC 1 cut(s) 62
BtsCI GGATG 2 cut(s) 268, 520
Cac8I GCNNGC 2 cut(s) 256, 486
CaiI CAGNNNCTG 1 cut(s) 296
CfoI GCGC 3 cut(s) 333, 446, 457
Csp6I GTAC 1 cut(s) 202
CviAII CATG 3 cut(s) 76, 255, 373
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 2 cut(s) 91, 524
DpnI GATC 3 cut(s) 74, 267, 469
DpnII GATC 3 cut(s) 72, 265, 467
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
Eco130I CCWWGG 2 cut(s) 63, 414
Eco47III AGCGCT 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 2 cut(s) 63, 414
EcoT22I ATGCAT 1 cut(s) 520
ErhI CCWWGG 2 cut(s) 63, 414
FaeI CATG 3 cut(s) 79, 258, 376
FaiI YATR 6 cut(s) 41, 77, 249, 256, 366, 374
FatI CATG 3 cut(s) 75, 254, 372
FbaI TGATCA 1 cut(s) 72
Fnu4HI GCNGC 4 cut(s) 45, 349, 420, 442
FokI GGATG 2 cut(s) 255, 527
Fsp4HI GCNGC 4 cut(s) 45, 349, 420, 442
FspBI CTAG 2 cut(s) 227, 535
GlaI GCGC 3 cut(s) 332, 445, 456
GluI GCNGC 4 cut(s) 45, 349, 420, 442
HaeII RGCGCY 3 cut(s) 334, 447, 458
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 425
HhaI GCGC 3 cut(s) 333, 446, 457
Hin1II CATG 3 cut(s) 79, 258, 376
Hin6I GCGC 3 cut(s) 331, 444, 455
HinP1I GCGC 3 cut(s) 331, 444, 455
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HpaI GTTAAC 1 cut(s) 142
HpaII CCGG 1 cut(s) 425
HphI GGTGA 3 cut(s) 22, 244, 442
Hpy166II GTNNAC 3 cut(s) 142, 202, 235
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 3 cut(s) 142, 202, 235
HpyCH4V TGCA 3 cut(s) 258, 506, 518
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 354, 369, 441, 452, 494, 503
HpyF3I CTNAG 2 cut(s) 91, 524
Hsp92II CATG 3 cut(s) 79, 258, 376
HspAI GCGC 3 cut(s) 331, 444, 455
Ksp22I TGATCA 1 cut(s) 72
KspAI GTTAAC 1 cut(s) 142
Kzo9I GATC 3 cut(s) 72, 265, 467
LmnI GCTCC 3 cut(s) 293, 427, 451
Lsp1109I GCAGC 2 cut(s) 406, 453
LweI GCATC 1 cut(s) 505
MaeI CTAG 2 cut(s) 227, 535
MaeIII GTNAC 1 cut(s) 322
MalI GATC 3 cut(s) 74, 267, 469
MboI GATC 3 cut(s) 72, 265, 467
MboII GAAGA 1 cut(s) 312
MfeI CAATTG 1 cut(s) 280
MflI RGATCY 1 cut(s) 467
MluCI AATT 3 cut(s) 259, 280, 473
MnlI CCTC 9 cut(s) 6, 11, 100, 107, 223, 244, 414, 420, 430
Mph1103I ATGCAT 1 cut(s) 520
MseI TTAA 2 cut(s) 141, 344
MspCI CTTAAG 1 cut(s) 343
MspI CCGG 1 cut(s) 425
MspR9I CCNGG 1 cut(s) 328
MunI CAATTG 1 cut(s) 280
MvaI CCWGG 1 cut(s) 328
MwoI GCNNNNNNNGC 7 cut(s) 44, 354, 369, 441, 452, 494, 503
NdeII GATC 3 cut(s) 72, 265, 467
NlaIII CATG 3 cut(s) 79, 258, 376
NlaIV GGNNCC 3 cut(s) 81, 212, 312
NmuCI GTSAC 1 cut(s) 322
NsiI ATGCAT 1 cut(s) 520
NspI RCATGY 1 cut(s) 258
PaeI GCATGC 1 cut(s) 258
PkrI GCNGC 4 cut(s) 46, 350, 421, 443
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 3 cut(s) 81, 212, 312
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 1 cut(s) 467
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SaqAI TTAA 2 cut(s) 141, 344
SatI GCNGC 4 cut(s) 45, 349, 420, 442
Sau3AI GATC 3 cut(s) 72, 265, 467
ScrFI CCNGG 1 cut(s) 328
SetI ASST 9 cut(s) 40, 97, 118, 234, 298, 393, 406, 412, 530
SfaNI GCATC 1 cut(s) 505
SfcI CTRYAG 2 cut(s) 288, 364
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
SphI GCATGC 1 cut(s) 258
Sse9I AATT 3 cut(s) 259, 280, 473
SsiI CCGC 2 cut(s) 44, 348
SspMI CTAG 2 cut(s) 227, 535
StyD4I CCNGG 1 cut(s) 326
StyI CCWWGG 2 cut(s) 63, 414
TasI AATT 3 cut(s) 259, 280, 473
TauI GCSGC 2 cut(s) 47, 351
Tru1I TTAA 2 cut(s) 141, 344
Tru9I TTAA 2 cut(s) 141, 344
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 2 cut(s) 419, 441
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 389
Vha464I CTTAAG 1 cut(s) 343
XceI RCATGY 1 cut(s) 258
XcmI CCANNNNNNNNNTGG 1 cut(s) 279
XspI CTAG 2 cut(s) 227, 535
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.