Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008725

Physical Location & Seq

Genomic Coordinates Reverse (-)

182396 .. 184403

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGAATCCAATTCGTTTTTCTTCGATCCATCTGCTTCACACGGCAACAGCATGTTCTTCCTTGGGAATCTCAATCCCGTCGTCCAAGGAGGAGGAGCAAGATCGATGATGAACATGGAGGAAACTTCGAAGCGAAGGCCCTTCTTTAGCTCCCCTGAGGATCTCTACGACGATGACTTTTACGACGACCAGTTGCCTGAAAAGAAGCGTCGCCTCACTACCGAACAAGTGCATCTGCTGGAGAAAAGCTTCGAGACAGAGAACAAGCTAGAGCCTGAACGCAAGACTCAGCTTGCCAAGAAGCTTGGTCTACAGCCAAGGCAAGTGGCTGTCTGGTTTCAGAATCGCCGAGCTCGTTGGAAAACAAAACAGCTTGAGAGAGACTACGATCTTCTCAAGTCCACTTACGACCAACTTCTTTCTAACTACGACTCCATCGTCATGGACAACGATAAGCTCAGATCCGAGGTTACTTCCCTGACCGAAAAGCTTCAGGGCAAACAAGAGACAGCTAATGAACCACCTGGTCAAGTGCCCGAACCAAACCAACTTGATCCGGTTTACATTAATGCGGCAGCAATCAAAACCGAGGACCGGTTAAGTTCAGGGAGCGTTGGGAGCGCGGTACTAGACGACGACGCACCTCAACTACTAGACAGCTGTGACTCTTACTTCCCAAGCATCGTACCCATCCAAGACAACAGCAACGCCAGTGATCATGACAATGACCGGAGCTGTTTCGCCGACGTCTTTGTGCCCACCACTTCACCGTCGCACGATCATCACGGTGAATCATTGGCTTTCTGGGGATGGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

272

Amino Acids

30.93

Weight (kDa)

4.77

Isoelectric Point (pI)

65.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	68 - 121	5.4e-18	Homeodomain
HALZ	PF02183	123 - 165	2.7e-16	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20280 AT1G61200 AT3G01470
fragaria_vesca	FvH4_6g50570
malus_domestica	MD09G1035100.v1.1 MD13G1014900.v1.1 MD13G1196700.v1.1 MD17G1035400.v1.1
prunus_persica	Prupe.3G283200_v2.0.a1
pyrus_communis	pycom111g02800 pycom17g03260
rosa_chinensis	RchiOBHm_Chr2g0171091
rosa_laevigata	RLG00000022002
rosa_multiflora	Rmu_sc0004565.1_g000009 Rmu_sc0007623.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080820
rosa_rugosa	Rorug02G0553600
rosa_samantha	Rh2AG627200 Rh2BG637100 Rh2CG606100 Rh2DG648700 Rh2DG654300
rosa_wichuraiana	Rw2G051910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
AatII	GACGTC	1 cut(s)	750
AccI	GTMKAC	1 cut(s)	310
AccII	CGCG	1 cut(s)	623
AciI	CCGC	2 cut(s)	572, 623
AclWI	GGATC	4 cut(s)	20, 168, 456, 548
AcuI	CTGAAG	1 cut(s)	476
AcyI	GRCGYC	1 cut(s)	747
AfaI	GTAC	2 cut(s)	627, 687
AfiI	CCNNNNNNNGG	1 cut(s)	594
AgeI	ACCGGT	1 cut(s)	594
AjnI	CCWGG	1 cut(s)	523
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
Alw21I	GWGCWC	1 cut(s)	355
Alw26I	GTCTC	3 cut(s)	248, 375, 500
AlwI	GGATC	4 cut(s)	20, 168, 456, 548
AoxI	GGCC	2 cut(s)	137, 812
ApeKI	GCWGC	1 cut(s)	575
AseI	ATTAAT	1 cut(s)	567
AsiGI	ACCGGT	1 cut(s)	594
Asp700I	GAANNNNTTC	2 cut(s)	248, 489
AspLEI	GCGC	1 cut(s)	623
AspS9I	GGNCC	2 cut(s)	138, 592
AsuHPI	GGTGA	2 cut(s)	759, 800
AsuII	TTCGAA	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	592
AxyI	CCTNAGG	1 cut(s)	156
BaeGI	GKGCMC	2 cut(s)	537, 759
BanII	GRGCYC	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	355
BbvI	GCAGC	1 cut(s)	587
BccI	CCATC	4 cut(s)	37, 443, 698, 804
BceAI	ACGGC	1 cut(s)	58
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BciT130I	CCWGG	1 cut(s)	525
BclI	TGATCA	1 cut(s)	715
BcoDI	GTCTC	3 cut(s)	248, 375, 500
BfaI	CTAG	3 cut(s)	269, 629, 653
BfmI	CTRYAG	1 cut(s)	311
BisI	GCNGC	2 cut(s)	573, 576
BlsI	GCNGC	2 cut(s)	574, 577
Bme1390I	CCNGG	1 cut(s)	525
Bme18I	GGWCC	1 cut(s)	592
BmgT120I	GGNCC	2 cut(s)	138, 592
BmrFI	CCNGG	1 cut(s)	525
BmsI	GCATC	2 cut(s)	241, 690
BpmI	CTGGAG	1 cut(s)	260
Bpu14I	TTCGAA	1 cut(s)	128
BpuEI	CTTGAG	2 cut(s)	380, 395
Bsa29I	ATCGAT	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	747
BsaJI	CCNNGG	5 cut(s)	61, 85, 317, 465, 588
BsaWI	WCCGGW	3 cut(s)	556, 594, 729
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	1 cut(s)	594
Bse118I	RCCGGY	1 cut(s)	594
Bse1I	ACTGG	2 cut(s)	190, 711
Bse21I	CCTNAGG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	525
BseCI	ATCGAT	1 cut(s)	104
BseDI	CCNNGG	5 cut(s)	61, 85, 317, 465, 588
BseGI	GGATG	2 cut(s)	690, 815
BseLI	CCNNNNNNNGG	1 cut(s)	594
BseMII	CTCAG	3 cut(s)	147, 302, 472
BseNI	ACTGG	2 cut(s)	190, 711
BseRI	GAGGAG	2 cut(s)	105, 108
BseSI	GKGCMC	2 cut(s)	537, 759
BseXI	GCAGC	1 cut(s)	587
Bsh1236I	CGCG	1 cut(s)	623
BshFI	GGCC	2 cut(s)	139, 814
BshTI	ACCGGT	1 cut(s)	594
BshVI	ATCGAT	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	355
BsiSI	CCGG	3 cut(s)	557, 595, 730
BslI	CCNNNNNNNGG	1 cut(s)	594
BsmAI	GTCTC	3 cut(s)	248, 375, 500
BsnI	GGCC	2 cut(s)	139, 814
Bsp119I	TTCGAA	1 cut(s)	128
Bsp1286I	GDGCHC	3 cut(s)	355, 537, 759
Bsp143I	GATC	8 cut(s)	25, 101, 160, 388, 461, 553, 715, 778
BspACI	CCGC	2 cut(s)	572, 623
BspANI	GGCC	2 cut(s)	139, 814
BspCNI	CTCAG	3 cut(s)	148, 301, 471
BspDI	ATCGAT	1 cut(s)	104
BspFNI	CGCG	1 cut(s)	623
BspHI	TCATGA	1 cut(s)	718
BspPI	GGATC	4 cut(s)	20, 168, 456, 548
BspT104I	TTCGAA	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	594
BsrI	ACTGG	2 cut(s)	190, 711
BssAI	RCCGGY	1 cut(s)	594
BssECI	CCNNGG	5 cut(s)	61, 85, 317, 465, 588
BssMI	GATC	8 cut(s)	25, 101, 160, 388, 461, 553, 715, 778
BssNI	GRCGYC	1 cut(s)	747
BssT1I	CCWWGG	3 cut(s)	61, 85, 317
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	2 cut(s)	771, 788
BstACI	GRCGYC	1 cut(s)	747
BstBI	TTCGAA	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	4 cut(s)	156, 288, 458, 816
BstF5I	GGATG	2 cut(s)	690, 815
BstFNI	CGCG	1 cut(s)	623
BstHHI	GCGC	1 cut(s)	623
BstKTI	GATC	8 cut(s)	28, 104, 163, 391, 464, 556, 718, 781
BstMAI	GTCTC	3 cut(s)	248, 375, 500
BstMBI	GATC	8 cut(s)	25, 101, 160, 388, 461, 553, 715, 778
BstMWI	GCNNNNNNNGC	1 cut(s)	618
BstNI	CCWGG	1 cut(s)	525
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	523
BstSFI	CTRYAG	1 cut(s)	311
BstSLI	GKGCMC	2 cut(s)	537, 759
BstUI	CGCG	1 cut(s)	623
BstV1I	GCAGC	1 cut(s)	587
BstX2I	RGATCY	2 cut(s)	160, 461
BstXI	CCANNNNNNTGG	1 cut(s)	442
BstYI	RGATCY	2 cut(s)	160, 461
Bsu15I	ATCGAT	1 cut(s)	104
Bsu36I	CCTNAGG	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	139, 814
BsuTUI	ATCGAT	1 cut(s)	104
BtsCI	GGATG	2 cut(s)	690, 815
BtsIMutI	CAGTG	1 cut(s)	718
Cac8I	GCNNGC	1 cut(s)	294
CciI	TCATGA	1 cut(s)	718
CfoI	GCGC	1 cut(s)	623
Cfr10I	RCCGGY	1 cut(s)	594
Cfr13I	GGNCC	2 cut(s)	138, 592
ClaI	ATCGAT	1 cut(s)	104
CseI	GACGC	2 cut(s)	197, 647
CsiI	ACCWGGT	1 cut(s)	523
Csp6I	GTAC	2 cut(s)	626, 686
CspAI	ACCGGT	1 cut(s)	594
CspCI	CAANNNNNGTGG	2 cut(s)	306, 341
CviAII	CATG	4 cut(s)	52, 115, 442, 719
CviQI	GTAC	2 cut(s)	626, 686
DdeI	CTNAG	4 cut(s)	156, 288, 458, 816
DpnI	GATC	8 cut(s)	27, 103, 162, 390, 463, 555, 717, 780
DpnII	GATC	8 cut(s)	25, 101, 160, 388, 461, 553, 715, 778
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
Ecl136II	GAGCTC	1 cut(s)	353
Eco130I	CCWWGG	3 cut(s)	61, 85, 317
Eco24I	GRGCYC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	592
Eco53kI	GAGCTC	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	476
Eco81I	CCTNAGG	1 cut(s)	156
EcoICRI	GAGCTC	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	523
EcoT14I	CCWWGG	3 cut(s)	61, 85, 317
EcoT38I	GRGCYC	1 cut(s)	355
ErhI	CCWWGG	3 cut(s)	61, 85, 317
FaeI	CATG	4 cut(s)	55, 118, 445, 722
FaiI	YATR	4 cut(s)	53, 116, 443, 720
FatI	CATG	4 cut(s)	51, 114, 441, 718
FbaI	TGATCA	1 cut(s)	715
FblI	GTMKAC	1 cut(s)	310
Fnu4HI	GCNGC	2 cut(s)	573, 576
FokI	GGATG	1 cut(s)	677
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	2 cut(s)	573, 576
FspBI	CTAG	3 cut(s)	269, 629, 653
GlaI	GCGC	1 cut(s)	622
GluI	GCNGC	2 cut(s)	573, 576
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	2 cut(s)	139, 814
HapII	CCGG	3 cut(s)	557, 595, 730
HgaI	GACGC	2 cut(s)	197, 647
HhaI	GCGC	1 cut(s)	623
Hin1I	GRCGYC	1 cut(s)	747
Hin1II	CATG	4 cut(s)	55, 118, 445, 722
Hin6I	GCGC	1 cut(s)	621
HinP1I	GCGC	1 cut(s)	621
HindIII	AAGCTT	3 cut(s)	247, 302, 488
HinfI	GANTC	7 cut(s)	5, 67, 286, 343, 431, 665, 791
HpaII	CCGG	3 cut(s)	557, 595, 730
HphI	GGTGA	2 cut(s)	759, 800
Hpy166II	GTNNAC	3 cut(s)	311, 402, 562
Hpy188I	TCNGA	3 cut(s)	342, 461, 466
Hpy188III	TCNNGA	2 cut(s)	253, 719
Hpy8I	GTNNAC	3 cut(s)	311, 402, 562
Hpy99I	CGWCG	8 cut(s)	83, 173, 188, 213, 638, 641, 749, 775
HpyAV	CCTTC	2 cut(s)	129, 151
HpyCH4III	ACNGT	2 cut(s)	771, 788
HpyCH4IV	ACGT	1 cut(s)	747
HpyCH4V	TGCA	1 cut(s)	232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	618
HpyF3I	CTNAG	4 cut(s)	156, 288, 458, 816
HpySE526I	ACGT	1 cut(s)	747
Hsp92I	GRCGYC	1 cut(s)	747
Hsp92II	CATG	4 cut(s)	55, 118, 445, 722
HspAI	GCGC	1 cut(s)	621
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	8 cut(s)	25, 101, 160, 388, 461, 553, 715, 778
LmnI	GCTCC	5 cut(s)	95, 155, 609, 618, 732
Lsp1109I	GCAGC	1 cut(s)	587
LweI	GCATC	2 cut(s)	241, 690
MabI	ACCWGGT	1 cut(s)	523
MaeI	CTAG	3 cut(s)	269, 629, 653
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	2 cut(s)	469, 662
MalI	GATC	8 cut(s)	27, 103, 162, 390, 463, 555, 717, 780
MboI	GATC	8 cut(s)	25, 101, 160, 388, 461, 553, 715, 778
MboII	GAAGA	3 cut(s)	13, 49, 383
MflI	RGATCY	2 cut(s)	160, 461
MhlI	GDGCHC	3 cut(s)	355, 537, 759
MluCI	AATT	1 cut(s)	10
MlyI	GAGTC	3 cut(s)	280, 425, 659
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	8 cut(s)	83, 86, 112, 151, 224, 460, 583, 654
MroXI	GAANNNNTTC	2 cut(s)	248, 489
MseI	TTAA	2 cut(s)	567, 599
MslI	CAYNNNNRTG	3 cut(s)	440, 723, 786
MspA1I	CMGCKG	1 cut(s)	660
MspI	CCGG	3 cut(s)	557, 595, 730
MspR9I	CCNGG	1 cut(s)	525
MvaI	CCWGG	1 cut(s)	525
MvnI	CGCG	1 cut(s)	623
MwoI	GCNNNNNNNGC	1 cut(s)	618
NdeII	GATC	8 cut(s)	25, 101, 160, 388, 461, 553, 715, 778
NlaIII	CATG	4 cut(s)	55, 118, 445, 722
NmeAIII	GCCGAG	1 cut(s)	374
NmuCI	GTSAC	1 cut(s)	662
NspI	RCATGY	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	128
PagI	TCATGA	1 cut(s)	718
PcsI	WCGNNNNNNNCGW	2 cut(s)	352, 435
PdmI	GAANNNNTTC	2 cut(s)	248, 489
PfeI	GAWTC	4 cut(s)	5, 67, 343, 791
PinAI	ACCGGT	1 cut(s)	594
PkrI	GCNGC	2 cut(s)	574, 577
PleI	GAGTC	3 cut(s)	280, 425, 659
PpsI	GAGTC	3 cut(s)	280, 425, 659
PshBI	ATTAAT	1 cut(s)	567
Psp124BI	GAGCTC	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	523
PspPI	GGNCC	2 cut(s)	138, 592
PsuI	RGATCY	2 cut(s)	160, 461
PvuII	CAGCTG	1 cut(s)	660
RsaI	GTAC	2 cut(s)	627, 687
RsaNI	GTAC	2 cut(s)	626, 686
RseI	CAYNNNNRTG	3 cut(s)	440, 723, 786
SacI	GAGCTC	1 cut(s)	355
SaqAI	TTAA	2 cut(s)	567, 599
SatI	GCNGC	2 cut(s)	573, 576
Sau3AI	GATC	8 cut(s)	25, 101, 160, 388, 461, 553, 715, 778
Sau96I	GGNCC	2 cut(s)	138, 592
SchI	GAGTC	3 cut(s)	280, 425, 659
ScrFI	CCNGG	1 cut(s)	525
SduI	GDGCHC	3 cut(s)	355, 537, 759
SexAI	ACCWGGT	1 cut(s)	523
SfaNI	GCATC	2 cut(s)	241, 690
SfcI	CTRYAG	1 cut(s)	311
SfuI	TTCGAA	1 cut(s)	128
SinI	GGWCC	1 cut(s)	592
SmiMI	CAYNNNNRTG	3 cut(s)	440, 723, 786
SmlI	CTYRAG	2 cut(s)	374, 395
SmoI	CTYRAG	2 cut(s)	374, 395
Sse9I	AATT	1 cut(s)	10
SsiI	CCGC	2 cut(s)	572, 623
SspMI	CTAG	3 cut(s)	269, 629, 653
SstI	GAGCTC	1 cut(s)	355
StyD4I	CCNGG	1 cut(s)	523
StyI	CCWWGG	3 cut(s)	61, 85, 317
TaaI	ACNGT	2 cut(s)	771, 788
TaiI	ACGT	1 cut(s)	750
TaqI	TCGA	4 cut(s)	24, 104, 128, 252
TaqII	GACCGA	1 cut(s)	497
TasI	AATT	1 cut(s)	10
TauI	GCSGC	1 cut(s)	575
TfiI	GAWTC	4 cut(s)	5, 67, 343, 791
Tru1I	TTAA	2 cut(s)	567, 599
Tru9I	TTAA	2 cut(s)	567, 599
TscAI	CASTG	1 cut(s)	718
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	2 cut(s)	125, 531
TspRI	CASTG	1 cut(s)	718
VpaK11BI	GGWCC	1 cut(s)	592
VspI	ATTAAT	1 cut(s)	567
XceI	RCATGY	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	310
XmnI	GAANNNNTTC	2 cut(s)	248, 489
XspI	CTAG	3 cut(s)	269, 629, 653
ZraI	GACGTC	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.