Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007623.1

Orthogroup ID

OG0008725

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1251

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007623.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

gtggtcgccataactgagaaacttgaagctaaagatcaggaggaaaaaggagcagcatttgcaggtgatcatcatcatcatgatgagaagcgtctccctggtcatcttcttccaggtgagaaagagatgatcacggatgtcaatgttccaatgagcctccagttcgatgtgaaggttgaggatcgcctgagctccgggagcggtgcttccgccgtggtggacgaggaaggccctcagcacgtggacagcggtgactcgtatttcccaagtagctctgacgtccacaattatcctcctcctcatcctccacatgatcatcaccactgcatggggctagtaggtggggtccactcggaggacgatggcagcgatgacggtcggagttacttctctgatgtgtttgccgccgccgccgcagagcagcagcagcagcagccggaggagggcgtgtcgatgggctggtgggtgtggtcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

158

Amino Acids

17.23

Weight (kDa)

4.66

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20280 AT1G61200 AT3G01470
fragaria_vesca	FvH4_6g50570
malus_domestica	MD09G1035100.v1.1 MD13G1014900.v1.1 MD13G1196700.v1.1 MD17G1035400.v1.1
prunus_persica	Prupe.3G283200_v2.0.a1
pyrus_communis	pycom111g02800 pycom17g03260
rosa_chinensis	RchiOBHm_Chr2g0171091
rosa_laevigata	RLG00000022002
rosa_multiflora	Rmu_sc0004565.1_g000009 Rmu_sc0007623.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080820
rosa_rugosa	Rorug02G0553600
rosa_samantha	Rh2AG627200 Rh2BG637100 Rh2CG606100 Rh2DG648700 Rh2DG654300
rosa_wichuraiana	Rw2G051910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	53
AatII	GACGTC	1 cut(s)	282
Acc36I	ACCTGC	1 cut(s)	53
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccBSI	CCGCTC	1 cut(s)	201
AciI	CCGC	7 cut(s)	201, 210, 249, 405, 408, 411, 414
AclWI	GGATC	1 cut(s)	189
AcvI	CACGTG	1 cut(s)	241
AcyI	GRCGYC	1 cut(s)	279
AfiI	CCNNNNNNNGG	3 cut(s)	328, 355, 443
AgsI	TTSAA	1 cut(s)	26
AjnI	CCWGG	2 cut(s)	97, 112
AluBI	AGCT	3 cut(s)	29, 192, 273
AluI	AGCT	3 cut(s)	29, 192, 273
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	189
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	7 cut(s)	53, 366, 421, 424, 427, 430, 433
AspS9I	GGNCC	3 cut(s)	230, 346, 471
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	4 cut(s)	77, 128, 263, 311
AvaII	GGWCC	2 cut(s)	346, 471
BanII	GRGCYC	1 cut(s)	194
BbrPI	CACGTG	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	194
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	7 cut(s)	65, 378, 433, 436, 439, 442, 445
BccI	CCATC	2 cut(s)	356, 448
BceAI	ACGGC	1 cut(s)	197
BciT130I	CCWGG	2 cut(s)	99, 114
BclI	TGATCA	3 cut(s)	67, 129, 313
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	335
BfuAI	ACCTGC	1 cut(s)	53
Bme1390I	CCNGG	3 cut(s)	99, 114, 196
Bme18I	GGWCC	2 cut(s)	346, 471
BmgT120I	GGNCC	3 cut(s)	230, 346, 471
BmiI	GGNNCC	1 cut(s)	347
BmrFI	CCNGG	3 cut(s)	99, 114, 196
BpmI	CTGGAG	1 cut(s)	143
Bpu10I	CCTNAGC	2 cut(s)	188, 234
BpuMI	CCSGG	1 cut(s)	196
BsaAI	YACGTR	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	72
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	97, 213
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bsc4I	CCNNNNNNNGG	3 cut(s)	328, 355, 443
Bse1I	ACTGG	1 cut(s)	160
Bse8I	GATNNNNATC	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	99, 114
BseDI	CCNNGG	2 cut(s)	97, 213
BseGI	GGATG	2 cut(s)	142, 301
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	3 cut(s)	328, 355, 443
BseMII	CTCAG	3 cut(s)	6, 179, 248
BseNI	ACTGG	1 cut(s)	160
BseRI	GAGGAG	3 cut(s)	285, 288, 455
BseXI	GCAGC	7 cut(s)	65, 378, 433, 436, 439, 442, 445
Bsh1285I	CGRYCG	1 cut(s)	379
BshFI	GGCC	1 cut(s)	231
BsiEI	CGRYCG	1 cut(s)	379
BsiHKAI	GWGCWC	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	195, 437
BslI	CCNNNNNNNGG	3 cut(s)	328, 355, 443
BsmAI	GTCTC	1 cut(s)	98
BsmBI	CGTCTC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp143I	GATC	5 cut(s)	34, 67, 129, 181, 313
BspACI	CCGC	7 cut(s)	201, 210, 249, 405, 408, 411, 414
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	3 cut(s)	7, 180, 247
BspHI	TCATGA	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	347
BspMI	ACCTGC	1 cut(s)	53
BspPI	GGATC	1 cut(s)	189
BsrBI	CCGCTC	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	2 cut(s)	97, 213
BssMI	GATC	5 cut(s)	34, 67, 129, 181, 313
BssNI	GRCGYC	1 cut(s)	279
Bst2UI	CCWGG	2 cut(s)	99, 114
Bst4CI	ACNGT	1 cut(s)	377
BstACI	GRCGYC	1 cut(s)	279
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstBAI	YACGTR	1 cut(s)	241
BstDEI	CTNAG	3 cut(s)	15, 188, 234
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	2 cut(s)	142, 301
BstKTI	GATC	5 cut(s)	37, 70, 132, 184, 316
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	5 cut(s)	34, 67, 129, 181, 313
BstMCI	CGRYCG	1 cut(s)	379
BstMWI	GCNNNNNNNGC	7 cut(s)	59, 198, 410, 413, 427, 430, 433
BstNI	CCWGG	2 cut(s)	99, 114
BstSCI	CCNGG	3 cut(s)	97, 112, 194
BstV1I	GCAGC	7 cut(s)	65, 378, 433, 436, 439, 442, 445
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	213
BtgZI	GCGATG	1 cut(s)	384
BtsCI	GGATG	2 cut(s)	142, 301
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	322
BveI	ACCTGC	1 cut(s)	53
CciI	TCATGA	1 cut(s)	79
Cfr13I	GGNCC	3 cut(s)	230, 346, 471
CseI	GACGC	1 cut(s)	80
CviAII	CATG	3 cut(s)	80, 311, 328
CviJI	RGCY	8 cut(s)	29, 156, 192, 231, 273, 334, 436, 459
CviKI_1	RGCY	8 cut(s)	29, 156, 192, 231, 273, 334, 436, 459
DdeI	CTNAG	3 cut(s)	15, 188, 234
DpnI	GATC	5 cut(s)	36, 69, 131, 183, 315
DpnII	GATC	5 cut(s)	34, 67, 129, 181, 313
EciI	GGCGGA	1 cut(s)	199
Ecl136II	GAGCTC	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	194
Eco47I	GGWCC	2 cut(s)	346, 471
Eco53kI	GAGCTC	1 cut(s)	192
Eco72I	CACGTG	1 cut(s)	241
EcoICRI	GAGCTC	1 cut(s)	192
EcoO109I	RGGNCCY	1 cut(s)	230
EcoRII	CCWGG	2 cut(s)	97, 112
EcoT38I	GRGCYC	1 cut(s)	194
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	3 cut(s)	83, 314, 331
FaiI	YATR	4 cut(s)	11, 81, 312, 329
FatI	CATG	3 cut(s)	79, 310, 327
FbaI	TGATCA	3 cut(s)	67, 129, 313
FokI	GGATG	2 cut(s)	149, 288
FriOI	GRGCYC	1 cut(s)	194
FspBI	CTAG	1 cut(s)	335
GsuI	CTGGAG	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	2 cut(s)	195, 437
HgaI	GACGC	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	3 cut(s)	83, 314, 331
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	2 cut(s)	195, 437
HphI	GGTGA	4 cut(s)	77, 128, 263, 311
Hpy166II	GTNNAC	4 cut(s)	220, 244, 283, 349
Hpy188I	TCNGA	4 cut(s)	277, 355, 381, 394
Hpy188III	TCNNGA	2 cut(s)	38, 80
Hpy8I	GTNNAC	4 cut(s)	220, 244, 283, 349
HpyAV	CCTTC	2 cut(s)	166, 221
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	2 cut(s)	240, 279
HpyCH4V	TGCA	2 cut(s)	62, 327
HpyF10VI	GCNNNNNNNGC	7 cut(s)	59, 198, 410, 413, 427, 430, 433
HpyF3I	CTNAG	3 cut(s)	15, 188, 234
HpySE526I	ACGT	2 cut(s)	240, 279
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	83, 314, 331
Ksp22I	TGATCA	3 cut(s)	67, 129, 313
Kzo9I	GATC	5 cut(s)	34, 67, 129, 181, 313
LmnI	GCTCC	3 cut(s)	50, 197, 198
Lsp1109I	GCAGC	7 cut(s)	65, 378, 433, 436, 439, 442, 445
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	2 cut(s)	240, 279
MaeIII	GTNAC	2 cut(s)	251, 383
MalI	GATC	5 cut(s)	36, 69, 131, 183, 315
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	5 cut(s)	34, 67, 129, 181, 313
MboII	GAAGA	2 cut(s)	98, 101
MhlI	GDGCHC	1 cut(s)	194
MluCI	AATT	1 cut(s)	286
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	359
MslI	CAYNNNNRTG	2 cut(s)	78, 81
MspA1I	CMGCKG	1 cut(s)	249
MspI	CCGG	2 cut(s)	195, 437
MspR9I	CCNGG	3 cut(s)	99, 114, 196
MvaI	CCWGG	2 cut(s)	99, 114
MwoI	GCNNNNNNNGC	7 cut(s)	59, 198, 410, 413, 427, 430, 433
NciI	CCSGG	1 cut(s)	196
NdeII	GATC	5 cut(s)	34, 67, 129, 181, 313
NlaIII	CATG	3 cut(s)	83, 314, 331
NlaIV	GGNNCC	1 cut(s)	347
NmuCI	GTSAC	1 cut(s)	251
PagI	TCATGA	1 cut(s)	79
PaqCI	CACCTGC	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PflMI	CCANNNNNTGG	1 cut(s)	328
PfoI	TCCNGGA	1 cut(s)	194
PleI	GAGTC	1 cut(s)	248
PmaCI	CACGTG	1 cut(s)	241
PmlI	CACGTG	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	248
Ppu21I	YACGTR	1 cut(s)	241
Psp124BI	GAGCTC	1 cut(s)	194
Psp6I	CCWGG	2 cut(s)	97, 112
PspCI	CACGTG	1 cut(s)	241
PspGI	CCWGG	2 cut(s)	97, 112
PspN4I	GGNNCC	1 cut(s)	347
PspPI	GGNCC	3 cut(s)	230, 346, 471
RseI	CAYNNNNRTG	2 cut(s)	78, 81
SacI	GAGCTC	1 cut(s)	194
Sau3AI	GATC	5 cut(s)	34, 67, 129, 181, 313
Sau96I	GGNCC	3 cut(s)	230, 346, 471
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	3 cut(s)	99, 114, 196
SduI	GDGCHC	1 cut(s)	194
SetI	ASST	9 cut(s)	31, 67, 118, 177, 194, 243, 275, 282, 343
SinI	GGWCC	2 cut(s)	346, 471
SmiMI	CAYNNNNRTG	2 cut(s)	78, 81
Sse9I	AATT	1 cut(s)	286
SsiI	CCGC	7 cut(s)	201, 210, 249, 405, 408, 411, 414
SspMI	CTAG	1 cut(s)	335
SstI	GAGCTC	1 cut(s)	194
StyD4I	CCNGG	3 cut(s)	97, 112, 194
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	2 cut(s)	243, 282
TaqI	TCGA	2 cut(s)	165, 452
TasI	AATT	1 cut(s)	286
TauI	GCSGC	4 cut(s)	407, 410, 413, 416
TscAI	CASTG	1 cut(s)	329
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	7 cut(s)	53, 366, 421, 424, 427, 430, 433
Tsp45I	GTSAC	1 cut(s)	251
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	329
Van91I	CCANNNNNTGG	1 cut(s)	328
VpaK11BI	GGWCC	2 cut(s)	346, 471
XspI	CTAG	1 cut(s)	335
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.