Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008725

Physical Location & Seq

Genomic Coordinates Forward (+)

3756334 .. 3759323

Gene Structure 2990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00080820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAGCCAGGCCGTCTTTTCTTTGAGCCTCAGCAAGGTGGTGGCGGCAACATGTTGTTCCTCGGGAGTGGTGATCACGTTTTCCGAGGGCCGAGATCGATAATTGGCCTGGAGGAAACTTCGAGGAGGCGATCGTTTTTCAGCACGCAAGATGAATTGTACGAGGAGGAATATTACGACGAGCAGATGCCAGAGAAGAAGCGCCGCCTCACGGCCGAGCAGGTGCATCTGCTGGAGAAGAGCTTTGAGACAGATAACAAACTGGAGCCGGAAGCTAAGGCGCAGCTGGCCAAGAAGCTAAGGCTGCAGCCAAGACAGGTGGCTGTGTGGTTCCAGAATCGTAGGGCTCGCTGGAAGACAAAGCAGCTTGAGCGCGATTATGATGTTCTAAAAGCCTCTTATGACTCCCTTTTGGCTAACTATGATTCTATCCTCAAGGAGAATCAGAAGCTCAAATCCGAGATTCACAATCACCTGGTGGTCGCCATAACTGAGAAACTTGAGGCTAAAGATCAGGAGGAAAAAGGAGCAGCATTTGCAGGTGATCATCATCATCATGATGAGAAGCGTCTCGCTGGTCATCTTCTTCCAGGTGAGAAAGAGATGATCACGGATGTCAATGTTCCAATGAGCCTCCAGTTCGACGTGAAGGTTGAGGATCGCCTGAGCTCCGGGAGCGGCGCTTCCGCCGTGGTGGACGAGGAAGGCCCTCAGCACGTGGACAGCGGTGACTCGTATTTCCCAAGTAGCTCTGACGTCCACAATTATCCTCCTCATCCTCCACATGATCATCACCACTGCATGGGGCTAGTAGGTGGGGTCCACTCGGAGGACGATGGCAGCGATGACGGTCGGAGTTACTTCTCTGATGTGTTTGCCTCCGCCGCCGCAGAGCAGCAGCAGCCGGAGGAGGGCGTGTCGATGGGCTGGTGGGTGTGGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

314

Amino Acids

35.67

Weight (kDa)

5.26

Isoelectric Point (pI)

64.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	66 - 119	2.8e-17	Homeodomain
HALZ	PF02183	121 - 156	1.9e-16	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20280 AT1G61200 AT3G01470
fragaria_vesca	FvH4_6g50570
malus_domestica	MD09G1035100.v1.1 MD13G1014900.v1.1 MD13G1196700.v1.1 MD17G1035400.v1.1
prunus_persica	Prupe.3G283200_v2.0.a1
pyrus_communis	pycom111g02800 pycom17g03260
rosa_chinensis	RchiOBHm_Chr2g0171091
rosa_laevigata	RLG00000022002
rosa_multiflora	Rmu_sc0004565.1_g000009 Rmu_sc0007623.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080820
rosa_rugosa	Rorug02G0553600
rosa_samantha	Rh2AG627200 Rh2BG637100 Rh2CG606100 Rh2DG648700 Rh2DG654300
rosa_wichuraiana	Rw2G051910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	211, 530
AatII	GACGTC	1 cut(s)	759
Acc36I	ACCTGC	2 cut(s)	211, 530
AccB7I	CCANNNNNTGG	1 cut(s)	802
AccBSI	CCGCTC	1 cut(s)	678
AccII	CGCG	1 cut(s)	375
AciI	CCGC	8 cut(s)	45, 205, 678, 687, 726, 882, 885, 888
AclWI	GGATC	1 cut(s)	666
AcoI	YGGCCR	2 cut(s)	213, 288
AcvI	CACGTG	1 cut(s)	718
AcyI	GRCGYC	1 cut(s)	756
AdeI	CACNNNGTG	1 cut(s)	478
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	5 cut(s)	35, 211, 802, 829, 911
AflIII	ACRYGT	1 cut(s)	51
AjiI	CACGTC	1 cut(s)	646
AjnI	CCWGG	4 cut(s)	7, 108, 474, 589
AluBI	AGCT	8 cut(s)	243, 275, 286, 298, 367, 451, 669, 750
AluI	AGCT	8 cut(s)	243, 275, 286, 298, 367, 451, 669, 750
Alw21I	GWGCWC	1 cut(s)	671
Alw26I	GTCTC	2 cut(s)	242, 575
AlwI	GGATC	1 cut(s)	666
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	6 cut(s)	10, 89, 106, 213, 288, 706
ApeKI	GCWGC	9 cut(s)	283, 304, 307, 364, 530, 840, 895, 898, 901
AspLEI	GCGC	4 cut(s)	204, 283, 375, 683
AspS9I	GGNCC	4 cut(s)	89, 707, 820, 939
AsuC2I	CCSGG	1 cut(s)	673
AsuHPI	GGTGA	6 cut(s)	83, 464, 554, 605, 740, 785
AvaI	CYCGRG	1 cut(s)	62
AvaII	GGWCC	2 cut(s)	820, 939
BalI	TGGCCA	1 cut(s)	290
BanII	GRGCYC	2 cut(s)	349, 671
BbrPI	CACGTG	1 cut(s)	718
BbsI	GAAGAC	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	671
BbvCI	CCTCAGC	2 cut(s)	30, 711
BbvI	GCAGC	9 cut(s)	291, 295, 319, 376, 542, 852, 907, 910, 913
BccI	CCATC	2 cut(s)	830, 916
BceAI	ACGGC	2 cut(s)	228, 674
BciT130I	CCWGG	4 cut(s)	9, 110, 476, 591
BclI	TGATCA	4 cut(s)	73, 544, 606, 787
BcnI	CCSGG	1 cut(s)	673
BcoDI	GTCTC	2 cut(s)	242, 575
BfaI	CTAG	1 cut(s)	809
BfmI	CTRYAG	1 cut(s)	305
BfoI	RGCGCY	2 cut(s)	205, 684
BfuAI	ACCTGC	2 cut(s)	211, 530
Bme1390I	CCNGG	5 cut(s)	9, 110, 476, 591, 673
Bme18I	GGWCC	2 cut(s)	820, 939
BmeT110I	CYCGRG	1 cut(s)	62
BmgBI	CACGTC	1 cut(s)	646
BmgT120I	GGNCC	4 cut(s)	89, 707, 820, 939
BmiI	GGNNCC	4 cut(s)	6, 267, 332, 821
BmrFI	CCNGG	5 cut(s)	9, 110, 476, 591, 673
BmsI	GCATC	2 cut(s)	177, 235
BpiI	GAAGAC	1 cut(s)	362
BpmI	CTGGAG	4 cut(s)	131, 254, 284, 620
Bpu10I	CCTNAGC	5 cut(s)	30, 276, 299, 665, 711
BpuEI	CTTGAG	3 cut(s)	389, 419, 521
BpuMI	CCSGG	1 cut(s)	673
Bsa29I	ATCGAT	1 cut(s)	98
BsaAI	YACGTR	1 cut(s)	718
BsaBI	GATNNNNATC	1 cut(s)	549
BsaHI	GRCGYC	1 cut(s)	756
BsaJI	CCNNGG	3 cut(s)	61, 85, 690
BsaXI	ACNNNNNCTCC	2 cut(s)	902, 932
Bsc4I	CCNNNNNNNGG	5 cut(s)	35, 211, 802, 829, 911
Bse1I	ACTGG	2 cut(s)	267, 637
Bse8I	GATNNNNATC	1 cut(s)	549
BseBI	CCWGG	4 cut(s)	9, 110, 476, 591
BseCI	ATCGAT	1 cut(s)	98
BseDI	CCNNGG	3 cut(s)	61, 85, 690
BseGI	GGATG	2 cut(s)	619, 775
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	5 cut(s)	35, 211, 802, 829, 911
BseMII	CTCAG	4 cut(s)	44, 483, 656, 725
BseNI	ACTGG	2 cut(s)	267, 637
BseRI	GAGGAG	4 cut(s)	139, 179, 762, 923
BseX3I	CGGCCG	1 cut(s)	213
BseXI	GCAGC	9 cut(s)	291, 295, 319, 376, 542, 852, 907, 910, 913
Bsh1236I	CGCG	1 cut(s)	375
Bsh1285I	CGRYCG	3 cut(s)	134, 216, 853
BshFI	GGCC	6 cut(s)	12, 91, 108, 215, 290, 708
BshVI	ATCGAT	1 cut(s)	98
BsiEI	CGRYCG	3 cut(s)	134, 216, 853
BsiHKAI	GWGCWC	1 cut(s)	671
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	3 cut(s)	269, 672, 905
BslI	CCNNNNNNNGG	5 cut(s)	35, 211, 802, 829, 911
BsmAI	GTCTC	2 cut(s)	242, 575
BsmBI	CGTCTC	1 cut(s)	575
BsnI	GGCC	6 cut(s)	12, 91, 108, 215, 290, 708
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	349, 671
Bsp143I	GATC	8 cut(s)	73, 95, 131, 511, 544, 606, 658, 787
BspACI	CCGC	8 cut(s)	45, 205, 678, 687, 726, 882, 885, 888
BspANI	GGCC	6 cut(s)	12, 91, 108, 215, 290, 708
BspCNI	CTCAG	4 cut(s)	43, 484, 657, 724
BspDI	ATCGAT	1 cut(s)	98
BspFNI	CGCG	1 cut(s)	375
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	4 cut(s)	6, 267, 332, 821
BspMAI	CTGCAG	1 cut(s)	309
BspMI	ACCTGC	2 cut(s)	211, 530
BspPI	GGATC	1 cut(s)	666
BspQI	GCTCTTC	1 cut(s)	233
BsrBI	CCGCTC	1 cut(s)	678
BsrI	ACTGG	2 cut(s)	267, 637
BssECI	CCNNGG	3 cut(s)	61, 85, 690
BssMI	GATC	8 cut(s)	73, 95, 131, 511, 544, 606, 658, 787
BssNI	GRCGYC	1 cut(s)	756
Bst2UI	CCWGG	4 cut(s)	9, 110, 476, 591
Bst4CI	ACNGT	1 cut(s)	851
Bst6I	CTCTTC	1 cut(s)	233
BstACI	GRCGYC	1 cut(s)	756
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstBAI	YACGTR	1 cut(s)	718
BstC8I	GCNNGC	3 cut(s)	146, 288, 349
BstDEI	CTNAG	6 cut(s)	30, 276, 299, 492, 665, 711
BstDSI	CCRYGG	1 cut(s)	690
BstENI	CCTNNNNNAGG	1 cut(s)	33
BstF5I	GGATG	2 cut(s)	619, 775
BstFNI	CGCG	1 cut(s)	375
BstH2I	RGCGCY	2 cut(s)	205, 684
BstHHI	GCGC	4 cut(s)	204, 283, 375, 683
BstKTI	GATC	8 cut(s)	76, 98, 134, 514, 547, 609, 661, 790
BstMAI	GTCTC	2 cut(s)	242, 575
BstMBI	GATC	8 cut(s)	73, 95, 131, 511, 544, 606, 658, 787
BstMCI	CGRYCG	3 cut(s)	134, 216, 853
BstMWI	GCNNNNNNNGC	7 cut(s)	287, 304, 370, 536, 675, 884, 901
BstNI	CCWGG	4 cut(s)	9, 110, 476, 591
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	5 cut(s)	7, 108, 474, 589, 671
BstSFI	CTRYAG	1 cut(s)	305
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	9 cut(s)	291, 295, 319, 376, 542, 852, 907, 910, 913
BstV2I	GAAGAC	1 cut(s)	362
BstZI	CGGCCG	1 cut(s)	213
Bsu15I	ATCGAT	1 cut(s)	98
BsuRI	GGCC	6 cut(s)	12, 91, 108, 215, 290, 708
BsuTUI	ATCGAT	1 cut(s)	98
BtgI	CCRYGG	1 cut(s)	690
BtgZI	GCGATG	1 cut(s)	858
BtrI	CACGTC	1 cut(s)	646
BtsCI	GGATG	2 cut(s)	619, 775
BtsI	GCAGTG	1 cut(s)	796
BtsIMutI	CAGTG	1 cut(s)	796
BveI	ACCTGC	2 cut(s)	211, 530
Cac8I	GCNNGC	3 cut(s)	146, 288, 349
CciI	TCATGA	1 cut(s)	556
CfoI	GCGC	4 cut(s)	204, 283, 375, 683
Cfr13I	GGNCC	4 cut(s)	89, 707, 820, 939
ClaI	ATCGAT	1 cut(s)	98
CseI	GACGC	1 cut(s)	557
CsiI	ACCWGGT	1 cut(s)	474
Csp6I	GTAC	1 cut(s)	160
CspCI	CAANNNNNGTGG	2 cut(s)	300, 335
CviAII	CATG	4 cut(s)	52, 557, 785, 802
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	6 cut(s)	30, 276, 299, 492, 665, 711
DpnI	GATC	8 cut(s)	75, 97, 133, 513, 546, 608, 660, 789
DpnII	GATC	8 cut(s)	73, 95, 131, 511, 544, 606, 658, 787
DraIII	CACNNNGTG	1 cut(s)	478
EaeI	YGGCCR	2 cut(s)	213, 288
EagI	CGGCCG	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
EciI	GGCGGA	2 cut(s)	676, 871
Ecl136II	GAGCTC	1 cut(s)	669
EclXI	CGGCCG	1 cut(s)	213
Eco24I	GRGCYC	2 cut(s)	349, 671
Eco47I	GGWCC	2 cut(s)	820, 939
Eco52I	CGGCCG	1 cut(s)	213
Eco53kI	GAGCTC	1 cut(s)	669
Eco72I	CACGTG	1 cut(s)	718
Eco88I	CYCGRG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	669
EcoNI	CCTNNNNNAGG	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	707
EcoRII	CCWGG	4 cut(s)	7, 108, 474, 589
EcoT38I	GRGCYC	2 cut(s)	349, 671
Esp3I	CGTCTC	1 cut(s)	575
FaeI	CATG	4 cut(s)	55, 560, 788, 805
FaiI	YATR	8 cut(s)	53, 381, 402, 423, 488, 558, 786, 803
FatI	CATG	4 cut(s)	51, 556, 784, 801
FbaI	TGATCA	4 cut(s)	73, 544, 606, 787
FokI	GGATG	2 cut(s)	626, 762
FriOI	GRGCYC	2 cut(s)	349, 671
FspBI	CTAG	1 cut(s)	809
GlaI	GCGC	4 cut(s)	203, 282, 374, 682
GsuI	CTGGAG	4 cut(s)	131, 254, 284, 620
HaeII	RGCGCY	2 cut(s)	205, 684
HaeIII	GGCC	6 cut(s)	12, 91, 108, 215, 290, 708
HapII	CCGG	3 cut(s)	269, 672, 905
HgaI	GACGC	1 cut(s)	557
HhaI	GCGC	4 cut(s)	204, 283, 375, 683
Hin1I	GRCGYC	1 cut(s)	756
Hin1II	CATG	4 cut(s)	55, 560, 788, 805
Hin6I	GCGC	4 cut(s)	202, 281, 373, 681
HinP1I	GCGC	4 cut(s)	202, 281, 373, 681
HinfI	GANTC	6 cut(s)	337, 404, 425, 442, 463, 731
HpaII	CCGG	3 cut(s)	269, 672, 905
HphI	GGTGA	6 cut(s)	83, 464, 554, 605, 740, 785
Hpy166II	GTNNAC	4 cut(s)	697, 721, 760, 823
Hpy188I	TCNGA	7 cut(s)	86, 447, 460, 754, 829, 855, 868
Hpy188III	TCNNGA	4 cut(s)	64, 334, 515, 557
Hpy8I	GTNNAC	4 cut(s)	697, 721, 760, 823
Hpy99I	CGWCG	2 cut(s)	182, 647
HpyAV	CCTTC	2 cut(s)	643, 698
HpyCH4III	ACNGT	1 cut(s)	851
HpyCH4IV	ACGT	4 cut(s)	78, 645, 717, 756
HpyCH4V	TGCA	4 cut(s)	226, 307, 539, 801
HpyF10VI	GCNNNNNNNGC	7 cut(s)	287, 304, 370, 536, 675, 884, 901
HpyF3I	CTNAG	6 cut(s)	30, 276, 299, 492, 665, 711
HpySE526I	ACGT	4 cut(s)	78, 645, 717, 756
Hsp92I	GRCGYC	1 cut(s)	756
Hsp92II	CATG	4 cut(s)	55, 560, 788, 805
HspAI	GCGC	4 cut(s)	202, 281, 373, 681
Ksp22I	TGATCA	4 cut(s)	73, 544, 606, 787
Kzo9I	GATC	8 cut(s)	73, 95, 131, 511, 544, 606, 658, 787
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	5 cut(s)	4, 265, 527, 674, 675
Lsp1109I	GCAGC	9 cut(s)	291, 295, 319, 376, 542, 852, 907, 910, 913
LweI	GCATC	2 cut(s)	177, 235
MabI	ACCWGGT	1 cut(s)	474
MaeI	CTAG	1 cut(s)	809
MaeII	ACGT	4 cut(s)	78, 645, 717, 756
MaeIII	GTNAC	2 cut(s)	728, 857
MalI	GATC	8 cut(s)	75, 97, 133, 513, 546, 608, 660, 789
MbiI	CCGCTC	1 cut(s)	678
MboI	GATC	8 cut(s)	73, 95, 131, 511, 544, 606, 658, 787
MboII	GAAGA	5 cut(s)	208, 250, 367, 575, 578
MhlI	GDGCHC	2 cut(s)	349, 671
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	3 cut(s)	102, 155, 763
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	2 cut(s)	398, 725
MmeI	TCCRAC	1 cut(s)	833
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MslI	CAYNNNNRTG	2 cut(s)	555, 558
Msp20I	TGGCCA	1 cut(s)	290
MspA1I	CMGCKG	2 cut(s)	286, 726
MspI	CCGG	3 cut(s)	269, 672, 905
MspR9I	CCNGG	5 cut(s)	9, 110, 476, 591, 673
MvaI	CCWGG	4 cut(s)	9, 110, 476, 591
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	7 cut(s)	287, 304, 370, 536, 675, 884, 901
NciI	CCSGG	1 cut(s)	673
NdeII	GATC	8 cut(s)	73, 95, 131, 511, 544, 606, 658, 787
NlaIII	CATG	4 cut(s)	55, 560, 788, 805
NlaIV	GGNNCC	4 cut(s)	6, 267, 332, 821
NmeAIII	GCCGAG	2 cut(s)	117, 241
NmuCI	GTSAC	1 cut(s)	728
NspI	RCATGY	1 cut(s)	55
PagI	TCATGA	1 cut(s)	556
PaqCI	CACCTGC	2 cut(s)	211, 530
PciI	ACATGT	1 cut(s)	51
PciSI	GCTCTTC	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	840
PfeI	GAWTC	4 cut(s)	337, 425, 442, 463
PflMI	CCANNNNNTGG	1 cut(s)	802
PfoI	TCCNGGA	1 cut(s)	671
Ple19I	CGATCG	1 cut(s)	134
PleI	GAGTC	2 cut(s)	398, 725
PmaCI	CACGTG	1 cut(s)	718
PmlI	CACGTG	1 cut(s)	718
PpsI	GAGTC	2 cut(s)	398, 725
Ppu21I	YACGTR	1 cut(s)	718
PscI	ACATGT	1 cut(s)	51
Psp124BI	GAGCTC	1 cut(s)	671
Psp6I	CCWGG	4 cut(s)	7, 108, 474, 589
PspCI	CACGTG	1 cut(s)	718
PspGI	CCWGG	4 cut(s)	7, 108, 474, 589
PspN4I	GGNNCC	4 cut(s)	6, 267, 332, 821
PspPI	GGNCC	4 cut(s)	89, 707, 820, 939
PstI	CTGCAG	1 cut(s)	309
PvuI	CGATCG	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	286
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	2 cut(s)	555, 558
SacI	GAGCTC	1 cut(s)	671
SapI	GCTCTTC	1 cut(s)	233
Sau3AI	GATC	8 cut(s)	73, 95, 131, 511, 544, 606, 658, 787
Sau96I	GGNCC	4 cut(s)	89, 707, 820, 939
SchI	GAGTC	2 cut(s)	398, 725
ScrFI	CCNGG	5 cut(s)	9, 110, 476, 591, 673
SduI	GDGCHC	2 cut(s)	349, 671
SexAI	ACCWGGT	1 cut(s)	474
SfaNI	GCATC	2 cut(s)	177, 235
SfcI	CTRYAG	1 cut(s)	305
SinI	GGWCC	2 cut(s)	820, 939
SmiMI	CAYNNNNRTG	2 cut(s)	555, 558
SmlI	CTYRAG	3 cut(s)	368, 434, 500
SmoI	CTYRAG	3 cut(s)	368, 434, 500
Sse9I	AATT	3 cut(s)	102, 155, 763
SsiI	CCGC	8 cut(s)	45, 205, 678, 687, 726, 882, 885, 888
SspI	AATATT	1 cut(s)	173
SspMI	CTAG	1 cut(s)	809
SstI	GAGCTC	1 cut(s)	671
StyD4I	CCNGG	5 cut(s)	7, 108, 474, 589, 671
TaaI	ACNGT	1 cut(s)	851
TaiI	ACGT	4 cut(s)	81, 648, 720, 759
TaqI	TCGA	4 cut(s)	98, 122, 642, 920
TasI	AATT	3 cut(s)	102, 155, 763
TauI	GCSGC	5 cut(s)	48, 207, 681, 887, 890
TfiI	GAWTC	4 cut(s)	337, 425, 442, 463
TscAI	CASTG	1 cut(s)	803
TseFI	GTSAC	1 cut(s)	728
TseI	GCWGC	9 cut(s)	283, 304, 307, 364, 530, 840, 895, 898, 901
Tsp45I	GTSAC	1 cut(s)	728
TspDTI	ATGAA	1 cut(s)	168
TspGWI	ACGGA	1 cut(s)	626
TspRI	CASTG	1 cut(s)	803
Van91I	CCANNNNNTGG	1 cut(s)	802
VpaK11BI	GGWCC	2 cut(s)	820, 939
XagI	CCTNNNNNAGG	1 cut(s)	33
XceI	RCATGY	1 cut(s)	55
XspI	CTAG	1 cut(s)	809
ZraI	GACGTC	1 cut(s)	757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.