Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008725

Physical Location & Seq

Genomic Coordinates Reverse (-)

25741526 .. 25743765

Gene Structure 2240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G283200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGAGCCGTGCCGTTTTTTCTTTGACCCTTCGACGACATCGTCCGCTTGCCAGCAAGGTGGTGGCAACATGCTGTTCCTCGGGAATGCTGATCACGTTTTTCGAGGGCCGAAATCGGTTATGGGATTGATGGATCAAGAAAGCTCGAGGAGGAGAAGTTTTTTCAGCTCATCGTCATCGCAAGACGAACTGTTCGACGAAGAATATTACGACGAGCAGTTGCCGGAAAAGAAGCGCCGCCTCACTCCTGACCAGGTGCATATGCTGGAGAAGAGCTTTGAGACAGAGAACAAGCTGGAGCCAGAGAGGAAGACGCAGCTGGCCAAGAAGCTGGGGCTGCAGCCAAGGCAGGTGGCTGTGTGGTTCCAGAACCGCAGGGCTCGCTGGAAGACAAAGCAGCTCGAGCGCGATTATGATCTTCTCAAATCTTCTTATGACTCCCTTTTGTCTAATTATGATTCTATCCTTAAGGAGAATCACAAGCTCAAATCCGAGGTGGTTTCCATAAACCAGAAACTTGAAACTAAAGAGGAGACCAGCAATATCAAAGCAGCAGCATTTGCACCTGATCATGCTGACGACGACAAGTGCGACCCTCTTGTTCCTGCTGGTGATGAGATGAGGGATGCTGTTCCAATAAGCTATGCCGCTGGTCTGCAATATAGCTGCAGCGTCAAAGTTGAGGACCGCCTGAGTTCCGGGAGCGGAGGAAGCGCAGTGGTGGACGAGGTCGAAGGTCCTCAGCTTGTGGACAGCGGCGACTCCTACAATTTTCTCAACGAGGACAACGTCCACAATAATTACCCTCATCATCATCATCATCATAGTGGGGTCAACTCAGAAGAAGACGACGGCAGTGACGACGGGCGGGGTTACTTCTCCGATGTGTTTGCGGCTGCCGTGGAGGAGCAGGTACAGCAGGAGGAGGGTGTGTCTATGGGCTGGTGGGTGTGGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

320

Amino Acids

36.13

Weight (kDa)

4.87

Isoelectric Point (pI)

58.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20280 AT1G61200 AT3G01470
fragaria_vesca	FvH4_6g50570
malus_domestica	MD09G1035100.v1.1 MD13G1014900.v1.1 MD13G1196700.v1.1 MD17G1035400.v1.1
prunus_persica	Prupe.3G283200_v2.0.a1
pyrus_communis	pycom111g02800 pycom17g03260
rosa_chinensis	RchiOBHm_Chr2g0171091
rosa_laevigata	RLG00000022002
rosa_multiflora	Rmu_sc0004565.1_g000009 Rmu_sc0007623.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080820
rosa_rugosa	Rorug02G0553600
rosa_samantha	Rh2AG627200 Rh2BG637100 Rh2CG606100 Rh2DG648700 Rh2DG654300
rosa_wichuraiana	Rw2G051910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	340
AasI	GACNNNNNNGTC	1 cut(s)	40
Acc36I	ACCTGC	2 cut(s)	340, 901
AccBSI	CCGCTC	1 cut(s)	705
AccII	CGCG	1 cut(s)	408
AciI	CCGC	9 cut(s)	45, 238, 373, 648, 688, 705, 756, 868, 893
AclWI	GGATC	1 cut(s)	141
AcoI	YGGCCR	1 cut(s)	321
AfaI	GTAC	1 cut(s)	915
AflII	CTTAAG	1 cut(s)	467
AgsI	TTSAA	1 cut(s)	521
AjnI	CCWGG	1 cut(s)	252
Alw26I	GTCTC	2 cut(s)	275, 527
AlwI	GGATC	1 cut(s)	141
Ama87I	CYCGRG	3 cut(s)	80, 145, 401
AoxI	GGCC	2 cut(s)	107, 321
ApeKI	GCWGC	9 cut(s)	316, 337, 340, 397, 551, 554, 666, 669, 896
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AspLEI	GCGC	3 cut(s)	237, 408, 716
AspS9I	GGNCC	4 cut(s)	107, 685, 737, 954
AsuC2I	CCSGG	1 cut(s)	700
AsuHPI	GGTGA	1 cut(s)	623
AvaI	CYCGRG	3 cut(s)	80, 145, 401
AvaII	GGWCC	3 cut(s)	685, 737, 954
BalI	TGGCCA	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	382
BbsI	GAAGAC	3 cut(s)	317, 395, 852
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	9 cut(s)	324, 328, 352, 409, 563, 566, 653, 681, 883
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	2 cut(s)	868, 884
BcgI	CGANNNNNNTGC	2 cut(s)	872, 906
BciT130I	CCWGG	1 cut(s)	254
BclI	TGATCA	2 cut(s)	91, 568
BcnI	CCSGG	1 cut(s)	700
BcoDI	GTCTC	2 cut(s)	275, 527
BfmI	CTRYAG	2 cut(s)	338, 667
BfoI	RGCGCY	1 cut(s)	238
BfrI	CTTAAG	1 cut(s)	467
BfuAI	ACCTGC	2 cut(s)	340, 901
Bme1390I	CCNGG	2 cut(s)	254, 700
Bme18I	GGWCC	3 cut(s)	685, 737, 954
BmeT110I	CYCGRG	3 cut(s)	80, 145, 401
BmgT120I	GGNCC	4 cut(s)	107, 685, 737, 954
BmiI	GGNNCC	3 cut(s)	6, 300, 365
BmrFI	CCNGG	2 cut(s)	254, 700
BmsI	GCATC	1 cut(s)	616
BpiI	GAAGAC	3 cut(s)	317, 395, 852
BpmI	CTGGAG	2 cut(s)	287, 317
Bpu10I	CCTNAGC	1 cut(s)	741
BpuMI	CCSGG	1 cut(s)	700
BsaBI	GATNNNNATC	1 cut(s)	414
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	4 cut(s)	79, 344, 492, 900
BsaXI	ACNNNNNCTCC	4 cut(s)	142, 172, 917, 947
Bse8I	GATNNNNATC	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	4 cut(s)	79, 344, 492, 900
BseGI	GGATG	1 cut(s)	631
BseJI	GATNNNNATC	1 cut(s)	414
BseMII	CTCAG	3 cut(s)	683, 755, 852
BseRI	GAGGAG	5 cut(s)	163, 166, 545, 920, 938
BseXI	GCAGC	9 cut(s)	324, 328, 352, 409, 563, 566, 653, 681, 883
BseYI	CCCAGC	1 cut(s)	331
Bsh1236I	CGCG	1 cut(s)	408
BshFI	GGCC	2 cut(s)	109, 323
BsiHKCI	CYCGRG	3 cut(s)	80, 145, 401
BsiSI	CCGG	2 cut(s)	224, 699
BsmAI	GTCTC	2 cut(s)	275, 527
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	109, 323
Bso31I	GGTCTC	1 cut(s)	527
BsoBI	CYCGRG	3 cut(s)	80, 145, 401
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	4 cut(s)	91, 133, 415, 568
BspACI	CCGC	9 cut(s)	45, 238, 373, 648, 688, 705, 756, 868, 893
BspANI	GGCC	2 cut(s)	109, 323
BspCNI	CTCAG	3 cut(s)	684, 754, 851
BspFNI	CGCG	1 cut(s)	408
BspLI	GGNNCC	3 cut(s)	6, 300, 365
BspMAI	CTGCAG	2 cut(s)	342, 671
BspMI	ACCTGC	2 cut(s)	340, 901
BspPI	GGATC	1 cut(s)	141
BspQI	GCTCTTC	1 cut(s)	266
BspTI	CTTAAG	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	527
BsrBI	CCGCTC	1 cut(s)	705
BssECI	CCNNGG	4 cut(s)	79, 344, 492, 900
BssMI	GATC	4 cut(s)	91, 133, 415, 568
BssT1I	CCWWGG	1 cut(s)	344
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	266
BstAFI	CTTAAG	1 cut(s)	467
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstC8I	GCNNGC	4 cut(s)	49, 53, 321, 382
BstDEI	CTNAG	3 cut(s)	692, 741, 838
BstDSI	CCRYGG	1 cut(s)	900
BstF5I	GGATG	1 cut(s)	631
BstFNI	CGCG	1 cut(s)	408
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	3 cut(s)	237, 408, 716
BstKTI	GATC	4 cut(s)	94, 136, 418, 571
BstMAI	GTCTC	2 cut(s)	275, 527
BstMBI	GATC	4 cut(s)	91, 133, 415, 568
BstMWI	GCNNNNNNNGC	7 cut(s)	337, 346, 381, 403, 560, 711, 916
BstNI	CCWGG	1 cut(s)	254
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	252, 698
BstSFI	CTRYAG	2 cut(s)	338, 667
BstUI	CGCG	1 cut(s)	408
BstV1I	GCAGC	9 cut(s)	324, 328, 352, 409, 563, 566, 653, 681, 883
BstV2I	GAAGAC	3 cut(s)	317, 395, 852
BstXI	CCANNNNNNTGG	2 cut(s)	59, 331
BsuRI	GGCC	2 cut(s)	109, 323
BtgI	CCRYGG	1 cut(s)	900
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	631
BtsI	GCAGTG	2 cut(s)	723, 862
BtsIMutI	CAGTG	2 cut(s)	723, 862
BveI	ACCTGC	2 cut(s)	340, 901
Cac8I	GCNNGC	4 cut(s)	49, 53, 321, 382
CfoI	GCGC	3 cut(s)	237, 408, 716
Cfr13I	GGNCC	4 cut(s)	107, 685, 737, 954
CseI	GACGC	2 cut(s)	322, 661
CsiI	ACCWGGT	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	914
CspCI	CAANNNNNGTGG	2 cut(s)	333, 368
CviAII	CATG	2 cut(s)	70, 572
CviQI	GTAC	1 cut(s)	914
DdeI	CTNAG	3 cut(s)	692, 741, 838
DpnI	GATC	4 cut(s)	93, 135, 417, 570
DpnII	GATC	4 cut(s)	91, 133, 415, 568
DrdI	GACNNNNNNGTC	1 cut(s)	40
DseDI	GACNNNNNNGTC	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Eco130I	CCWWGG	1 cut(s)	344
Eco24I	GRGCYC	1 cut(s)	382
Eco31I	GGTCTC	1 cut(s)	527
Eco47I	GGWCC	3 cut(s)	685, 737, 954
Eco88I	CYCGRG	3 cut(s)	80, 145, 401
EcoO109I	RGGNCCY	1 cut(s)	737
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	344
EcoT38I	GRGCYC	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	344
FaeI	CATG	2 cut(s)	73, 575
FatI	CATG	2 cut(s)	69, 571
FauI	CCCGC	1 cut(s)	861
FauNDI	CATATG	1 cut(s)	261
FbaI	TGATCA	2 cut(s)	91, 568
FokI	GGATG	1 cut(s)	638
FriOI	GRGCYC	1 cut(s)	382
GlaI	GCGC	3 cut(s)	236, 407, 715
GsaI	CCCAGC	1 cut(s)	335
GsuI	CTGGAG	2 cut(s)	287, 317
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	2 cut(s)	109, 323
HapII	CCGG	2 cut(s)	224, 699
HgaI	GACGC	2 cut(s)	322, 661
HhaI	GCGC	3 cut(s)	237, 408, 716
Hin1II	CATG	2 cut(s)	73, 575
Hin6I	GCGC	3 cut(s)	235, 406, 714
HinP1I	GCGC	3 cut(s)	235, 406, 714
HincII	GTYRAC	1 cut(s)	835
HindII	GTYRAC	1 cut(s)	835
HinfI	GANTC	4 cut(s)	437, 458, 475, 761
HpaII	CCGG	2 cut(s)	224, 699
HphI	GGTGA	1 cut(s)	623
Hpy166II	GTNNAC	4 cut(s)	724, 751, 793, 835
Hpy188I	TCNGA	3 cut(s)	493, 841, 883
Hpy188III	TCNNGA	4 cut(s)	82, 137, 248, 367
Hpy8I	GTNNAC	4 cut(s)	724, 751, 793, 835
Hpy99I	CGWCG	6 cut(s)	37, 200, 215, 584, 854, 866
HpyAV	CCTTC	2 cut(s)	39, 728
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	2 cut(s)	96, 789
HpyCH4V	TGCA	5 cut(s)	259, 340, 563, 658, 669
HpyF10VI	GCNNNNNNNGC	7 cut(s)	337, 346, 381, 403, 560, 711, 916
HpyF3I	CTNAG	3 cut(s)	692, 741, 838
HpySE526I	ACGT	2 cut(s)	96, 789
Hsp92II	CATG	2 cut(s)	73, 575
HspAI	GCGC	3 cut(s)	235, 406, 714
Ksp22I	TGATCA	2 cut(s)	91, 568
Kzo9I	GATC	4 cut(s)	91, 133, 415, 568
LguI	GCTCTTC	1 cut(s)	266
LmnI	GCTCC	4 cut(s)	4, 298, 702, 907
Lsp1109I	GCAGC	9 cut(s)	324, 328, 352, 409, 563, 566, 653, 681, 883
LweI	GCATC	1 cut(s)	616
MabI	ACCWGGT	1 cut(s)	252
MaeII	ACGT	2 cut(s)	96, 789
MaeIII	GTNAC	2 cut(s)	857, 872
MalI	GATC	4 cut(s)	93, 135, 417, 570
MbiI	CCGCTC	1 cut(s)	705
MboI	GATC	4 cut(s)	91, 133, 415, 568
MboII	GAAGA	8 cut(s)	212, 283, 322, 400, 410, 420, 854, 857
MhlI	GDGCHC	1 cut(s)	382
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	3 cut(s)	451, 769, 799
MluNI	TGGCCA	1 cut(s)	323
MlyI	GAGTC	2 cut(s)	431, 755
Mox20I	TGGCCA	1 cut(s)	323
MscI	TGGCCA	1 cut(s)	323
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	825
Msp20I	TGGCCA	1 cut(s)	323
MspA1I	CMGCKG	3 cut(s)	319, 650, 756
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	2 cut(s)	224, 699
MspR9I	CCNGG	2 cut(s)	254, 700
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	254
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	7 cut(s)	337, 346, 381, 403, 560, 711, 916
NciI	CCSGG	1 cut(s)	700
NdeI	CATATG	1 cut(s)	261
NdeII	GATC	4 cut(s)	91, 133, 415, 568
NlaIII	CATG	2 cut(s)	73, 575
NlaIV	GGNNCC	3 cut(s)	6, 300, 365
NmuCI	GTSAC	1 cut(s)	857
NspI	RCATGY	1 cut(s)	73
PaeR7I	CTCGAG	2 cut(s)	145, 401
PaqCI	CACCTGC	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	5 cut(s)	38, 192, 588, 786, 858
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	2 cut(s)	458, 475
PflFI	GACNNNGTC	3 cut(s)	40, 728, 788
PfoI	TCCNGGA	1 cut(s)	698
PleI	GAGTC	2 cut(s)	431, 755
PpsI	GAGTC	2 cut(s)	431, 755
PpuMI	RGGWCCY	1 cut(s)	737
Psp5II	RGGWCCY	1 cut(s)	737
Psp6I	CCWGG	1 cut(s)	252
PspFI	CCCAGC	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	3 cut(s)	6, 300, 365
PspPI	GGNCC	4 cut(s)	107, 685, 737, 954
PspPPI	RGGWCCY	1 cut(s)	737
PspXI	VCTCGAGB	2 cut(s)	145, 401
PstI	CTGCAG	2 cut(s)	342, 671
PsyI	GACNNNGTC	3 cut(s)	40, 728, 788
PvuII	CAGCTG	1 cut(s)	319
RsaI	GTAC	1 cut(s)	915
RsaNI	GTAC	1 cut(s)	914
RseI	CAYNNNNRTG	1 cut(s)	825
SapI	GCTCTTC	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	468
Sau3AI	GATC	4 cut(s)	91, 133, 415, 568
Sau96I	GGNCC	4 cut(s)	107, 685, 737, 954
SchI	GAGTC	2 cut(s)	431, 755
ScrFI	CCNGG	2 cut(s)	254, 700
SduI	GDGCHC	1 cut(s)	382
SexAI	ACCWGGT	1 cut(s)	252
SfaNI	GCATC	1 cut(s)	616
SfcI	CTRYAG	2 cut(s)	338, 667
Sfr274I	CTCGAG	2 cut(s)	145, 401
SinI	GGWCC	3 cut(s)	685, 737, 954
SlaI	CTCGAG	2 cut(s)	145, 401
SmiMI	CAYNNNNRTG	1 cut(s)	825
SmlI	CTYRAG	3 cut(s)	145, 401, 467
SmoI	CTYRAG	3 cut(s)	145, 401, 467
Sse9I	AATT	3 cut(s)	451, 769, 799
SsiI	CCGC	9 cut(s)	45, 238, 373, 648, 688, 705, 756, 868, 893
SspI	AATATT	1 cut(s)	206
StyD4I	CCNGG	2 cut(s)	252, 698
StyI	CCWWGG	1 cut(s)	344
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	2 cut(s)	99, 792
TaqI	TCGA	6 cut(s)	32, 103, 146, 195, 402, 732
TasI	AATT	3 cut(s)	451, 769, 799
TauI	GCSGC	4 cut(s)	240, 650, 759, 896
TfiI	GAWTC	2 cut(s)	458, 475
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	2 cut(s)	723, 862
TseFI	GTSAC	1 cut(s)	857
TseI	GCWGC	9 cut(s)	316, 337, 340, 397, 551, 554, 666, 669, 896
Tsp45I	GTSAC	1 cut(s)	857
TspRI	CASTG	2 cut(s)	723, 862
Tth111I	GACNNNGTC	3 cut(s)	40, 728, 788
Vha464I	CTTAAG	1 cut(s)	467
VpaK11BI	GGWCC	3 cut(s)	685, 737, 954
XceI	RCATGY	1 cut(s)	73
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59
XhoI	CTCGAG	2 cut(s)	145, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.