Rh2DG654300

Homeobox-leucine zipper protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
87913814 .. 87916079
2266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG654300.1

Sequence Viewer

Length: 939 bp
ATGGAGCCAGGCCGTCTTTTCTTTGAGCCTCAGCAAGGTGGTGGCGGCAACATGTTGTTCCTCGGGAGTGGTGATCACGTTTTCCGAGGGCCGAGATCGATAATTGGCATGGAGGAAACTTCGAGGAGGCGATCCTTTTTCAGCACGCAAGAAGAATTGTACGAGGAGGAATATTACGACGAGCAGATGCCAGAGAAGAAGCGCCGCCTCACGGCCGAGCAGGTGCATCTGCTGGAGAAGAGCTTTGAGACAGATAACAAACTGGAGCCAGATCGGAAGACGCAGCTGGCCAAGAAGCTAGGGCTGCAGCCAAGACAGGTGGCTGTGTGGTTCCAGAATCGTAGGGCTCGCTGGAAGACAAAGCAGCTTGAGCGCGATTATGATGTTCTAAAAGCCTCTTATGACTCCCTTTTGGCTAACTATGATTCTATCCTCAAGGAGAATCAGAAGCTCAAATCCGAGGTGGTCGCCATAACTGAGAAACTTGAAGCTAAAGATCAGGAGGAAAAAGGAGCAGCATTTGCAGGTGATCATCATCATCATGATGAGAAGCGTCTCCCTGGTCATCTTCTTCCAGGTGAGAAAGAGATGATCACGGATGTCAATGTTCCAATGAGCCTCCAGTTCGATGTGAAGGTTGAGGATCGCCTGAGCTCCGGGAGCGGTGCTTCCGCCGTGGTGGACGAGGAAGGCCCTCAGCACGTGGACAGCGGTGACTCGTATTTCCCAAGTAGCTCTGACGTCCACAATTATCCTCCTCCTCATCCTCCACATGATCATCACCACTGCATGGGGCTAGTAGGTGGGGTCCACTCGGAGGACGATGGCAGCGATGACGGTCGGAGTTACTTCTCTGATGTGTTTGCCGCCGCCGCCGCAGAGCAGCAGCAGCAGCAGCCGGAGGATGGCGTGTCGATGGGCTGGTGGGTGTGGTCCTAA

Protein Analysis

312

Amino Acids

35.44

Weight (kDa)

5.15

Isoelectric Point (pI)

63.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 66 - 119 3.6e-18 Homeodomain
HALZ PF02183 121 - 162 4.5e-18 Homeobox associated leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 211, 515
AatII GACGTC 1 cut(s) 744
Acc36I ACCTGC 2 cut(s) 211, 515
AccB7I CCANNNNNTGG 1 cut(s) 790
AccBSI CCGCTC 1 cut(s) 663
AccII CGCG 1 cut(s) 375
AciI CCGC 9 cut(s) 45, 205, 663, 672, 711, 867, 870, 873, 876
AclWI GGATC 2 cut(s) 126, 651
AcoI YGGCCR 2 cut(s) 213, 288
AcvI CACGTG 1 cut(s) 703
AcyI GRCGYC 1 cut(s) 741
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 5 cut(s) 35, 211, 790, 817, 905
AflIII ACRYGT 1 cut(s) 51
AgsI TTSAA 1 cut(s) 488
AjnI CCWGG 3 cut(s) 7, 559, 574
AluBI AGCT 8 cut(s) 243, 286, 298, 367, 451, 491, 654, 735
AluI AGCT 8 cut(s) 243, 286, 298, 367, 451, 491, 654, 735
Alw21I GWGCWC 1 cut(s) 656
Alw26I GTCTC 2 cut(s) 242, 560
AlwI GGATC 2 cut(s) 126, 651
Ama87I CYCGRG 1 cut(s) 62
AoxI GGCC 5 cut(s) 10, 89, 213, 288, 691
AspLEI GCGC 2 cut(s) 204, 375
AspS9I GGNCC 4 cut(s) 89, 692, 808, 933
AsuC2I CCSGG 1 cut(s) 658
AsuHPI GGTGA 5 cut(s) 83, 539, 590, 725, 773
AvaI CYCGRG 1 cut(s) 62
AvaII GGWCC 2 cut(s) 808, 933
BalI TGGCCA 1 cut(s) 290
BanII GRGCYC 2 cut(s) 349, 656
BbrPI CACGTG 1 cut(s) 703
BbsI GAAGAC 2 cut(s) 284, 362
Bbv12I GWGCWC 1 cut(s) 656
BbvCI CCTCAGC 2 cut(s) 30, 696
BccI CCATC 3 cut(s) 818, 899, 910
BceAI ACGGC 2 cut(s) 228, 659
BciT130I CCWGG 3 cut(s) 9, 561, 576
BclI TGATCA 4 cut(s) 73, 529, 591, 775
BcnI CCSGG 1 cut(s) 658
BcoDI GTCTC 2 cut(s) 242, 560
BfaI CTAG 2 cut(s) 299, 797
BfmI CTRYAG 1 cut(s) 305
BfoI RGCGCY 1 cut(s) 205
BfuAI ACCTGC 2 cut(s) 211, 515
Bme1390I CCNGG 4 cut(s) 9, 561, 576, 658
Bme18I GGWCC 2 cut(s) 808, 933
BmeT110I CYCGRG 1 cut(s) 62
BmgT120I GGNCC 4 cut(s) 89, 692, 808, 933
BmiI GGNNCC 4 cut(s) 6, 267, 332, 809
BmrFI CCNGG 4 cut(s) 9, 561, 576, 658
BmsI GCATC 2 cut(s) 177, 235
BpiI GAAGAC 2 cut(s) 284, 362
BpmI CTGGAG 3 cut(s) 254, 284, 605
Bpu10I CCTNAGC 3 cut(s) 30, 650, 696
BpuEI CTTGAG 2 cut(s) 389, 419
BpuMI CCSGG 1 cut(s) 658
Bsa29I ATCGAT 1 cut(s) 98
BsaAI YACGTR 1 cut(s) 703
BsaBI GATNNNNATC 1 cut(s) 534
BsaHI GRCGYC 1 cut(s) 741
BsaJI CCNNGG 5 cut(s) 61, 85, 459, 559, 675
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 211, 790, 817, 905
Bse1I ACTGG 2 cut(s) 267, 622
Bse8I GATNNNNATC 1 cut(s) 534
BseBI CCWGG 3 cut(s) 9, 561, 576
BseCI ATCGAT 1 cut(s) 98
BseDI CCNNGG 5 cut(s) 61, 85, 459, 559, 675
BseGI GGATG 3 cut(s) 604, 763, 910
BseJI GATNNNNATC 1 cut(s) 534
BseLI CCNNNNNNNGG 5 cut(s) 35, 211, 790, 817, 905
BseMII CTCAG 4 cut(s) 44, 468, 641, 710
BseNI ACTGG 2 cut(s) 267, 622
BseRI GAGGAG 4 cut(s) 139, 179, 747, 750
BseX3I CGGCCG 1 cut(s) 213
Bsh1236I CGCG 1 cut(s) 375
Bsh1285I CGRYCG 2 cut(s) 216, 841
BshFI GGCC 5 cut(s) 12, 91, 215, 290, 693
BshVI ATCGAT 1 cut(s) 98
BsiEI CGRYCG 2 cut(s) 216, 841
BsiHKAI GWGCWC 1 cut(s) 656
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 2 cut(s) 657, 899
BslI CCNNNNNNNGG 5 cut(s) 35, 211, 790, 817, 905
BsmAI GTCTC 2 cut(s) 242, 560
BsmBI CGTCTC 1 cut(s) 560
BsnI GGCC 5 cut(s) 12, 91, 215, 290, 693
BsoBI CYCGRG 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 349, 656
Bsp143I GATC 9 cut(s) 73, 95, 131, 271, 496, 529, 591, 643, 775
BspACI CCGC 9 cut(s) 45, 205, 663, 672, 711, 867, 870, 873, 876
BspANI GGCC 5 cut(s) 12, 91, 215, 290, 693
BspCNI CTCAG 4 cut(s) 43, 469, 642, 709
BspDI ATCGAT 1 cut(s) 98
BspFNI CGCG 1 cut(s) 375
BspHI TCATGA 1 cut(s) 541
BspLI GGNNCC 4 cut(s) 6, 267, 332, 809
BspMAI CTGCAG 1 cut(s) 309
BspMI ACCTGC 2 cut(s) 211, 515
BspPI GGATC 2 cut(s) 126, 651
BspQI GCTCTTC 1 cut(s) 233
BsrBI CCGCTC 1 cut(s) 663
BsrI ACTGG 2 cut(s) 267, 622
BssECI CCNNGG 5 cut(s) 61, 85, 459, 559, 675
BssMI GATC 9 cut(s) 73, 95, 131, 271, 496, 529, 591, 643, 775
BssNI GRCGYC 1 cut(s) 741
Bst2UI CCWGG 3 cut(s) 9, 561, 576
Bst4CI ACNGT 1 cut(s) 839
Bst6I CTCTTC 1 cut(s) 233
BstACI GRCGYC 1 cut(s) 741
BstAPI GCANNNNNTGC 1 cut(s) 521
BstBAI YACGTR 1 cut(s) 703
BstC8I GCNNGC 3 cut(s) 146, 288, 349
BstDEI CTNAG 4 cut(s) 30, 477, 650, 696
BstDSI CCRYGG 1 cut(s) 675
BstENI CCTNNNNNAGG 1 cut(s) 33
BstF5I GGATG 3 cut(s) 604, 763, 910
BstFNI CGCG 1 cut(s) 375
BstH2I RGCGCY 1 cut(s) 205
BstHHI GCGC 2 cut(s) 204, 375
BstKTI GATC 9 cut(s) 76, 98, 134, 274, 499, 532, 594, 646, 778
BstMAI GTCTC 2 cut(s) 242, 560
BstMBI GATC 9 cut(s) 73, 95, 131, 271, 496, 529, 591, 643, 775
BstMCI CGRYCG 2 cut(s) 216, 841
BstMWI GCNNNNNNNGC 9 cut(s) 304, 370, 521, 660, 872, 875, 889, 892, 895
BstNI CCWGG 3 cut(s) 9, 561, 576
BstNSI RCATGY 1 cut(s) 55
BstSCI CCNGG 4 cut(s) 7, 559, 574, 656
BstSFI CTRYAG 1 cut(s) 305
BstUI CGCG 1 cut(s) 375
BstV2I GAAGAC 2 cut(s) 284, 362
BstZI CGGCCG 1 cut(s) 213
Bsu15I ATCGAT 1 cut(s) 98
BsuRI GGCC 5 cut(s) 12, 91, 215, 290, 693
BsuTUI ATCGAT 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 675
BtgZI GCGATG 1 cut(s) 846
BtsCI GGATG 3 cut(s) 604, 763, 910
BtsI GCAGTG 1 cut(s) 784
BtsIMutI CAGTG 1 cut(s) 784
BveI ACCTGC 2 cut(s) 211, 515
Cac8I GCNNGC 3 cut(s) 146, 288, 349
CciI TCATGA 1 cut(s) 541
CfoI GCGC 2 cut(s) 204, 375
Cfr13I GGNCC 4 cut(s) 89, 692, 808, 933
ClaI ATCGAT 1 cut(s) 98
CseI GACGC 2 cut(s) 289, 542
Csp6I GTAC 1 cut(s) 160
CspCI CAANNNNNGTGG 2 cut(s) 300, 335
CviAII CATG 5 cut(s) 52, 109, 542, 773, 790
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 4 cut(s) 30, 477, 650, 696
DpnI GATC 9 cut(s) 75, 97, 133, 273, 498, 531, 593, 645, 777
DpnII GATC 9 cut(s) 73, 95, 131, 271, 496, 529, 591, 643, 775
EaeI YGGCCR 2 cut(s) 213, 288
EagI CGGCCG 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
EciI GGCGGA 1 cut(s) 661
Ecl136II GAGCTC 1 cut(s) 654
EclXI CGGCCG 1 cut(s) 213
Eco24I GRGCYC 2 cut(s) 349, 656
Eco47I GGWCC 2 cut(s) 808, 933
Eco52I CGGCCG 1 cut(s) 213
Eco53kI GAGCTC 1 cut(s) 654
Eco72I CACGTG 1 cut(s) 703
Eco88I CYCGRG 1 cut(s) 62
EcoICRI GAGCTC 1 cut(s) 654
EcoNI CCTNNNNNAGG 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 692
EcoRII CCWGG 3 cut(s) 7, 559, 574
EcoT38I GRGCYC 2 cut(s) 349, 656
Esp3I CGTCTC 1 cut(s) 560
FaeI CATG 5 cut(s) 55, 112, 545, 776, 793
FaiI YATR 9 cut(s) 53, 110, 381, 402, 423, 473, 543, 774, 791
FatI CATG 5 cut(s) 51, 108, 541, 772, 789
FbaI TGATCA 4 cut(s) 73, 529, 591, 775
FokI GGATG 3 cut(s) 611, 750, 917
FriOI GRGCYC 2 cut(s) 349, 656
FspBI CTAG 2 cut(s) 299, 797
GlaI GCGC 2 cut(s) 203, 374
GsuI CTGGAG 3 cut(s) 254, 284, 605
HaeII RGCGCY 1 cut(s) 205
HaeIII GGCC 5 cut(s) 12, 91, 215, 290, 693
HapII CCGG 2 cut(s) 657, 899
HgaI GACGC 2 cut(s) 289, 542
HhaI GCGC 2 cut(s) 204, 375
Hin1I GRCGYC 1 cut(s) 741
Hin1II CATG 5 cut(s) 55, 112, 545, 776, 793
Hin6I GCGC 2 cut(s) 202, 373
HinP1I GCGC 2 cut(s) 202, 373
HinfI GANTC 5 cut(s) 337, 404, 425, 442, 716
HpaII CCGG 2 cut(s) 657, 899
HphI GGTGA 5 cut(s) 83, 539, 590, 725, 773
Hpy166II GTNNAC 4 cut(s) 682, 706, 745, 811
Hpy188I TCNGA 8 cut(s) 86, 276, 447, 460, 739, 817, 843, 856
Hpy188III TCNNGA 4 cut(s) 64, 334, 500, 542
Hpy8I GTNNAC 4 cut(s) 682, 706, 745, 811
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 628, 683
HpyCH4III ACNGT 1 cut(s) 839
HpyCH4IV ACGT 3 cut(s) 78, 702, 741
HpyCH4V TGCA 4 cut(s) 226, 307, 524, 789
HpyF10VI GCNNNNNNNGC 9 cut(s) 304, 370, 521, 660, 872, 875, 889, 892, 895
HpyF3I CTNAG 4 cut(s) 30, 477, 650, 696
HpySE526I ACGT 3 cut(s) 78, 702, 741
Hsp92I GRCGYC 1 cut(s) 741
Hsp92II CATG 5 cut(s) 55, 112, 545, 776, 793
HspAI GCGC 2 cut(s) 202, 373
Ksp22I TGATCA 4 cut(s) 73, 529, 591, 775
Kzo9I GATC 9 cut(s) 73, 95, 131, 271, 496, 529, 591, 643, 775
LguI GCTCTTC 1 cut(s) 233
LmnI GCTCC 5 cut(s) 4, 265, 512, 659, 660
LweI GCATC 2 cut(s) 177, 235
MaeI CTAG 2 cut(s) 299, 797
MaeII ACGT 3 cut(s) 78, 702, 741
MaeIII GTNAC 2 cut(s) 713, 845
MalI GATC 9 cut(s) 75, 97, 133, 273, 498, 531, 593, 645, 777
MbiI CCGCTC 1 cut(s) 663
MboI GATC 9 cut(s) 73, 95, 131, 271, 496, 529, 591, 643, 775
MboII GAAGA 7 cut(s) 164, 208, 250, 289, 367, 560, 563
MhlI GDGCHC 2 cut(s) 349, 656
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 3 cut(s) 102, 155, 748
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 2 cut(s) 398, 710
MmeI TCCRAC 1 cut(s) 821
Mox20I TGGCCA 1 cut(s) 290
MscI TGGCCA 1 cut(s) 290
MslI CAYNNNNRTG 2 cut(s) 540, 543
Msp20I TGGCCA 1 cut(s) 290
MspA1I CMGCKG 2 cut(s) 286, 711
MspI CCGG 2 cut(s) 657, 899
MspR9I CCNGG 4 cut(s) 9, 561, 576, 658
MvaI CCWGG 3 cut(s) 9, 561, 576
MvnI CGCG 1 cut(s) 375
MwoI GCNNNNNNNGC 9 cut(s) 304, 370, 521, 660, 872, 875, 889, 892, 895
NciI CCSGG 1 cut(s) 658
NdeII GATC 9 cut(s) 73, 95, 131, 271, 496, 529, 591, 643, 775
NlaIII CATG 5 cut(s) 55, 112, 545, 776, 793
NlaIV GGNNCC 4 cut(s) 6, 267, 332, 809
NmeAIII GCCGAG 2 cut(s) 117, 241
NmuCI GTSAC 1 cut(s) 713
NspI RCATGY 1 cut(s) 55
PagI TCATGA 1 cut(s) 541
PaqCI CACCTGC 2 cut(s) 211, 515
PciI ACATGT 1 cut(s) 51
PciSI GCTCTTC 1 cut(s) 233
PcsI WCGNNNNNNNCGW 1 cut(s) 828
PfeI GAWTC 3 cut(s) 337, 425, 442
PflMI CCANNNNNTGG 1 cut(s) 790
PfoI TCCNGGA 1 cut(s) 656
PleI GAGTC 2 cut(s) 398, 710
PmaCI CACGTG 1 cut(s) 703
PmlI CACGTG 1 cut(s) 703
PpsI GAGTC 2 cut(s) 398, 710
Ppu21I YACGTR 1 cut(s) 703
PscI ACATGT 1 cut(s) 51
Psp124BI GAGCTC 1 cut(s) 656
Psp6I CCWGG 3 cut(s) 7, 559, 574
PspCI CACGTG 1 cut(s) 703
PspGI CCWGG 3 cut(s) 7, 559, 574
PspN4I GGNNCC 4 cut(s) 6, 267, 332, 809
PspPI GGNCC 4 cut(s) 89, 692, 808, 933
PstI CTGCAG 1 cut(s) 309
PvuII CAGCTG 1 cut(s) 286
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 2 cut(s) 540, 543
SacI GAGCTC 1 cut(s) 656
SapI GCTCTTC 1 cut(s) 233
Sau3AI GATC 9 cut(s) 73, 95, 131, 271, 496, 529, 591, 643, 775
Sau96I GGNCC 4 cut(s) 89, 692, 808, 933
SchI GAGTC 2 cut(s) 398, 710
ScrFI CCNGG 4 cut(s) 9, 561, 576, 658
SduI GDGCHC 2 cut(s) 349, 656
SfaNI GCATC 2 cut(s) 177, 235
SfcI CTRYAG 1 cut(s) 305
SinI GGWCC 2 cut(s) 808, 933
SmiMI CAYNNNNRTG 2 cut(s) 540, 543
SmlI CTYRAG 2 cut(s) 368, 434
SmoI CTYRAG 2 cut(s) 368, 434
Sse9I AATT 3 cut(s) 102, 155, 748
SsiI CCGC 9 cut(s) 45, 205, 663, 672, 711, 867, 870, 873, 876
SspI AATATT 1 cut(s) 173
SspMI CTAG 2 cut(s) 299, 797
SstI GAGCTC 1 cut(s) 656
StyD4I CCNGG 4 cut(s) 7, 559, 574, 656
TaaI ACNGT 1 cut(s) 839
TaiI ACGT 3 cut(s) 81, 705, 744
TaqI TCGA 4 cut(s) 98, 122, 627, 914
TasI AATT 3 cut(s) 102, 155, 748
TauI GCSGC 6 cut(s) 48, 207, 869, 872, 875, 878
TfiI GAWTC 3 cut(s) 337, 425, 442
TscAI CASTG 1 cut(s) 791
TseFI GTSAC 1 cut(s) 713
Tsp45I GTSAC 1 cut(s) 713
TspGWI ACGGA 1 cut(s) 611
TspRI CASTG 1 cut(s) 791
Van91I CCANNNNNTGG 1 cut(s) 790
VpaK11BI GGWCC 2 cut(s) 808, 933
XagI CCTNNNNNAGG 1 cut(s) 33
XceI RCATGY 1 cut(s) 55
XspI CTAG 2 cut(s) 299, 797
ZraI GACGTC 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.