Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008725

Physical Location & Seq

Genomic Coordinates Reverse (-)

79867010 .. 79869251

Gene Structure 2242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022002

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGAGCCAGGCCGTCTTTTCTTTGAGCCTCAGCTAGGTGGCGGCGGCAACATGTTGTTCCTCGGGAGTGGTGATCACGTTTTCCGAGAGAAGAAGCGCCGCCTCACGGCCGAGCAGGTGCATCTGCTGGAGAATAGCTTTGAGACAGATAACAAACTGGAGCCGGATCGGAAGACGCAGCTGGCCAAGAAGCTAGGGCTGCAGCCAAGACAGGTGGCTGTGTGGTTCCAGAATCGTAGGGCTCGCTGGAAGACAAAGCAGCTTGAGCGCGATTATGATGTTCTAAAAGCCTCTTATGACTCCCTTTTGGCTAACTATGATTCTATCCTCAAGGAGAATCAGAAGCTCAAATCCGAGGTGGTCGCCATAACTGAGAAACTTGAAGCTAAAGATCAGGAGGAAAAAGGAGTAGCATTTGCAGGTGATCATCATCATCATGATGAGAAGCGTCTCCCTGTTCATCTTCTTCCAGGTGAGAAAGAGATGATCACGGATGTCAATGTTCCAATGAGCCTCCAGTTCGACGTGAAGGTTGAGGATCGCCTGAGCTCCGGGAGCGGCGCTTCCGCCGTGGTGGACGAGGAAGGCCCTCAGCACGTGGACAGCGGTGACTCGTATTTCCCAAGTAGTTCTGACGTCCACAATTATCCTCTTCCTCATCCTCCACATGATCATCACCACTGCATGGGGCTAGTAGATGGGGTCCACTCGGAGGAGGACGATGGCAGCGATGGCGGTCGGAGTTACTTCTCTGATGTGTTTTCCACCGCCGCTGCCGCAGCAGAGCAGCAGCAGCCGGAGGAGGGCGTGTCGATGGGTTGGTGGGTGTGGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

279

Amino Acids

31.3

Weight (kDa)

5.28

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	29 - 84	7.5e-18	Homeodomain
HALZ	PF02183	86 - 127	3.8e-18	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20280 AT1G61200 AT3G01470
fragaria_vesca	FvH4_6g50570
malus_domestica	MD09G1035100.v1.1 MD13G1014900.v1.1 MD13G1196700.v1.1 MD17G1035400.v1.1
prunus_persica	Prupe.3G283200_v2.0.a1
pyrus_communis	pycom111g02800 pycom17g03260
rosa_chinensis	RchiOBHm_Chr2g0171091
rosa_laevigata	RLG00000022002
rosa_multiflora	Rmu_sc0004565.1_g000009 Rmu_sc0007623.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080820
rosa_rugosa	Rorug02G0553600
rosa_samantha	Rh2AG627200 Rh2BG637100 Rh2CG606100 Rh2DG648700 Rh2DG654300
rosa_wichuraiana	Rw2G051910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	106, 410
AatII	GACGTC	1 cut(s)	639
Acc36I	ACCTGC	2 cut(s)	106, 410
AccB7I	CCANNNNNTGG	1 cut(s)	685
AccBSI	CCGCTC	1 cut(s)	558
AccII	CGCG	1 cut(s)	270
AclWI	GGATC	2 cut(s)	174, 546
AcoI	YGGCCR	2 cut(s)	108, 183
AcvI	CACGTG	1 cut(s)	598
AcyI	GRCGYC	1 cut(s)	636
AfiI	CCNNNNNNNGG	5 cut(s)	35, 106, 685, 712, 803
AflIII	ACRYGT	1 cut(s)	51
AgsI	TTSAA	1 cut(s)	383
AjiI	CACGTC	1 cut(s)	526
AjnI	CCWGG	2 cut(s)	7, 469
AluBI	AGCT	8 cut(s)	34, 138, 181, 193, 262, 346, 386, 549
AluI	AGCT	8 cut(s)	34, 138, 181, 193, 262, 346, 386, 549
Alw21I	GWGCWC	1 cut(s)	551
Alw26I	GTCTC	2 cut(s)	137, 455
AlwI	GGATC	2 cut(s)	174, 546
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	4 cut(s)	10, 108, 183, 586
AspLEI	GCGC	3 cut(s)	99, 270, 563
AspS9I	GGNCC	3 cut(s)	587, 703, 831
AsuC2I	CCSGG	1 cut(s)	553
AsuHPI	GGTGA	5 cut(s)	83, 434, 485, 620, 668
AvaI	CYCGRG	1 cut(s)	62
AvaII	GGWCC	2 cut(s)	703, 831
BalI	TGGCCA	1 cut(s)	185
BanII	GRGCYC	2 cut(s)	244, 551
BbrPI	CACGTG	1 cut(s)	598
BbsI	GAAGAC	2 cut(s)	179, 257
Bbv12I	GWGCWC	1 cut(s)	551
BbvCI	CCTCAGC	2 cut(s)	30, 591
BccI	CCATC	4 cut(s)	692, 716, 725, 808
BceAI	ACGGC	2 cut(s)	123, 554
BciT130I	CCWGG	2 cut(s)	9, 471
BclI	TGATCA	4 cut(s)	73, 424, 486, 670
BcnI	CCSGG	1 cut(s)	553
BcoDI	GTCTC	2 cut(s)	137, 455
BfaI	CTAG	3 cut(s)	35, 194, 692
BfmI	CTRYAG	1 cut(s)	200
BfoI	RGCGCY	2 cut(s)	100, 564
BfuAI	ACCTGC	2 cut(s)	106, 410
Bme1390I	CCNGG	3 cut(s)	9, 471, 553
Bme18I	GGWCC	2 cut(s)	703, 831
BmeT110I	CYCGRG	1 cut(s)	62
BmgBI	CACGTC	1 cut(s)	526
BmgT120I	GGNCC	3 cut(s)	587, 703, 831
BmiI	GGNNCC	4 cut(s)	6, 162, 227, 704
BmrFI	CCNGG	3 cut(s)	9, 471, 553
BmsI	GCATC	1 cut(s)	130
BpiI	GAAGAC	2 cut(s)	179, 257
BpmI	CTGGAG	3 cut(s)	149, 179, 500
Bpu10I	CCTNAGC	3 cut(s)	30, 545, 591
BpuEI	CTTGAG	2 cut(s)	284, 314
BpuMI	CCSGG	1 cut(s)	553
BsaAI	YACGTR	1 cut(s)	598
BsaBI	GATNNNNATC	1 cut(s)	429
BsaHI	GRCGYC	1 cut(s)	636
BsaJI	CCNNGG	3 cut(s)	61, 354, 570
BsaXI	ACNNNNNCTCC	2 cut(s)	794, 824
Bsc4I	CCNNNNNNNGG	5 cut(s)	35, 106, 685, 712, 803
Bse1I	ACTGG	2 cut(s)	162, 517
Bse8I	GATNNNNATC	1 cut(s)	429
BseBI	CCWGG	2 cut(s)	9, 471
BseDI	CCNNGG	3 cut(s)	61, 354, 570
BseGI	GGATG	2 cut(s)	499, 658
BseJI	GATNNNNATC	1 cut(s)	429
BseLI	CCNNNNNNNGG	5 cut(s)	35, 106, 685, 712, 803
BseMII	CTCAG	4 cut(s)	44, 363, 536, 605
BseNI	ACTGG	2 cut(s)	162, 517
BseRI	GAGGAG	2 cut(s)	728, 815
BseX3I	CGGCCG	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	270
Bsh1285I	CGRYCG	2 cut(s)	111, 739
BshFI	GGCC	4 cut(s)	12, 110, 185, 588
BsiEI	CGRYCG	2 cut(s)	111, 739
BsiHKAI	GWGCWC	1 cut(s)	551
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	3 cut(s)	164, 552, 797
BslI	CCNNNNNNNGG	5 cut(s)	35, 106, 685, 712, 803
BsmAI	GTCTC	2 cut(s)	137, 455
BsmBI	CGTCTC	1 cut(s)	455
BsnI	GGCC	4 cut(s)	12, 110, 185, 588
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	244, 551
Bsp143I	GATC	7 cut(s)	73, 166, 391, 424, 486, 538, 670
BspANI	GGCC	4 cut(s)	12, 110, 185, 588
BspCNI	CTCAG	4 cut(s)	43, 364, 537, 604
BspFNI	CGCG	1 cut(s)	270
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	4 cut(s)	6, 162, 227, 704
BspMAI	CTGCAG	1 cut(s)	204
BspMI	ACCTGC	2 cut(s)	106, 410
BspPI	GGATC	2 cut(s)	174, 546
BsrBI	CCGCTC	1 cut(s)	558
BsrI	ACTGG	2 cut(s)	162, 517
BssECI	CCNNGG	3 cut(s)	61, 354, 570
BssMI	GATC	7 cut(s)	73, 166, 391, 424, 486, 538, 670
BssNI	GRCGYC	1 cut(s)	636
Bst2UI	CCWGG	2 cut(s)	9, 471
Bst6I	CTCTTC	1 cut(s)	657
BstACI	GRCGYC	1 cut(s)	636
BstBAI	YACGTR	1 cut(s)	598
BstC8I	GCNNGC	2 cut(s)	183, 244
BstDEI	CTNAG	4 cut(s)	30, 372, 545, 591
BstDSI	CCRYGG	1 cut(s)	570
BstENI	CCTNNNNNAGG	1 cut(s)	33
BstF5I	GGATG	2 cut(s)	499, 658
BstFNI	CGCG	1 cut(s)	270
BstH2I	RGCGCY	2 cut(s)	100, 564
BstHHI	GCGC	3 cut(s)	99, 270, 563
BstKTI	GATC	7 cut(s)	76, 169, 394, 427, 489, 541, 673
BstMAI	GTCTC	2 cut(s)	137, 455
BstMBI	GATC	7 cut(s)	73, 166, 391, 424, 486, 538, 670
BstMCI	CGRYCG	2 cut(s)	111, 739
BstMWI	GCNNNNNNNGC	7 cut(s)	199, 265, 555, 732, 776, 779, 793
BstNI	CCWGG	2 cut(s)	9, 471
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	3 cut(s)	7, 469, 551
BstSFI	CTRYAG	1 cut(s)	200
BstUI	CGCG	1 cut(s)	270
BstV2I	GAAGAC	2 cut(s)	179, 257
BstZI	CGGCCG	1 cut(s)	108
BsuRI	GGCC	4 cut(s)	12, 110, 185, 588
BtgI	CCRYGG	1 cut(s)	570
BtgZI	GCGATG	1 cut(s)	744
BtrI	CACGTC	1 cut(s)	526
BtsCI	GGATG	2 cut(s)	499, 658
BtsI	GCAGTG	1 cut(s)	679
BtsIMutI	CAGTG	1 cut(s)	679
BveI	ACCTGC	2 cut(s)	106, 410
Cac8I	GCNNGC	2 cut(s)	183, 244
CciI	TCATGA	1 cut(s)	436
CfoI	GCGC	3 cut(s)	99, 270, 563
Cfr13I	GGNCC	3 cut(s)	587, 703, 831
CseI	GACGC	2 cut(s)	184, 437
CspCI	CAANNNNNGTGG	2 cut(s)	195, 230
CviAII	CATG	4 cut(s)	52, 437, 668, 685
DdeI	CTNAG	4 cut(s)	30, 372, 545, 591
DpnI	GATC	7 cut(s)	75, 168, 393, 426, 488, 540, 672
DpnII	GATC	7 cut(s)	73, 166, 391, 424, 486, 538, 670
EaeI	YGGCCR	2 cut(s)	108, 183
EagI	CGGCCG	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
EciI	GGCGGA	1 cut(s)	556
Ecl136II	GAGCTC	1 cut(s)	549
EclXI	CGGCCG	1 cut(s)	108
Eco24I	GRGCYC	2 cut(s)	244, 551
Eco47I	GGWCC	2 cut(s)	703, 831
Eco52I	CGGCCG	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	549
Eco72I	CACGTG	1 cut(s)	598
Eco88I	CYCGRG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	549
EcoNI	CCTNNNNNAGG	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	587
EcoRII	CCWGG	2 cut(s)	7, 469
EcoT38I	GRGCYC	2 cut(s)	244, 551
Esp3I	CGTCTC	1 cut(s)	455
FaeI	CATG	4 cut(s)	55, 440, 671, 688
FaiI	YATR	8 cut(s)	53, 276, 297, 318, 368, 438, 669, 686
FatI	CATG	4 cut(s)	51, 436, 667, 684
FbaI	TGATCA	4 cut(s)	73, 424, 486, 670
FokI	GGATG	2 cut(s)	506, 645
FriOI	GRGCYC	2 cut(s)	244, 551
FspBI	CTAG	3 cut(s)	35, 194, 692
GlaI	GCGC	3 cut(s)	98, 269, 562
GsuI	CTGGAG	3 cut(s)	149, 179, 500
HaeII	RGCGCY	2 cut(s)	100, 564
HaeIII	GGCC	4 cut(s)	12, 110, 185, 588
HapII	CCGG	3 cut(s)	164, 552, 797
HgaI	GACGC	2 cut(s)	184, 437
HhaI	GCGC	3 cut(s)	99, 270, 563
Hin1I	GRCGYC	1 cut(s)	636
Hin1II	CATG	4 cut(s)	55, 440, 671, 688
Hin6I	GCGC	3 cut(s)	97, 268, 561
HinP1I	GCGC	3 cut(s)	97, 268, 561
HinfI	GANTC	5 cut(s)	232, 299, 320, 337, 611
HpaII	CCGG	3 cut(s)	164, 552, 797
HphI	GGTGA	5 cut(s)	83, 434, 485, 620, 668
Hpy166II	GTNNAC	4 cut(s)	577, 601, 640, 706
Hpy188I	TCNGA	8 cut(s)	86, 171, 342, 355, 634, 712, 741, 754
Hpy188III	TCNNGA	4 cut(s)	64, 229, 395, 437
Hpy8I	GTNNAC	4 cut(s)	577, 601, 640, 706
Hpy99I	CGWCG	1 cut(s)	527
HpyAV	CCTTC	2 cut(s)	523, 578
HpyCH4IV	ACGT	4 cut(s)	78, 525, 597, 636
HpyCH4V	TGCA	4 cut(s)	121, 202, 419, 684
HpyF10VI	GCNNNNNNNGC	7 cut(s)	199, 265, 555, 732, 776, 779, 793
HpyF3I	CTNAG	4 cut(s)	30, 372, 545, 591
HpySE526I	ACGT	4 cut(s)	78, 525, 597, 636
Hsp92I	GRCGYC	1 cut(s)	636
Hsp92II	CATG	4 cut(s)	55, 440, 671, 688
HspAI	GCGC	3 cut(s)	97, 268, 561
Ksp22I	TGATCA	4 cut(s)	73, 424, 486, 670
Kzo9I	GATC	7 cut(s)	73, 166, 391, 424, 486, 538, 670
LmnI	GCTCC	4 cut(s)	4, 160, 554, 555
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	3 cut(s)	35, 194, 692
MaeII	ACGT	4 cut(s)	78, 525, 597, 636
MaeIII	GTNAC	2 cut(s)	608, 743
MalI	GATC	7 cut(s)	75, 168, 393, 426, 488, 540, 672
MbiI	CCGCTC	1 cut(s)	558
MboI	GATC	7 cut(s)	73, 166, 391, 424, 486, 538, 670
MboII	GAAGA	6 cut(s)	103, 184, 262, 455, 458, 644
MhlI	GDGCHC	2 cut(s)	244, 551
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	1 cut(s)	643
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	2 cut(s)	293, 605
MmeI	TCCRAC	1 cut(s)	719
Mox20I	TGGCCA	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	185
MslI	CAYNNNNRTG	2 cut(s)	435, 438
Msp20I	TGGCCA	1 cut(s)	185
MspA1I	CMGCKG	3 cut(s)	181, 606, 773
MspI	CCGG	3 cut(s)	164, 552, 797
MspR9I	CCNGG	3 cut(s)	9, 471, 553
MvaI	CCWGG	2 cut(s)	9, 471
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	7 cut(s)	199, 265, 555, 732, 776, 779, 793
NciI	CCSGG	1 cut(s)	553
NdeII	GATC	7 cut(s)	73, 166, 391, 424, 486, 538, 670
NlaIII	CATG	4 cut(s)	55, 440, 671, 688
NlaIV	GGNNCC	4 cut(s)	6, 162, 227, 704
NmeAIII	GCCGAG	1 cut(s)	136
NmuCI	GTSAC	1 cut(s)	608
NspI	RCATGY	1 cut(s)	55
PagI	TCATGA	1 cut(s)	436
PaqCI	CACCTGC	2 cut(s)	106, 410
PciI	ACATGT	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	1 cut(s)	726
PfeI	GAWTC	3 cut(s)	232, 320, 337
PflMI	CCANNNNNTGG	1 cut(s)	685
PfoI	TCCNGGA	1 cut(s)	551
PleI	GAGTC	2 cut(s)	293, 605
PmaCI	CACGTG	1 cut(s)	598
PmlI	CACGTG	1 cut(s)	598
PpsI	GAGTC	2 cut(s)	293, 605
Ppu21I	YACGTR	1 cut(s)	598
PscI	ACATGT	1 cut(s)	51
Psp124BI	GAGCTC	1 cut(s)	551
Psp6I	CCWGG	2 cut(s)	7, 469
PspCI	CACGTG	1 cut(s)	598
PspGI	CCWGG	2 cut(s)	7, 469
PspN4I	GGNNCC	4 cut(s)	6, 162, 227, 704
PspPI	GGNCC	3 cut(s)	587, 703, 831
PstI	CTGCAG	1 cut(s)	204
PvuII	CAGCTG	1 cut(s)	181
RseI	CAYNNNNRTG	2 cut(s)	435, 438
SacI	GAGCTC	1 cut(s)	551
Sau3AI	GATC	7 cut(s)	73, 166, 391, 424, 486, 538, 670
Sau96I	GGNCC	3 cut(s)	587, 703, 831
SchI	GAGTC	2 cut(s)	293, 605
ScrFI	CCNGG	3 cut(s)	9, 471, 553
SduI	GDGCHC	2 cut(s)	244, 551
SfaNI	GCATC	1 cut(s)	130
SfcI	CTRYAG	1 cut(s)	200
SinI	GGWCC	2 cut(s)	703, 831
SmiMI	CAYNNNNRTG	2 cut(s)	435, 438
SmlI	CTYRAG	2 cut(s)	263, 329
SmoI	CTYRAG	2 cut(s)	263, 329
Sse9I	AATT	1 cut(s)	643
SspMI	CTAG	3 cut(s)	35, 194, 692
SstI	GAGCTC	1 cut(s)	551
StyD4I	CCNGG	3 cut(s)	7, 469, 551
TaiI	ACGT	4 cut(s)	81, 528, 600, 639
TaqI	TCGA	2 cut(s)	522, 812
TasI	AATT	1 cut(s)	643
TauI	GCSGC	6 cut(s)	45, 48, 102, 561, 773, 779
TfiI	GAWTC	3 cut(s)	232, 320, 337
TscAI	CASTG	1 cut(s)	686
TseFI	GTSAC	1 cut(s)	608
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	1 cut(s)	449
TspGWI	ACGGA	1 cut(s)	506
TspRI	CASTG	1 cut(s)	686
Van91I	CCANNNNNTGG	1 cut(s)	685
VpaK11BI	GGWCC	2 cut(s)	703, 831
XagI	CCTNNNNNAGG	1 cut(s)	33
XceI	RCATGY	1 cut(s)	55
XspI	CTAG	3 cut(s)	35, 194, 692
ZraI	GACGTC	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.