MD17G1035400.v1.1

Homeobox-leucine zipper protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
2533728 .. 2537543
3816 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1035400.v1.1.491

Sequence Viewer

Length: 999 bp
ATGATGGAGCCGGGCCGTCTTTTCTTTGAGCCTTCGCCGTCTGTTTGCCAGCAAGGTGGTGGTGGCAACATGTTGTTCCTCGGGAATCCTGATCACGTTTTTCGAGGGCCAAGATCCATGATGGGTTTGATAGATCAGGAGAGCTCGAGGAGGCGACCTTTTTTCAGCTCCTCCTCGTCGCAGGACGAACTGTTCGACGAGGAATACTACGACGAGCAGCTGCCGGAGAAGAAGCGCCGCCTCACTCCTGACCAGGTACATATGCTGGAGAAGAGCTTTGAGACAGAGAACAAGCTGGAGCCGGAGCGAAAGACGCAGCTGGCCAAGAAGCTAGGCCTGCAGCCGAGACAGGTGGCCGTCTGGTTCCAGAACCGCCGCGCTCGGTGGAAGACCAAGCAGCTCGAGCGGGACTACGACCTTCTCAAATCTTCTTATGACACCCTTTTGTCTAATTACGACTCCATCCTCAAGGAGAATCAGAAACTCAAATCCCAGGTGGTTTCCATAAACGAGAAGCTTGGAGGTAAAGAGGAGGCTAATAGCACAAAAGCAGCAACATTTGCAGGGGCTGACCACGATGACGAGAAGCGTGGCCCTCTTCTTCCAGCGGGCGATCAGATGACGGAGGTTGTTCCAATAACTAGTCTCCAGCACAGTTGCACCATCAAGGCGGAGGACCGCCTGAGCTCAGGGAGCGGAGGAAGTGCCGTGGTGGACGAGGCCGAAGGCGCTCAGCCTGTGGACAGCGGTGACTCCTATAATTTCCCAAACAACATCCATAACGACTACCCTCATGATCATGATACCCATCATCATCATCATCAATATGTGGCGCCACATGATCATGTAGAACATCATCACAGCGGAGTCCACTCAGAAGAAGATGATGGTAGCGATGACGGCCAGGGTTACTTCTCCGATGTCTTTGCAGTCGCAGCGGCGGAGCAGCAAGCAGCACAGGAGGAGGGTGTTTCTTTGGGGTGGTGGGTGTGGTCCTAG

Protein Analysis

333

Amino Acids

37.43

Weight (kDa)

5.18

Isoelectric Point (pI)

57.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 77 - 130 1.6e-18 Homeodomain
HALZ PF02183 132 - 173 4.7e-17 Homeobox associated leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 832
AccBSI CCGCTC 2 cut(s) 406, 696
AccII CGCG 1 cut(s) 378
AclWI GGATC 1 cut(s) 108
AcoI YGGCCR 3 cut(s) 321, 354, 901
AcyI GRCGYC 1 cut(s) 833
AfaI GTAC 1 cut(s) 258
AflIII ACRYGT 1 cut(s) 69
AhlI ACTAGT 1 cut(s) 641
AjnI CCWGG 3 cut(s) 252, 492, 903
AloI GAACNNNNNNTCC 2 cut(s) 176, 208
Alw21I GWGCWC 2 cut(s) 146, 689
Alw26I GTCTC 3 cut(s) 275, 340, 650
AlwI GGATC 1 cut(s) 108
AlwNI CAGNNNCTG 1 cut(s) 569
Ama87I CYCGRG 3 cut(s) 80, 145, 401
AoxI GGCC 8 cut(s) 13, 107, 321, 334, 354, 592, 720, 901
ApeKI GCWGC 9 cut(s) 217, 220, 316, 340, 397, 551, 935, 946, 953
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
AspLEI GCGC 4 cut(s) 237, 380, 731, 835
AspS9I GGNCC 5 cut(s) 13, 107, 593, 676, 993
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 761
AvaI CYCGRG 3 cut(s) 80, 145, 401
AvaII GGWCC 2 cut(s) 676, 993
BalI TGGCCA 1 cut(s) 323
BanI GGYRCC 1 cut(s) 832
BanII GRGCYC 2 cut(s) 146, 689
BbsI GAAGAC 1 cut(s) 395
Bbv12I GWGCWC 2 cut(s) 146, 689
BbvI GCAGC 9 cut(s) 207, 229, 328, 352, 409, 563, 947, 958, 965
BccI CCATC 5 cut(s) 115, 470, 671, 816, 881
BceAI ACGGC 4 cut(s) 22, 341, 692, 916
BcgI CGANNNNNNTGC 2 cut(s) 908, 942
BciT130I CCWGG 3 cut(s) 254, 494, 905
BclI TGATCA 3 cut(s) 91, 796, 841
BcnI CCSGG 1 cut(s) 12
BcoDI GTCTC 3 cut(s) 275, 340, 650
BcuI ACTAGT 1 cut(s) 641
BfaI CTAG 3 cut(s) 332, 642, 997
BfmI CTRYAG 1 cut(s) 338
BfoI RGCGCY 3 cut(s) 238, 732, 836
BlpI GCTNAGC 1 cut(s) 732
Bme1390I CCNGG 4 cut(s) 12, 254, 494, 905
Bme18I GGWCC 2 cut(s) 676, 993
BmeT110I CYCGRG 3 cut(s) 80, 145, 401
BmgT120I GGNCC 5 cut(s) 13, 107, 593, 676, 993
BmiI GGNNCC 4 cut(s) 9, 300, 365, 834
BmrFI CCNGG 4 cut(s) 12, 254, 494, 905
BpiI GAAGAC 1 cut(s) 395
BpmI CTGGAG 3 cut(s) 287, 317, 632
Bpu10I CCTNAGC 2 cut(s) 683, 688
Bpu1102I GCTNAGC 1 cut(s) 732
BpuEI CTTGAG 1 cut(s) 452
BpuMI CCSGG 1 cut(s) 12
BsaBI GATNNNNATC 1 cut(s) 807
BsaHI GRCGYC 1 cut(s) 833
BsaJI CCNNGG 4 cut(s) 79, 492, 708, 904
Bse8I GATNNNNATC 1 cut(s) 807
BseBI CCWGG 3 cut(s) 254, 494, 905
BseDI CCNNGG 4 cut(s) 79, 492, 708, 904
BseGI GGATG 2 cut(s) 462, 774
BseJI GATNNNNATC 1 cut(s) 807
BseMII CTCAG 4 cut(s) 674, 702, 746, 888
BseRI GAGGAG 5 cut(s) 160, 163, 163, 545, 977
BseXI GCAGC 9 cut(s) 207, 229, 328, 352, 409, 563, 947, 958, 965
Bsh1236I CGCG 1 cut(s) 378
BshFI GGCC 8 cut(s) 15, 109, 323, 336, 356, 594, 722, 903
BshNI GGYRCC 1 cut(s) 832
BsiHKAI GWGCWC 2 cut(s) 146, 689
BsiHKCI CYCGRG 3 cut(s) 80, 145, 401
BsiSI CCGG 3 cut(s) 11, 224, 302
BslFI GGGAC 1 cut(s) 422
BsmAI GTCTC 3 cut(s) 275, 340, 650
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 8 cut(s) 15, 109, 323, 336, 356, 594, 722, 903
BsoBI CYCGRG 3 cut(s) 80, 145, 401
Bsp1286I GDGCHC 2 cut(s) 146, 689
Bsp143I GATC 6 cut(s) 91, 113, 133, 613, 796, 841
Bsp1720I GCTNAGC 1 cut(s) 732
BspANI GGCC 8 cut(s) 15, 109, 323, 336, 356, 594, 722, 903
BspCNI CTCAG 4 cut(s) 675, 701, 745, 887
BspFNI CGCG 1 cut(s) 378
BspHI TCATGA 2 cut(s) 793, 799
BspLI GGNNCC 4 cut(s) 9, 300, 365, 834
BspMAI CTGCAG 1 cut(s) 342
BspPI GGATC 1 cut(s) 108
BspQI GCTCTTC 1 cut(s) 266
BspT107I GGYRCC 1 cut(s) 832
BsrBI CCGCTC 2 cut(s) 406, 696
BssECI CCNNGG 4 cut(s) 79, 492, 708, 904
BssMI GATC 6 cut(s) 91, 113, 133, 613, 796, 841
BssNI GRCGYC 1 cut(s) 833
Bst2UI CCWGG 3 cut(s) 254, 494, 905
Bst4CI ACNGT 2 cut(s) 192, 656
Bst6I CTCTTC 2 cut(s) 266, 603
BstACI GRCGYC 1 cut(s) 833
BstAPI GCANNNNNTGC 1 cut(s) 560
BstC8I GCNNGC 5 cut(s) 50, 321, 338, 610, 951
BstDEI CTNAG 4 cut(s) 683, 688, 732, 874
BstDSI CCRYGG 1 cut(s) 708
BstF5I GGATG 2 cut(s) 462, 774
BstFNI CGCG 1 cut(s) 378
BstH2I RGCGCY 3 cut(s) 238, 732, 836
BstHHI GCGC 4 cut(s) 237, 380, 731, 835
BstKTI GATC 6 cut(s) 94, 116, 136, 616, 799, 844
BstMAI GTCTC 3 cut(s) 275, 340, 650
BstMBI GATC 6 cut(s) 91, 113, 133, 613, 796, 841
BstMWI GCNNNNNNNGC 8 cut(s) 313, 337, 403, 560, 693, 728, 900, 935
BstNI CCWGG 3 cut(s) 254, 494, 905
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 4 cut(s) 10, 252, 492, 903
BstSFI CTRYAG 1 cut(s) 338
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 9 cut(s) 207, 229, 328, 352, 409, 563, 947, 958, 965
BstV2I GAAGAC 1 cut(s) 395
BstX2I RGATCY 1 cut(s) 113
BstXI CCANNNNNNTGG 1 cut(s) 56
BstYI RGATCY 1 cut(s) 113
BsuRI GGCC 8 cut(s) 15, 109, 323, 336, 356, 594, 722, 903
BtgI CCRYGG 1 cut(s) 708
BtgZI GCGATG 1 cut(s) 909
BtsCI GGATG 2 cut(s) 462, 774
Cac8I GCNNGC 5 cut(s) 50, 321, 338, 610, 951
CaiI CAGNNNCTG 1 cut(s) 569
CciI TCATGA 2 cut(s) 793, 799
CfoI GCGC 4 cut(s) 237, 380, 731, 835
Cfr13I GGNCC 5 cut(s) 13, 107, 593, 676, 993
CseI GACGC 1 cut(s) 322
CsiI ACCWGGT 1 cut(s) 252
Csp6I GTAC 1 cut(s) 257
CviAII CATG 6 cut(s) 70, 118, 794, 800, 839, 845
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 4 cut(s) 683, 688, 732, 874
DinI GGCGCC 1 cut(s) 834
DpnI GATC 6 cut(s) 93, 115, 135, 615, 798, 843
DpnII GATC 6 cut(s) 91, 113, 133, 613, 796, 841
EaeI YGGCCR 3 cut(s) 321, 354, 901
Eam1104I CTCTTC 2 cut(s) 266, 603
EarI CTCTTC 2 cut(s) 266, 603
EciI GGCGGA 2 cut(s) 686, 956
Ecl136II GAGCTC 2 cut(s) 144, 687
Eco147I AGGCCT 1 cut(s) 336
Eco24I GRGCYC 2 cut(s) 146, 689
Eco47I GGWCC 2 cut(s) 676, 993
Eco53kI GAGCTC 2 cut(s) 144, 687
Eco88I CYCGRG 3 cut(s) 80, 145, 401
EcoICRI GAGCTC 2 cut(s) 144, 687
EcoRII CCWGG 3 cut(s) 252, 492, 903
EcoT38I GRGCYC 2 cut(s) 146, 689
EgeI GGCGCC 1 cut(s) 834
EheI GGCGCC 1 cut(s) 834
FaeI CATG 6 cut(s) 73, 121, 797, 803, 842, 848
FaqI GGGAC 1 cut(s) 422
FatI CATG 6 cut(s) 69, 117, 793, 799, 838, 844
FauI CCCGC 2 cut(s) 399, 601
FauNDI CATATG 1 cut(s) 261
FbaI TGATCA 3 cut(s) 91, 796, 841
FokI GGATG 2 cut(s) 449, 761
FriOI GRGCYC 2 cut(s) 146, 689
FspBI CTAG 3 cut(s) 332, 642, 997
GlaI GCGC 4 cut(s) 236, 379, 730, 834
GsuI CTGGAG 3 cut(s) 287, 317, 632
HaeII RGCGCY 3 cut(s) 238, 732, 836
HaeIII GGCC 8 cut(s) 15, 109, 323, 336, 356, 594, 722, 903
HapII CCGG 3 cut(s) 11, 224, 302
HgaI GACGC 1 cut(s) 322
HhaI GCGC 4 cut(s) 237, 380, 731, 835
Hin1I GRCGYC 1 cut(s) 833
Hin1II CATG 6 cut(s) 73, 121, 797, 803, 842, 848
Hin6I GCGC 4 cut(s) 235, 378, 729, 833
HinP1I GCGC 4 cut(s) 235, 378, 729, 833
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 5 cut(s) 85, 458, 475, 752, 867
HpaII CCGG 3 cut(s) 11, 224, 302
HphI GGTGA 1 cut(s) 761
Hpy166II GTNNAC 3 cut(s) 715, 742, 871
Hpy188I TCNGA 4 cut(s) 480, 618, 877, 919
Hpy188III TCNNGA 7 cut(s) 82, 89, 137, 248, 367, 794, 800
Hpy8I GTNNAC 3 cut(s) 715, 742, 871
Hpy99I CGWCG 3 cut(s) 181, 200, 215
HpyAV CCTTC 3 cut(s) 42, 428, 719
HpyCH4III ACNGT 2 cut(s) 192, 656
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 4 cut(s) 340, 563, 660, 929
HpyF10VI GCNNNNNNNGC 8 cut(s) 313, 337, 403, 560, 693, 728, 900, 935
HpyF3I CTNAG 4 cut(s) 683, 688, 732, 874
HpySE526I ACGT 1 cut(s) 96
Hsp92I GRCGYC 1 cut(s) 833
Hsp92II CATG 6 cut(s) 73, 121, 797, 803, 842, 848
HspAI GCGC 4 cut(s) 235, 378, 729, 833
KasI GGCGCC 1 cut(s) 832
Ksp22I TGATCA 3 cut(s) 91, 796, 841
Kzo9I GATC 6 cut(s) 91, 113, 133, 613, 796, 841
LguI GCTCTTC 1 cut(s) 266
LmnI GCTCC 6 cut(s) 7, 173, 298, 304, 693, 943
Lsp1109I GCAGC 9 cut(s) 207, 229, 328, 352, 409, 563, 947, 958, 965
MabI ACCWGGT 1 cut(s) 252
MaeI CTAG 3 cut(s) 332, 642, 997
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 749, 908
MalI GATC 6 cut(s) 93, 115, 135, 615, 798, 843
MbiI CCGCTC 2 cut(s) 406, 696
MboI GATC 6 cut(s) 91, 113, 133, 613, 796, 841
MboII GAAGA 8 cut(s) 241, 283, 400, 420, 590, 593, 890, 893
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 2 cut(s) 146, 689
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 2 cut(s) 451, 760
MluNI TGGCCA 1 cut(s) 323
Mly113I GGCGCC 1 cut(s) 833
MlyI GAGTC 3 cut(s) 452, 746, 876
Mox20I TGGCCA 1 cut(s) 323
MscI TGGCCA 1 cut(s) 323
MslI CAYNNNNRTG 3 cut(s) 798, 825, 843
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 6 cut(s) 220, 319, 608, 747, 864, 938
MspI CCGG 3 cut(s) 11, 224, 302
MspR9I CCNGG 4 cut(s) 12, 254, 494, 905
MvaI CCWGG 3 cut(s) 254, 494, 905
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 8 cut(s) 313, 337, 403, 560, 693, 728, 900, 935
NarI GGCGCC 1 cut(s) 833
NciI CCSGG 1 cut(s) 12
NdeI CATATG 1 cut(s) 261
NdeII GATC 6 cut(s) 91, 113, 133, 613, 796, 841
NlaIII CATG 6 cut(s) 73, 121, 797, 803, 842, 848
NlaIV GGNNCC 4 cut(s) 9, 300, 365, 834
NmeAIII GCCGAG 1 cut(s) 369
NmuCI GTSAC 1 cut(s) 749
NspI RCATGY 1 cut(s) 73
PaeR7I CTCGAG 2 cut(s) 145, 401
PagI TCATGA 2 cut(s) 793, 799
PceI AGGCCT 1 cut(s) 336
PciI ACATGT 1 cut(s) 69
PciSI GCTCTTC 1 cut(s) 266
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PfeI GAWTC 2 cut(s) 85, 475
PleI GAGTC 3 cut(s) 452, 746, 875
PluTI GGCGCC 1 cut(s) 836
PpsI GAGTC 3 cut(s) 452, 746, 875
PscI ACATGT 1 cut(s) 69
Psp124BI GAGCTC 2 cut(s) 146, 689
Psp6I CCWGG 3 cut(s) 252, 492, 903
PspGI CCWGG 3 cut(s) 252, 492, 903
PspN4I GGNNCC 4 cut(s) 9, 300, 365, 834
PspPI GGNCC 5 cut(s) 13, 107, 593, 676, 993
PspXI VCTCGAGB 2 cut(s) 145, 401
PstI CTGCAG 1 cut(s) 342
PstNI CAGNNNCTG 1 cut(s) 569
PsuI RGATCY 1 cut(s) 113
PvuII CAGCTG 2 cut(s) 220, 319
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
RseI CAYNNNNRTG 3 cut(s) 798, 825, 843
SacI GAGCTC 2 cut(s) 146, 689
SapI GCTCTTC 1 cut(s) 266
Sau3AI GATC 6 cut(s) 91, 113, 133, 613, 796, 841
Sau96I GGNCC 5 cut(s) 13, 107, 593, 676, 993
SchI GAGTC 3 cut(s) 452, 746, 876
ScrFI CCNGG 4 cut(s) 12, 254, 494, 905
SduI GDGCHC 2 cut(s) 146, 689
SexAI ACCWGGT 1 cut(s) 252
SfcI CTRYAG 1 cut(s) 338
SfoI GGCGCC 1 cut(s) 834
Sfr274I CTCGAG 2 cut(s) 145, 401
SinI GGWCC 2 cut(s) 676, 993
SlaI CTCGAG 2 cut(s) 145, 401
SmiMI CAYNNNNRTG 3 cut(s) 798, 825, 843
SmlI CTYRAG 3 cut(s) 145, 401, 467
SmoI CTYRAG 3 cut(s) 145, 401, 467
SpeI ACTAGT 1 cut(s) 641
Sse9I AATT 2 cut(s) 451, 760
SseBI AGGCCT 1 cut(s) 336
SspDI GGCGCC 1 cut(s) 832
SspMI CTAG 3 cut(s) 332, 642, 997
SstI GAGCTC 2 cut(s) 146, 689
StuI AGGCCT 1 cut(s) 336
StyD4I CCNGG 4 cut(s) 10, 252, 492, 903
TaaI ACNGT 2 cut(s) 192, 656
TaiI ACGT 1 cut(s) 99
TaqI TCGA 4 cut(s) 103, 146, 195, 402
TasI AATT 2 cut(s) 451, 760
TauI GCSGC 3 cut(s) 240, 378, 941
TfiI GAWTC 2 cut(s) 85, 475
TseFI GTSAC 1 cut(s) 749
TseI GCWGC 9 cut(s) 217, 220, 316, 340, 397, 551, 935, 946, 953
Tsp45I GTSAC 1 cut(s) 749
TspGWI ACGGA 1 cut(s) 638
VpaK11BI GGWCC 2 cut(s) 676, 993
XceI RCATGY 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 1 cut(s) 56
XhoI CTCGAG 2 cut(s) 145, 401
XspI CTAG 3 cut(s) 332, 642, 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.