Homeobox-leucine zipper protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G20280 AT1G61200 AT3G01470 |
| fragaria_vesca | FvH4_6g50570 |
| malus_domestica | MD09G1035100.v1.1 MD13G1014900.v1.1 MD13G1196700.v1.1 MD17G1035400.v1.1 |
| prunus_persica | Prupe.3G283200_v2.0.a1 |
| pyrus_communis | pycom111g02800 pycom17g03260 |
| rosa_chinensis | RchiOBHm_Chr2g0171091 |
| rosa_laevigata | RLG00000022002 |
| rosa_multiflora | Rmu_sc0004565.1_g000009 Rmu_sc0007623.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00080820 |
| rosa_rugosa | Rorug02G0553600 |
| rosa_samantha | Rh2AG627200 Rh2BG637100 Rh2CG606100 Rh2DG648700 Rh2DG654300 |
| rosa_wichuraiana | Rw2G051910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 832 |
| AccBSI | CCGCTC | 2 cut(s) | 406, 696 |
| AccII | CGCG | 1 cut(s) | 378 |
| AclWI | GGATC | 1 cut(s) | 108 |
| AcoI | YGGCCR | 3 cut(s) | 321, 354, 901 |
| AcyI | GRCGYC | 1 cut(s) | 833 |
| AfaI | GTAC | 1 cut(s) | 258 |
| AflIII | ACRYGT | 1 cut(s) | 69 |
| AhlI | ACTAGT | 1 cut(s) | 641 |
| AjnI | CCWGG | 3 cut(s) | 252, 492, 903 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 176, 208 |
| Alw21I | GWGCWC | 2 cut(s) | 146, 689 |
| Alw26I | GTCTC | 3 cut(s) | 275, 340, 650 |
| AlwI | GGATC | 1 cut(s) | 108 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 569 |
| Ama87I | CYCGRG | 3 cut(s) | 80, 145, 401 |
| AoxI | GGCC | 8 cut(s) | 13, 107, 321, 334, 354, 592, 720, 901 |
| ApeKI | GCWGC | 9 cut(s) | 217, 220, 316, 340, 397, 551, 935, 946, 953 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 176, 208 |
| AspLEI | GCGC | 4 cut(s) | 237, 380, 731, 835 |
| AspS9I | GGNCC | 5 cut(s) | 13, 107, 593, 676, 993 |
| AsuC2I | CCSGG | 1 cut(s) | 12 |
| AsuHPI | GGTGA | 1 cut(s) | 761 |
| AvaI | CYCGRG | 3 cut(s) | 80, 145, 401 |
| AvaII | GGWCC | 2 cut(s) | 676, 993 |
| BalI | TGGCCA | 1 cut(s) | 323 |
| BanI | GGYRCC | 1 cut(s) | 832 |
| BanII | GRGCYC | 2 cut(s) | 146, 689 |
| BbsI | GAAGAC | 1 cut(s) | 395 |
| Bbv12I | GWGCWC | 2 cut(s) | 146, 689 |
| BbvI | GCAGC | 9 cut(s) | 207, 229, 328, 352, 409, 563, 947, 958, 965 |
| BccI | CCATC | 5 cut(s) | 115, 470, 671, 816, 881 |
| BceAI | ACGGC | 4 cut(s) | 22, 341, 692, 916 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 908, 942 |
| BciT130I | CCWGG | 3 cut(s) | 254, 494, 905 |
| BclI | TGATCA | 3 cut(s) | 91, 796, 841 |
| BcnI | CCSGG | 1 cut(s) | 12 |
| BcoDI | GTCTC | 3 cut(s) | 275, 340, 650 |
| BcuI | ACTAGT | 1 cut(s) | 641 |
| BfaI | CTAG | 3 cut(s) | 332, 642, 997 |
| BfmI | CTRYAG | 1 cut(s) | 338 |
| BfoI | RGCGCY | 3 cut(s) | 238, 732, 836 |
| BlpI | GCTNAGC | 1 cut(s) | 732 |
| Bme1390I | CCNGG | 4 cut(s) | 12, 254, 494, 905 |
| Bme18I | GGWCC | 2 cut(s) | 676, 993 |
| BmeT110I | CYCGRG | 3 cut(s) | 80, 145, 401 |
| BmgT120I | GGNCC | 5 cut(s) | 13, 107, 593, 676, 993 |
| BmiI | GGNNCC | 4 cut(s) | 9, 300, 365, 834 |
| BmrFI | CCNGG | 4 cut(s) | 12, 254, 494, 905 |
| BpiI | GAAGAC | 1 cut(s) | 395 |
| BpmI | CTGGAG | 3 cut(s) | 287, 317, 632 |
| Bpu10I | CCTNAGC | 2 cut(s) | 683, 688 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 732 |
| BpuEI | CTTGAG | 1 cut(s) | 452 |
| BpuMI | CCSGG | 1 cut(s) | 12 |
| BsaBI | GATNNNNATC | 1 cut(s) | 807 |
| BsaHI | GRCGYC | 1 cut(s) | 833 |
| BsaJI | CCNNGG | 4 cut(s) | 79, 492, 708, 904 |
| Bse8I | GATNNNNATC | 1 cut(s) | 807 |
| BseBI | CCWGG | 3 cut(s) | 254, 494, 905 |
| BseDI | CCNNGG | 4 cut(s) | 79, 492, 708, 904 |
| BseGI | GGATG | 2 cut(s) | 462, 774 |
| BseJI | GATNNNNATC | 1 cut(s) | 807 |
| BseMII | CTCAG | 4 cut(s) | 674, 702, 746, 888 |
| BseRI | GAGGAG | 5 cut(s) | 160, 163, 163, 545, 977 |
| BseXI | GCAGC | 9 cut(s) | 207, 229, 328, 352, 409, 563, 947, 958, 965 |
| Bsh1236I | CGCG | 1 cut(s) | 378 |
| BshFI | GGCC | 8 cut(s) | 15, 109, 323, 336, 356, 594, 722, 903 |
| BshNI | GGYRCC | 1 cut(s) | 832 |
| BsiHKAI | GWGCWC | 2 cut(s) | 146, 689 |
| BsiHKCI | CYCGRG | 3 cut(s) | 80, 145, 401 |
| BsiSI | CCGG | 3 cut(s) | 11, 224, 302 |
| BslFI | GGGAC | 1 cut(s) | 422 |
| BsmAI | GTCTC | 3 cut(s) | 275, 340, 650 |
| BsmFI | GGGAC | 1 cut(s) | 422 |
| BsnI | GGCC | 8 cut(s) | 15, 109, 323, 336, 356, 594, 722, 903 |
| BsoBI | CYCGRG | 3 cut(s) | 80, 145, 401 |
| Bsp1286I | GDGCHC | 2 cut(s) | 146, 689 |
| Bsp143I | GATC | 6 cut(s) | 91, 113, 133, 613, 796, 841 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 732 |
| BspANI | GGCC | 8 cut(s) | 15, 109, 323, 336, 356, 594, 722, 903 |
| BspCNI | CTCAG | 4 cut(s) | 675, 701, 745, 887 |
| BspFNI | CGCG | 1 cut(s) | 378 |
| BspHI | TCATGA | 2 cut(s) | 793, 799 |
| BspLI | GGNNCC | 4 cut(s) | 9, 300, 365, 834 |
| BspMAI | CTGCAG | 1 cut(s) | 342 |
| BspPI | GGATC | 1 cut(s) | 108 |
| BspQI | GCTCTTC | 1 cut(s) | 266 |
| BspT107I | GGYRCC | 1 cut(s) | 832 |
| BsrBI | CCGCTC | 2 cut(s) | 406, 696 |
| BssECI | CCNNGG | 4 cut(s) | 79, 492, 708, 904 |
| BssMI | GATC | 6 cut(s) | 91, 113, 133, 613, 796, 841 |
| BssNI | GRCGYC | 1 cut(s) | 833 |
| Bst2UI | CCWGG | 3 cut(s) | 254, 494, 905 |
| Bst4CI | ACNGT | 2 cut(s) | 192, 656 |
| Bst6I | CTCTTC | 2 cut(s) | 266, 603 |
| BstACI | GRCGYC | 1 cut(s) | 833 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 560 |
| BstC8I | GCNNGC | 5 cut(s) | 50, 321, 338, 610, 951 |
| BstDEI | CTNAG | 4 cut(s) | 683, 688, 732, 874 |
| BstDSI | CCRYGG | 1 cut(s) | 708 |
| BstF5I | GGATG | 2 cut(s) | 462, 774 |
| BstFNI | CGCG | 1 cut(s) | 378 |
| BstH2I | RGCGCY | 3 cut(s) | 238, 732, 836 |
| BstHHI | GCGC | 4 cut(s) | 237, 380, 731, 835 |
| BstKTI | GATC | 6 cut(s) | 94, 116, 136, 616, 799, 844 |
| BstMAI | GTCTC | 3 cut(s) | 275, 340, 650 |
| BstMBI | GATC | 6 cut(s) | 91, 113, 133, 613, 796, 841 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 313, 337, 403, 560, 693, 728, 900, 935 |
| BstNI | CCWGG | 3 cut(s) | 254, 494, 905 |
| BstNSI | RCATGY | 1 cut(s) | 73 |
| BstSCI | CCNGG | 4 cut(s) | 10, 252, 492, 903 |
| BstSFI | CTRYAG | 1 cut(s) | 338 |
| BstUI | CGCG | 1 cut(s) | 378 |
| BstV1I | GCAGC | 9 cut(s) | 207, 229, 328, 352, 409, 563, 947, 958, 965 |
| BstV2I | GAAGAC | 1 cut(s) | 395 |
| BstX2I | RGATCY | 1 cut(s) | 113 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 56 |
| BstYI | RGATCY | 1 cut(s) | 113 |
| BsuRI | GGCC | 8 cut(s) | 15, 109, 323, 336, 356, 594, 722, 903 |
| BtgI | CCRYGG | 1 cut(s) | 708 |
| BtgZI | GCGATG | 1 cut(s) | 909 |
| BtsCI | GGATG | 2 cut(s) | 462, 774 |
| Cac8I | GCNNGC | 5 cut(s) | 50, 321, 338, 610, 951 |
| CaiI | CAGNNNCTG | 1 cut(s) | 569 |
| CciI | TCATGA | 2 cut(s) | 793, 799 |
| CfoI | GCGC | 4 cut(s) | 237, 380, 731, 835 |
| Cfr13I | GGNCC | 5 cut(s) | 13, 107, 593, 676, 993 |
| CseI | GACGC | 1 cut(s) | 322 |
| CsiI | ACCWGGT | 1 cut(s) | 252 |
| Csp6I | GTAC | 1 cut(s) | 257 |
| CviAII | CATG | 6 cut(s) | 70, 118, 794, 800, 839, 845 |
| CviQI | GTAC | 1 cut(s) | 257 |
| DdeI | CTNAG | 4 cut(s) | 683, 688, 732, 874 |
| DinI | GGCGCC | 1 cut(s) | 834 |
| DpnI | GATC | 6 cut(s) | 93, 115, 135, 615, 798, 843 |
| DpnII | GATC | 6 cut(s) | 91, 113, 133, 613, 796, 841 |
| EaeI | YGGCCR | 3 cut(s) | 321, 354, 901 |
| Eam1104I | CTCTTC | 2 cut(s) | 266, 603 |
| EarI | CTCTTC | 2 cut(s) | 266, 603 |
| EciI | GGCGGA | 2 cut(s) | 686, 956 |
| Ecl136II | GAGCTC | 2 cut(s) | 144, 687 |
| Eco147I | AGGCCT | 1 cut(s) | 336 |
| Eco24I | GRGCYC | 2 cut(s) | 146, 689 |
| Eco47I | GGWCC | 2 cut(s) | 676, 993 |
| Eco53kI | GAGCTC | 2 cut(s) | 144, 687 |
| Eco88I | CYCGRG | 3 cut(s) | 80, 145, 401 |
| EcoICRI | GAGCTC | 2 cut(s) | 144, 687 |
| EcoRII | CCWGG | 3 cut(s) | 252, 492, 903 |
| EcoT38I | GRGCYC | 2 cut(s) | 146, 689 |
| EgeI | GGCGCC | 1 cut(s) | 834 |
| EheI | GGCGCC | 1 cut(s) | 834 |
| FaeI | CATG | 6 cut(s) | 73, 121, 797, 803, 842, 848 |
| FaqI | GGGAC | 1 cut(s) | 422 |
| FatI | CATG | 6 cut(s) | 69, 117, 793, 799, 838, 844 |
| FauI | CCCGC | 2 cut(s) | 399, 601 |
| FauNDI | CATATG | 1 cut(s) | 261 |
| FbaI | TGATCA | 3 cut(s) | 91, 796, 841 |
| FokI | GGATG | 2 cut(s) | 449, 761 |
| FriOI | GRGCYC | 2 cut(s) | 146, 689 |
| FspBI | CTAG | 3 cut(s) | 332, 642, 997 |
| GlaI | GCGC | 4 cut(s) | 236, 379, 730, 834 |
| GsuI | CTGGAG | 3 cut(s) | 287, 317, 632 |
| HaeII | RGCGCY | 3 cut(s) | 238, 732, 836 |
| HaeIII | GGCC | 8 cut(s) | 15, 109, 323, 336, 356, 594, 722, 903 |
| HapII | CCGG | 3 cut(s) | 11, 224, 302 |
| HgaI | GACGC | 1 cut(s) | 322 |
| HhaI | GCGC | 4 cut(s) | 237, 380, 731, 835 |
| Hin1I | GRCGYC | 1 cut(s) | 833 |
| Hin1II | CATG | 6 cut(s) | 73, 121, 797, 803, 842, 848 |
| Hin6I | GCGC | 4 cut(s) | 235, 378, 729, 833 |
| HinP1I | GCGC | 4 cut(s) | 235, 378, 729, 833 |
| HindIII | AAGCTT | 1 cut(s) | 515 |
| HinfI | GANTC | 5 cut(s) | 85, 458, 475, 752, 867 |
| HpaII | CCGG | 3 cut(s) | 11, 224, 302 |
| HphI | GGTGA | 1 cut(s) | 761 |
| Hpy166II | GTNNAC | 3 cut(s) | 715, 742, 871 |
| Hpy188I | TCNGA | 4 cut(s) | 480, 618, 877, 919 |
| Hpy188III | TCNNGA | 7 cut(s) | 82, 89, 137, 248, 367, 794, 800 |
| Hpy8I | GTNNAC | 3 cut(s) | 715, 742, 871 |
| Hpy99I | CGWCG | 3 cut(s) | 181, 200, 215 |
| HpyAV | CCTTC | 3 cut(s) | 42, 428, 719 |
| HpyCH4III | ACNGT | 2 cut(s) | 192, 656 |
| HpyCH4IV | ACGT | 1 cut(s) | 96 |
| HpyCH4V | TGCA | 4 cut(s) | 340, 563, 660, 929 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 313, 337, 403, 560, 693, 728, 900, 935 |
| HpyF3I | CTNAG | 4 cut(s) | 683, 688, 732, 874 |
| HpySE526I | ACGT | 1 cut(s) | 96 |
| Hsp92I | GRCGYC | 1 cut(s) | 833 |
| Hsp92II | CATG | 6 cut(s) | 73, 121, 797, 803, 842, 848 |
| HspAI | GCGC | 4 cut(s) | 235, 378, 729, 833 |
| KasI | GGCGCC | 1 cut(s) | 832 |
| Ksp22I | TGATCA | 3 cut(s) | 91, 796, 841 |
| Kzo9I | GATC | 6 cut(s) | 91, 113, 133, 613, 796, 841 |
| LguI | GCTCTTC | 1 cut(s) | 266 |
| LmnI | GCTCC | 6 cut(s) | 7, 173, 298, 304, 693, 943 |
| Lsp1109I | GCAGC | 9 cut(s) | 207, 229, 328, 352, 409, 563, 947, 958, 965 |
| MabI | ACCWGGT | 1 cut(s) | 252 |
| MaeI | CTAG | 3 cut(s) | 332, 642, 997 |
| MaeII | ACGT | 1 cut(s) | 96 |
| MaeIII | GTNAC | 2 cut(s) | 749, 908 |
| MalI | GATC | 6 cut(s) | 93, 115, 135, 615, 798, 843 |
| MbiI | CCGCTC | 2 cut(s) | 406, 696 |
| MboI | GATC | 6 cut(s) | 91, 113, 133, 613, 796, 841 |
| MboII | GAAGA | 8 cut(s) | 241, 283, 400, 420, 590, 593, 890, 893 |
| MflI | RGATCY | 1 cut(s) | 113 |
| MhlI | GDGCHC | 2 cut(s) | 146, 689 |
| MlsI | TGGCCA | 1 cut(s) | 323 |
| MluCI | AATT | 2 cut(s) | 451, 760 |
| MluNI | TGGCCA | 1 cut(s) | 323 |
| Mly113I | GGCGCC | 1 cut(s) | 833 |
| MlyI | GAGTC | 3 cut(s) | 452, 746, 876 |
| Mox20I | TGGCCA | 1 cut(s) | 323 |
| MscI | TGGCCA | 1 cut(s) | 323 |
| MslI | CAYNNNNRTG | 3 cut(s) | 798, 825, 843 |
| Msp20I | TGGCCA | 1 cut(s) | 323 |
| MspA1I | CMGCKG | 6 cut(s) | 220, 319, 608, 747, 864, 938 |
| MspI | CCGG | 3 cut(s) | 11, 224, 302 |
| MspR9I | CCNGG | 4 cut(s) | 12, 254, 494, 905 |
| MvaI | CCWGG | 3 cut(s) | 254, 494, 905 |
| MvnI | CGCG | 1 cut(s) | 378 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 313, 337, 403, 560, 693, 728, 900, 935 |
| NarI | GGCGCC | 1 cut(s) | 833 |
| NciI | CCSGG | 1 cut(s) | 12 |
| NdeI | CATATG | 1 cut(s) | 261 |
| NdeII | GATC | 6 cut(s) | 91, 113, 133, 613, 796, 841 |
| NlaIII | CATG | 6 cut(s) | 73, 121, 797, 803, 842, 848 |
| NlaIV | GGNNCC | 4 cut(s) | 9, 300, 365, 834 |
| NmeAIII | GCCGAG | 1 cut(s) | 369 |
| NmuCI | GTSAC | 1 cut(s) | 749 |
| NspI | RCATGY | 1 cut(s) | 73 |
| PaeR7I | CTCGAG | 2 cut(s) | 145, 401 |
| PagI | TCATGA | 2 cut(s) | 793, 799 |
| PceI | AGGCCT | 1 cut(s) | 336 |
| PciI | ACATGT | 1 cut(s) | 69 |
| PciSI | GCTCTTC | 1 cut(s) | 266 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 192 |
| PfeI | GAWTC | 2 cut(s) | 85, 475 |
| PleI | GAGTC | 3 cut(s) | 452, 746, 875 |
| PluTI | GGCGCC | 1 cut(s) | 836 |
| PpsI | GAGTC | 3 cut(s) | 452, 746, 875 |
| PscI | ACATGT | 1 cut(s) | 69 |
| Psp124BI | GAGCTC | 2 cut(s) | 146, 689 |
| Psp6I | CCWGG | 3 cut(s) | 252, 492, 903 |
| PspGI | CCWGG | 3 cut(s) | 252, 492, 903 |
| PspN4I | GGNNCC | 4 cut(s) | 9, 300, 365, 834 |
| PspPI | GGNCC | 5 cut(s) | 13, 107, 593, 676, 993 |
| PspXI | VCTCGAGB | 2 cut(s) | 145, 401 |
| PstI | CTGCAG | 1 cut(s) | 342 |
| PstNI | CAGNNNCTG | 1 cut(s) | 569 |
| PsuI | RGATCY | 1 cut(s) | 113 |
| PvuII | CAGCTG | 2 cut(s) | 220, 319 |
| RsaI | GTAC | 1 cut(s) | 258 |
| RsaNI | GTAC | 1 cut(s) | 257 |
| RseI | CAYNNNNRTG | 3 cut(s) | 798, 825, 843 |
| SacI | GAGCTC | 2 cut(s) | 146, 689 |
| SapI | GCTCTTC | 1 cut(s) | 266 |
| Sau3AI | GATC | 6 cut(s) | 91, 113, 133, 613, 796, 841 |
| Sau96I | GGNCC | 5 cut(s) | 13, 107, 593, 676, 993 |
| SchI | GAGTC | 3 cut(s) | 452, 746, 876 |
| ScrFI | CCNGG | 4 cut(s) | 12, 254, 494, 905 |
| SduI | GDGCHC | 2 cut(s) | 146, 689 |
| SexAI | ACCWGGT | 1 cut(s) | 252 |
| SfcI | CTRYAG | 1 cut(s) | 338 |
| SfoI | GGCGCC | 1 cut(s) | 834 |
| Sfr274I | CTCGAG | 2 cut(s) | 145, 401 |
| SinI | GGWCC | 2 cut(s) | 676, 993 |
| SlaI | CTCGAG | 2 cut(s) | 145, 401 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 798, 825, 843 |
| SmlI | CTYRAG | 3 cut(s) | 145, 401, 467 |
| SmoI | CTYRAG | 3 cut(s) | 145, 401, 467 |
| SpeI | ACTAGT | 1 cut(s) | 641 |
| Sse9I | AATT | 2 cut(s) | 451, 760 |
| SseBI | AGGCCT | 1 cut(s) | 336 |
| SspDI | GGCGCC | 1 cut(s) | 832 |
| SspMI | CTAG | 3 cut(s) | 332, 642, 997 |
| SstI | GAGCTC | 2 cut(s) | 146, 689 |
| StuI | AGGCCT | 1 cut(s) | 336 |
| StyD4I | CCNGG | 4 cut(s) | 10, 252, 492, 903 |
| TaaI | ACNGT | 2 cut(s) | 192, 656 |
| TaiI | ACGT | 1 cut(s) | 99 |
| TaqI | TCGA | 4 cut(s) | 103, 146, 195, 402 |
| TasI | AATT | 2 cut(s) | 451, 760 |
| TauI | GCSGC | 3 cut(s) | 240, 378, 941 |
| TfiI | GAWTC | 2 cut(s) | 85, 475 |
| TseFI | GTSAC | 1 cut(s) | 749 |
| TseI | GCWGC | 9 cut(s) | 217, 220, 316, 340, 397, 551, 935, 946, 953 |
| Tsp45I | GTSAC | 1 cut(s) | 749 |
| TspGWI | ACGGA | 1 cut(s) | 638 |
| VpaK11BI | GGWCC | 2 cut(s) | 676, 993 |
| XceI | RCATGY | 1 cut(s) | 73 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 56 |
| XhoI | CTCGAG | 2 cut(s) | 145, 401 |
| XspI | CTAG | 3 cut(s) | 332, 642, 997 |