Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008725

Physical Location & Seq

Genomic Coordinates Forward (+)

2144256 .. 2148020

Gene Structure 3765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1035100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGATGGAGCCGGGCCGTTTTTTCTTTGAACCTTCGCCGTCGTCGGCGGTTTGCCAGCAAGGTGGTGGTGGCAACATGTTGTTCCTCGGCAATCCTGATCACGGTTTTCGAGGGCAAAGATCGATGATGGGATTGATGGATCAGGAGAGCTCACGGAGGCGACCTTTTTTCAGCTCCTCCTCGTCGCAGGACGAACTGTTCGACGAGGAATACTACGACGAGCAGCTGCCGGAGAAGAAGCGCCGCCTCACTTCTGACCAGGTGCATATGCTGGAGAAGAGCTTTGAGACAGAGAACAAGCTGGAGCCGGAGCGAAAGACGCAGCTGGCCAAGAAGCTAGGACTGCAGCCGAGACAGGTGGCCGTGTGGTTCCAGAACCGCCGCGCTCGGTGGAAGACCAAGCAGCTCGAGCGCGATTACGACCTTCTCAAGTCTTCCTATGACACCCTTTTGTCTGATTACGACTCCATCCTCAAGGAGAATCAGAAGCTCAAATCCCAGGTGGTTTCCATAAACGAGAAGCTTGGAGGTAAAGAGCAGGCTAGTAGCACAAAAGCAACAGCATTTGCAGCGGATGATCACGATGACGAGAAGCGCGGCCCTCTTCTTCCAGCCGGTGATCAGTTGACGGAGGTTGTTCCGATAACTAGTCTCCAGTATAGCTGCAGCGTCAAGGTGGAGGACCGCCTGAGCTCAGGGAGCGGAGGAAGTGCCGTGGTGGACGAGGCCGAAGGCCCTCAGCCTGTGGACAGCAGTGACTCCTATAATTTCCCAAACAACATCCACAATTACTACTCTCATGATCATGACACTCATCATCATCATCATCATCATCAATACACGGCGCCACATGATCATGTAGAACATCATCGTAGAGGAGTCCACTCAGAAGAAGATGACGGTAGCGATGACGGCCAGTGTTACTTCTCCGATGTCTTTGCAGCCGCAGCAGCGGAGCAGCAAGCAGCACAGGAGGAAGGTGTTTCTTTGAACTGGTGGGGATGGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

337

Amino Acids

38.15

Weight (kDa)

5.29

Isoelectric Point (pI)

59.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	79 - 132	3.1e-18	Homeodomain
HALZ	PF02183	134 - 175	3e-17	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20280 AT1G61200 AT3G01470
fragaria_vesca	FvH4_6g50570
malus_domestica	MD09G1035100.v1.1 MD13G1014900.v1.1 MD13G1196700.v1.1 MD17G1035400.v1.1
prunus_persica	Prupe.3G283200_v2.0.a1
pyrus_communis	pycom111g02800 pycom17g03260
rosa_chinensis	RchiOBHm_Chr2g0171091
rosa_laevigata	RLG00000022002
rosa_multiflora	Rmu_sc0004565.1_g000009 Rmu_sc0007623.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080820
rosa_rugosa	Rorug02G0553600
rosa_samantha	Rh2AG627200 Rh2BG637100 Rh2CG606100 Rh2DG648700 Rh2DG654300
rosa_wichuraiana	Rw2G051910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	844
AccBSI	CCGCTC	1 cut(s)	702
AccII	CGCG	3 cut(s)	384, 414, 597
AclWI	GGATC	1 cut(s)	147
AcoI	YGGCCR	3 cut(s)	327, 360, 913
AcyI	GRCGYC	1 cut(s)	845
AfiI	CCNNNNNNNGG	1 cut(s)	101
AflIII	ACRYGT	1 cut(s)	75
AgsI	TTSAA	2 cut(s)	29, 991
AhlI	ACTAGT	1 cut(s)	647
AjnI	CCWGG	2 cut(s)	258, 498
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
Alw21I	GWGCWC	2 cut(s)	152, 695
Alw26I	GTCTC	3 cut(s)	281, 346, 656
AlwI	GGATC	1 cut(s)	147
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	7 cut(s)	13, 327, 360, 598, 726, 733, 913
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AspLEI	GCGC	5 cut(s)	243, 386, 414, 597, 847
AspS9I	GGNCC	4 cut(s)	13, 599, 682, 734
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	629
AvaI	CYCGRG	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	682
BalI	TGGCCA	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	844
BanII	GRGCYC	2 cut(s)	152, 695
BbsI	GAAGAC	2 cut(s)	401, 426
Bbv12I	GWGCWC	2 cut(s)	152, 695
BbvCI	CCTCAGC	1 cut(s)	738
BccI	CCATC	4 cut(s)	121, 130, 476, 996
BceAI	ACGGC	5 cut(s)	22, 347, 698, 858, 928
BcgI	CGANNNNNNTGC	2 cut(s)	920, 954
BciT130I	CCWGG	2 cut(s)	260, 500
BclI	TGATCA	5 cut(s)	97, 577, 619, 802, 853
BcnI	CCSGG	1 cut(s)	12
BcoDI	GTCTC	3 cut(s)	281, 346, 656
BcuI	ACTAGT	1 cut(s)	647
BfaI	CTAG	3 cut(s)	338, 543, 648
BfmI	CTRYAG	2 cut(s)	344, 664
BfoI	RGCGCY	2 cut(s)	244, 848
Bme1390I	CCNGG	3 cut(s)	12, 260, 500
Bme18I	GGWCC	1 cut(s)	682
BmeT110I	CYCGRG	1 cut(s)	407
BmgT120I	GGNCC	4 cut(s)	13, 599, 682, 734
BmiI	GGNNCC	4 cut(s)	9, 306, 371, 846
BmrFI	CCNGG	3 cut(s)	12, 260, 500
BpiI	GAAGAC	2 cut(s)	401, 426
BpmI	CTGGAG	3 cut(s)	293, 323, 638
Bpu10I	CCTNAGC	3 cut(s)	689, 694, 738
BpuEI	CTTGAG	2 cut(s)	413, 458
BpuMI	CCSGG	1 cut(s)	12
Bsa29I	ATCGAT	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	845
BsaJI	CCNNGG	3 cut(s)	85, 498, 714
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse118I	RCCGGY	1 cut(s)	614
Bse1I	ACTGG	3 cut(s)	655, 916, 998
BseBI	CCWGG	2 cut(s)	260, 500
BseCI	ATCGAT	1 cut(s)	122
BseDI	CCNNGG	3 cut(s)	85, 498, 714
BseGI	GGATG	4 cut(s)	468, 580, 780, 1007
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	4 cut(s)	680, 708, 752, 900
BseNI	ACTGG	3 cut(s)	655, 916, 998
BseRI	GAGGAG	3 cut(s)	166, 169, 891
Bsh1236I	CGCG	3 cut(s)	384, 414, 597
BshFI	GGCC	7 cut(s)	15, 329, 362, 600, 728, 735, 915
BshNI	GGYRCC	1 cut(s)	844
BshVI	ATCGAT	1 cut(s)	122
BsiHKAI	GWGCWC	2 cut(s)	152, 695
BsiHKCI	CYCGRG	1 cut(s)	407
BsiSI	CCGG	4 cut(s)	11, 230, 308, 615
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	3 cut(s)	281, 346, 656
BsnI	GGCC	7 cut(s)	15, 329, 362, 600, 728, 735, 915
BsoBI	CYCGRG	1 cut(s)	407
Bsp1286I	GDGCHC	2 cut(s)	152, 695
Bsp143I	GATC	7 cut(s)	97, 119, 139, 577, 619, 802, 853
BspANI	GGCC	7 cut(s)	15, 329, 362, 600, 728, 735, 915
BspCNI	CTCAG	4 cut(s)	681, 707, 751, 899
BspDI	ATCGAT	1 cut(s)	122
BspFNI	CGCG	3 cut(s)	384, 414, 597
BspHI	TCATGA	2 cut(s)	799, 805
BspLI	GGNNCC	4 cut(s)	9, 306, 371, 846
BspMAI	CTGCAG	2 cut(s)	348, 668
BspPI	GGATC	1 cut(s)	147
BspQI	GCTCTTC	1 cut(s)	272
BspT107I	GGYRCC	1 cut(s)	844
BsrBI	CCGCTC	1 cut(s)	702
BsrFI	RCCGGY	1 cut(s)	614
BsrI	ACTGG	3 cut(s)	655, 916, 998
BssAI	RCCGGY	1 cut(s)	614
BssECI	CCNNGG	3 cut(s)	85, 498, 714
BssMI	GATC	7 cut(s)	97, 119, 139, 577, 619, 802, 853
BssNI	GRCGYC	1 cut(s)	845
Bst2UI	CCWGG	2 cut(s)	260, 500
Bst4CI	ACNGT	3 cut(s)	104, 198, 902
Bst6I	CTCTTC	2 cut(s)	272, 609
BstACI	GRCGYC	1 cut(s)	845
BstC8I	GCNNGC	4 cut(s)	56, 327, 540, 963
BstDEI	CTNAG	4 cut(s)	689, 694, 738, 886
BstDSI	CCRYGG	1 cut(s)	714
BstF5I	GGATG	4 cut(s)	468, 580, 780, 1007
BstFNI	CGCG	3 cut(s)	384, 414, 597
BstH2I	RGCGCY	2 cut(s)	244, 848
BstHHI	GCGC	5 cut(s)	243, 386, 414, 597, 847
BstKTI	GATC	7 cut(s)	100, 122, 142, 580, 622, 805, 856
BstMAI	GTCTC	3 cut(s)	281, 346, 656
BstMBI	GATC	7 cut(s)	97, 119, 139, 577, 619, 802, 853
BstMWI	GCNNNNNNNGC	8 cut(s)	319, 343, 409, 569, 699, 912, 947, 950
BstNI	CCWGG	2 cut(s)	260, 500
BstNSI	RCATGY	1 cut(s)	79
BstSCI	CCNGG	3 cut(s)	10, 258, 498
BstSFI	CTRYAG	2 cut(s)	344, 664
BstUI	CGCG	3 cut(s)	384, 414, 597
BstV2I	GAAGAC	2 cut(s)	401, 426
BstXI	CCANNNNNNTGG	1 cut(s)	62
Bsu15I	ATCGAT	1 cut(s)	122
BsuRI	GGCC	7 cut(s)	15, 329, 362, 600, 728, 735, 915
BsuTUI	ATCGAT	1 cut(s)	122
BtgI	CCRYGG	1 cut(s)	714
BtgZI	GCGATG	1 cut(s)	921
BtsCI	GGATG	4 cut(s)	468, 580, 780, 1007
BtsI	GCAGTG	1 cut(s)	760
BtsIMutI	CAGTG	2 cut(s)	760, 923
Cac8I	GCNNGC	4 cut(s)	56, 327, 540, 963
CciI	TCATGA	2 cut(s)	799, 805
CfoI	GCGC	5 cut(s)	243, 386, 414, 597, 847
Cfr10I	RCCGGY	1 cut(s)	614
Cfr13I	GGNCC	4 cut(s)	13, 599, 682, 734
ClaI	ATCGAT	1 cut(s)	122
CseI	GACGC	2 cut(s)	328, 658
CsiI	ACCWGGT	1 cut(s)	258
CviAII	CATG	5 cut(s)	76, 800, 806, 851, 857
DdeI	CTNAG	4 cut(s)	689, 694, 738, 886
DinI	GGCGCC	1 cut(s)	846
DpnI	GATC	7 cut(s)	99, 121, 141, 579, 621, 804, 855
DpnII	GATC	7 cut(s)	97, 119, 139, 577, 619, 802, 853
EaeI	YGGCCR	3 cut(s)	327, 360, 913
Eam1104I	CTCTTC	2 cut(s)	272, 609
EarI	CTCTTC	2 cut(s)	272, 609
Ecl136II	GAGCTC	2 cut(s)	150, 693
Eco24I	GRGCYC	2 cut(s)	152, 695
Eco47I	GGWCC	1 cut(s)	682
Eco53kI	GAGCTC	2 cut(s)	150, 693
Eco88I	CYCGRG	1 cut(s)	407
EcoICRI	GAGCTC	2 cut(s)	150, 693
EcoO109I	RGGNCCY	1 cut(s)	734
EcoRII	CCWGG	2 cut(s)	258, 498
EcoT38I	GRGCYC	2 cut(s)	152, 695
EgeI	GGCGCC	1 cut(s)	846
EheI	GGCGCC	1 cut(s)	846
FaeI	CATG	5 cut(s)	79, 803, 809, 854, 860
FatI	CATG	5 cut(s)	75, 799, 805, 850, 856
FauNDI	CATATG	1 cut(s)	267
FbaI	TGATCA	5 cut(s)	97, 577, 619, 802, 853
FokI	GGATG	3 cut(s)	455, 587, 767
FriOI	GRGCYC	2 cut(s)	152, 695
FspBI	CTAG	3 cut(s)	338, 543, 648
GlaI	GCGC	5 cut(s)	242, 385, 413, 596, 846
GsuI	CTGGAG	3 cut(s)	293, 323, 638
HaeII	RGCGCY	2 cut(s)	244, 848
HaeIII	GGCC	7 cut(s)	15, 329, 362, 600, 728, 735, 915
HapII	CCGG	4 cut(s)	11, 230, 308, 615
HgaI	GACGC	2 cut(s)	328, 658
HhaI	GCGC	5 cut(s)	243, 386, 414, 597, 847
Hin1I	GRCGYC	1 cut(s)	845
Hin1II	CATG	5 cut(s)	79, 803, 809, 854, 860
Hin6I	GCGC	5 cut(s)	241, 384, 412, 595, 845
HinP1I	GCGC	5 cut(s)	241, 384, 412, 595, 845
HincII	GTYRAC	1 cut(s)	627
HindII	GTYRAC	1 cut(s)	627
HindIII	AAGCTT	1 cut(s)	521
HinfI	GANTC	4 cut(s)	464, 481, 758, 879
HpaII	CCGG	4 cut(s)	11, 230, 308, 615
HphI	GGTGA	1 cut(s)	629
Hpy166II	GTNNAC	4 cut(s)	627, 721, 748, 883
Hpy188I	TCNGA	6 cut(s)	256, 457, 486, 642, 889, 931
Hpy188III	TCNNGA	6 cut(s)	95, 143, 373, 581, 800, 806
Hpy8I	GTNNAC	4 cut(s)	627, 721, 748, 883
Hpy99I	CGWCG	5 cut(s)	43, 46, 187, 206, 221
HpyAV	CCTTC	4 cut(s)	42, 434, 725, 971
HpyCH4III	ACNGT	3 cut(s)	104, 198, 902
HpyCH4V	TGCA	5 cut(s)	265, 346, 569, 666, 941
HpyF10VI	GCNNNNNNNGC	8 cut(s)	319, 343, 409, 569, 699, 912, 947, 950
HpyF3I	CTNAG	4 cut(s)	689, 694, 738, 886
Hsp92I	GRCGYC	1 cut(s)	845
Hsp92II	CATG	5 cut(s)	79, 803, 809, 854, 860
HspAI	GCGC	5 cut(s)	241, 384, 412, 595, 845
KasI	GGCGCC	1 cut(s)	844
Ksp22I	TGATCA	5 cut(s)	97, 577, 619, 802, 853
Kzo9I	GATC	7 cut(s)	97, 119, 139, 577, 619, 802, 853
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	6 cut(s)	7, 179, 304, 310, 699, 955
MabI	ACCWGGT	1 cut(s)	258
MaeI	CTAG	3 cut(s)	338, 543, 648
MaeIII	GTNAC	2 cut(s)	755, 920
MalI	GATC	7 cut(s)	99, 121, 141, 579, 621, 804, 855
MbiI	CCGCTC	1 cut(s)	702
MboI	GATC	7 cut(s)	97, 119, 139, 577, 619, 802, 853
MboII	GAAGA	8 cut(s)	247, 289, 406, 426, 596, 599, 902, 905
MhlI	GDGCHC	2 cut(s)	152, 695
MlsI	TGGCCA	1 cut(s)	329
MluCI	AATT	2 cut(s)	766, 787
MluNI	TGGCCA	1 cut(s)	329
Mly113I	GGCGCC	1 cut(s)	845
MlyI	GAGTC	3 cut(s)	458, 752, 888
Mox20I	TGGCCA	1 cut(s)	329
MscI	TGGCCA	1 cut(s)	329
MslI	CAYNNNNRTG	2 cut(s)	804, 855
Msp20I	TGGCCA	1 cut(s)	329
MspA1I	CMGCKG	4 cut(s)	226, 325, 572, 953
MspI	CCGG	4 cut(s)	11, 230, 308, 615
MspR9I	CCNGG	3 cut(s)	12, 260, 500
MvaI	CCWGG	2 cut(s)	260, 500
MvnI	CGCG	3 cut(s)	384, 414, 597
MwoI	GCNNNNNNNGC	8 cut(s)	319, 343, 409, 569, 699, 912, 947, 950
NarI	GGCGCC	1 cut(s)	845
NciI	CCSGG	1 cut(s)	12
NdeI	CATATG	1 cut(s)	267
NdeII	GATC	7 cut(s)	97, 119, 139, 577, 619, 802, 853
NlaIII	CATG	5 cut(s)	79, 803, 809, 854, 860
NlaIV	GGNNCC	4 cut(s)	9, 306, 371, 846
NmeAIII	GCCGAG	2 cut(s)	66, 375
NmuCI	GTSAC	1 cut(s)	755
NspI	RCATGY	1 cut(s)	79
PaeR7I	CTCGAG	1 cut(s)	407
PagI	TCATGA	2 cut(s)	799, 805
PciI	ACATGT	1 cut(s)	75
PciSI	GCTCTTC	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	481
PleI	GAGTC	3 cut(s)	458, 752, 887
PluTI	GGCGCC	1 cut(s)	848
PpsI	GAGTC	3 cut(s)	458, 752, 887
PscI	ACATGT	1 cut(s)	75
Psp124BI	GAGCTC	2 cut(s)	152, 695
Psp6I	CCWGG	2 cut(s)	258, 498
PspGI	CCWGG	2 cut(s)	258, 498
PspN4I	GGNNCC	4 cut(s)	9, 306, 371, 846
PspPI	GGNCC	4 cut(s)	13, 599, 682, 734
PspXI	VCTCGAGB	1 cut(s)	407
PstI	CTGCAG	2 cut(s)	348, 668
PvuII	CAGCTG	2 cut(s)	226, 325
RseI	CAYNNNNRTG	2 cut(s)	804, 855
SacI	GAGCTC	2 cut(s)	152, 695
SapI	GCTCTTC	1 cut(s)	272
Sau3AI	GATC	7 cut(s)	97, 119, 139, 577, 619, 802, 853
Sau96I	GGNCC	4 cut(s)	13, 599, 682, 734
SchI	GAGTC	3 cut(s)	458, 752, 888
ScrFI	CCNGG	3 cut(s)	12, 260, 500
SduI	GDGCHC	2 cut(s)	152, 695
SexAI	ACCWGGT	1 cut(s)	258
SfcI	CTRYAG	2 cut(s)	344, 664
SfoI	GGCGCC	1 cut(s)	846
Sfr274I	CTCGAG	1 cut(s)	407
SinI	GGWCC	1 cut(s)	682
SlaI	CTCGAG	1 cut(s)	407
SmiMI	CAYNNNNRTG	2 cut(s)	804, 855
SmlI	CTYRAG	3 cut(s)	407, 428, 473
SmoI	CTYRAG	3 cut(s)	407, 428, 473
SpeI	ACTAGT	1 cut(s)	647
Sse9I	AATT	2 cut(s)	766, 787
SspDI	GGCGCC	1 cut(s)	844
SspMI	CTAG	3 cut(s)	338, 543, 648
SstI	GAGCTC	2 cut(s)	152, 695
StyD4I	CCNGG	3 cut(s)	10, 258, 498
TaaI	ACNGT	3 cut(s)	104, 198, 902
TaqI	TCGA	4 cut(s)	109, 122, 201, 408
TasI	AATT	2 cut(s)	766, 787
TauI	GCSGC	4 cut(s)	246, 384, 600, 947
TfiI	GAWTC	1 cut(s)	481
TscAI	CASTG	2 cut(s)	760, 923
TseFI	GTSAC	1 cut(s)	755
Tsp45I	GTSAC	1 cut(s)	755
TspGWI	ACGGA	2 cut(s)	169, 644
TspRI	CASTG	2 cut(s)	760, 923
VpaK11BI	GGWCC	1 cut(s)	682
XceI	RCATGY	1 cut(s)	79
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XhoI	CTCGAG	1 cut(s)	407
XspI	CTAG	3 cut(s)	338, 543, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.