Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008725

Physical Location & Seq

Genomic Coordinates Reverse (-)

960559 .. 961751

Gene Structure 1193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1014900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGATCAGGAGAGCTCACGGAGGCGACCTTTTTTTCAGCTCCTCCTCGTCGAGGACGAACTGTTCGACGAGGAAATACTACGCGAGCAGCTGCCGGAGAAGAAGCGCCGCCTCACTTCTGACCAGAAAGAGCTTGAGACAGAGAACAAGCTGGAGCCGGAGCGAAAGACGCAGCTGGCCAAGAAGCTAGGACTGCAGCCGAGACAGGTGGCCGTGGTTCCAGAACCGCCGCGCTCAGGGAAGACCAAGCAGCTCGAGCGCGATTTACGACCTCTCAAGTCTTCCTATGACACCCTTTTGTTGATTACGACTCCATCCTCAAGGAGAAATCGAAGCTCAAAATCCCAGGTAATTTTAATTATCACTAGTATTGCATTACCTGGTTTTCCAAGTAATTTTTTCAATTTCAGAATGAGAGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

142

Amino Acids

16.57

Weight (kDa)

9.69

Isoelectric Point (pI)

84.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20280 AT1G61200 AT3G01470
fragaria_vesca	FvH4_6g50570
malus_domestica	MD09G1035100.v1.1 MD13G1014900.v1.1 MD13G1196700.v1.1 MD17G1035400.v1.1
prunus_persica	Prupe.3G283200_v2.0.a1
pyrus_communis	pycom111g02800 pycom17g03260
rosa_chinensis	RchiOBHm_Chr2g0171091
rosa_laevigata	RLG00000022002
rosa_multiflora	Rmu_sc0004565.1_g000009 Rmu_sc0007623.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080820
rosa_rugosa	Rorug02G0553600
rosa_samantha	Rh2AG627200 Rh2BG637100 Rh2CG606100 Rh2DG648700 Rh2DG654300
rosa_wichuraiana	Rw2G051910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	84, 232, 261
AciI	CCGC	3 cut(s)	109, 227, 230
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	177, 210
AfiI	CCNNNNNNNGG	2 cut(s)	52, 236
AgsI	TTSAA	1 cut(s)	403
AhlI	ACTAGT	1 cut(s)	365
AjnI	CCWGG	2 cut(s)	345, 379
AloI	GAACNNNNNNTCC	2 cut(s)	47, 79
AluBI	AGCT	9 cut(s)	15, 40, 91, 133, 151, 175, 187, 253, 336
AluI	AGCT	9 cut(s)	15, 40, 91, 133, 151, 175, 187, 253, 336
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	2 cut(s)	131, 196
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	2 cut(s)	177, 210
ApeKI	GCWGC	5 cut(s)	88, 91, 172, 196, 250
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AspLEI	GCGC	3 cut(s)	108, 234, 261
AvaI	CYCGRG	1 cut(s)	254
BalI	TGGCCA	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	17
BbsI	GAAGAC	2 cut(s)	248, 273
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	5 cut(s)	78, 100, 184, 208, 262
BccI	CCATC	1 cut(s)	322
BceAI	ACGGC	1 cut(s)	197
BciT130I	CCWGG	2 cut(s)	347, 381
BcoDI	GTCTC	2 cut(s)	131, 196
BcuI	ACTAGT	1 cut(s)	365
BfaI	CTAG	2 cut(s)	188, 366
BfmI	CTRYAG	1 cut(s)	194
BfoI	RGCGCY	1 cut(s)	109
BisI	GCNGC	7 cut(s)	89, 92, 109, 173, 197, 230, 251
BlsI	GCNGC	7 cut(s)	90, 93, 110, 174, 198, 231, 252
Bme1390I	CCNGG	2 cut(s)	347, 381
BmeT110I	CYCGRG	1 cut(s)	254
BmiI	GGNNCC	2 cut(s)	156, 219
BmrFI	CCNGG	2 cut(s)	347, 381
BpiI	GAAGAC	2 cut(s)	248, 273
BpmI	CTGGAG	1 cut(s)	173
Bpu10I	CCTNAGC	1 cut(s)	235
BpuEI	CTTGAG	3 cut(s)	155, 260, 304
BsaJI	CCNNGG	2 cut(s)	213, 345
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 236
BseBI	CCWGG	2 cut(s)	347, 381
BseDI	CCNNGG	2 cut(s)	213, 345
BseGI	GGATG	1 cut(s)	314
BseLI	CCNNNNNNNGG	2 cut(s)	52, 236
BseMII	CTCAG	1 cut(s)	249
BseRI	GAGGAG	2 cut(s)	32, 35
BseXI	GCAGC	5 cut(s)	78, 100, 184, 208, 262
Bsh1236I	CGCG	3 cut(s)	84, 232, 261
BshFI	GGCC	2 cut(s)	179, 212
BsiHKAI	GWGCWC	1 cut(s)	17
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	2 cut(s)	95, 158
BslI	CCNNNNNNNGG	2 cut(s)	52, 236
BsmAI	GTCTC	2 cut(s)	131, 196
BsnI	GGCC	2 cut(s)	179, 212
BsoBI	CYCGRG	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	3 cut(s)	109, 227, 230
BspANI	GGCC	2 cut(s)	179, 212
BspCNI	CTCAG	1 cut(s)	248
BspFNI	CGCG	3 cut(s)	84, 232, 261
BspLI	GGNNCC	2 cut(s)	156, 219
BspMAI	CTGCAG	1 cut(s)	198
BspPI	GGATC	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	213, 345
BssMI	GATC	1 cut(s)	4
Bst2UI	CCWGG	2 cut(s)	347, 381
Bst4CI	ACNGT	1 cut(s)	63
BstC8I	GCNNGC	2 cut(s)	86, 177
BstDEI	CTNAG	1 cut(s)	235
BstDSI	CCRYGG	1 cut(s)	213
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	314
BstFNI	CGCG	3 cut(s)	84, 232, 261
BstH2I	RGCGCY	1 cut(s)	109
BstHHI	GCGC	3 cut(s)	108, 234, 261
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	2 cut(s)	131, 196
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	3 cut(s)	169, 193, 256
BstNI	CCWGG	2 cut(s)	347, 381
BstSCI	CCNGG	2 cut(s)	345, 379
BstSFI	CTRYAG	1 cut(s)	194
BstUI	CGCG	3 cut(s)	84, 232, 261
BstV1I	GCAGC	5 cut(s)	78, 100, 184, 208, 262
BstV2I	GAAGAC	2 cut(s)	248, 273
BsuRI	GGCC	2 cut(s)	179, 212
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	314
Cac8I	GCNNGC	2 cut(s)	86, 177
CfoI	GCGC	3 cut(s)	108, 234, 261
CseI	GACGC	1 cut(s)	178
CsiI	ACCWGGT	1 cut(s)	379
DdeI	CTNAG	1 cut(s)	235
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
EaeI	YGGCCR	2 cut(s)	177, 210
Ecl136II	GAGCTC	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	17
Eco53kI	GAGCTC	1 cut(s)	15
Eco88I	CYCGRG	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	15
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoRII	CCWGG	2 cut(s)	345, 379
EcoT38I	GRGCYC	1 cut(s)	17
FaiI	YATR	1 cut(s)	288
Fnu4HI	GCNGC	7 cut(s)	89, 92, 109, 173, 197, 230, 251
FokI	GGATG	1 cut(s)	301
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	7 cut(s)	89, 92, 109, 173, 197, 230, 251
FspBI	CTAG	2 cut(s)	188, 366
GlaI	GCGC	3 cut(s)	107, 233, 260
GluI	GCNGC	7 cut(s)	89, 92, 109, 173, 197, 230, 251
GsuI	CTGGAG	1 cut(s)	173
HaeII	RGCGCY	1 cut(s)	109
HaeIII	GGCC	2 cut(s)	179, 212
HapII	CCGG	2 cut(s)	95, 158
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	3 cut(s)	108, 234, 261
Hin6I	GCGC	3 cut(s)	106, 232, 259
HinP1I	GCGC	3 cut(s)	106, 232, 259
HinfI	GANTC	1 cut(s)	310
HpaII	CCGG	2 cut(s)	95, 158
Hpy188I	TCNGA	2 cut(s)	121, 410
Hpy188III	TCNNGA	2 cut(s)	8, 221
Hpy99I	CGWCG	2 cut(s)	53, 71
HpyCH4III	ACNGT	1 cut(s)	63
HpyCH4V	TGCA	2 cut(s)	196, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	169, 193, 256
HpyF3I	CTNAG	1 cut(s)	235
HspAI	GCGC	3 cut(s)	106, 232, 259
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	3 cut(s)	45, 154, 160
Lsp1109I	GCAGC	5 cut(s)	78, 100, 184, 208, 262
MabI	ACCWGGT	1 cut(s)	379
MaeI	CTAG	2 cut(s)	188, 366
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	3 cut(s)	112, 253, 273
MhlI	GDGCHC	1 cut(s)	17
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	4 cut(s)	351, 357, 394, 403
MluNI	TGGCCA	1 cut(s)	179
MlyI	GAGTC	1 cut(s)	304
MnlI	CCTC	8 cut(s)	15, 46, 53, 56, 64, 122, 282, 328
Mox20I	TGGCCA	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	2 cut(s)	356, 424
Msp20I	TGGCCA	1 cut(s)	179
MspA1I	CMGCKG	2 cut(s)	91, 175
MspI	CCGG	2 cut(s)	95, 158
MspR9I	CCNGG	2 cut(s)	347, 381
MvaI	CCWGG	2 cut(s)	347, 381
MvnI	CGCG	3 cut(s)	84, 232, 261
MwoI	GCNNNNNNNGC	3 cut(s)	169, 193, 256
NdeII	GATC	1 cut(s)	4
NlaIV	GGNNCC	2 cut(s)	156, 219
NmeAIII	GCCGAG	1 cut(s)	225
PaeR7I	CTCGAG	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 63
PkrI	GCNGC	7 cut(s)	90, 93, 110, 174, 198, 231, 252
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp124BI	GAGCTC	1 cut(s)	17
Psp6I	CCWGG	2 cut(s)	345, 379
PspGI	CCWGG	2 cut(s)	345, 379
PspN4I	GGNNCC	2 cut(s)	156, 219
PspXI	VCTCGAGB	1 cut(s)	254
PstI	CTGCAG	1 cut(s)	198
PvuII	CAGCTG	2 cut(s)	91, 175
SacI	GAGCTC	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	356, 424
SatI	GCNGC	7 cut(s)	89, 92, 109, 173, 197, 230, 251
Sau3AI	GATC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	304
ScrFI	CCNGG	2 cut(s)	347, 381
SduI	GDGCHC	1 cut(s)	17
SexAI	ACCWGGT	1 cut(s)	379
SfcI	CTRYAG	1 cut(s)	194
Sfr274I	CTCGAG	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	254
SmlI	CTYRAG	4 cut(s)	134, 254, 275, 319
SmoI	CTYRAG	4 cut(s)	134, 254, 275, 319
SpeI	ACTAGT	1 cut(s)	365
Sse9I	AATT	4 cut(s)	351, 357, 394, 403
SsiI	CCGC	3 cut(s)	109, 227, 230
SspMI	CTAG	2 cut(s)	188, 366
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	2 cut(s)	345, 379
TaaI	ACNGT	1 cut(s)	63
TaqI	TCGA	4 cut(s)	51, 66, 255, 331
TasI	AATT	4 cut(s)	351, 357, 394, 403
TauI	GCSGC	2 cut(s)	111, 232
Tru1I	TTAA	2 cut(s)	356, 424
Tru9I	TTAA	2 cut(s)	356, 424
TseI	GCWGC	5 cut(s)	88, 91, 172, 196, 250
TspGWI	ACGGA	1 cut(s)	34
XagI	CCTNNNNNAGG	1 cut(s)	50
XhoI	CTCGAG	1 cut(s)	254
XspI	CTAG	2 cut(s)	188, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.