Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008725

Physical Location & Seq

Genomic Coordinates Reverse (-)

37618564 .. 37621897

Gene Structure 3334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGATGGAGCCGGGCCGTCTTTTCTTTGATCCTCAGCAAGGTGGCGGTGGCAACATGTTGTTCCTTGGGAGTGGTGATCAAGTTTTCCGAGGGTCGAGATCGATGATGGGGATGGAGGAAACTTCGAGGAGGCGATCGTTTTTCAGCACGCAAGATGAATTGTACGAGGAGGAATATTACGACGAGCAGATGCCGGAGAAGAAGCGCCGCCTCACTACCGAGCAGGTGCATCTGCTGGAGAAGAGCTTTGAGACAGAGAACAAACTGGAGCCGGATCGGAAGACGCAGCTGGCCAAGAAGCTAGGGCTGCAGCCAAGGCAGGTGGCTGTGTGGTTCCAGAACCGTAGGGCTCGATGGAAGACAAAGCAGCTCGAGCGCGATTATGATGTTCTAAAAGCGTCTTATGACTCCCTTTTGGCCAACTATGATTCTATCCTCAAGGAGAATCAGAAGCTCAAATCTGAGGTGGTCACCATAACTGAGAAACTTGAAGCTAAAGATCAGGAGGCTAAAGGAGCAGCATTTGCAGGTGATCATGATCATGATGAGAAGTGTGACCCTGTTCATCTTCTTCCAAGTGAGAAAGAGATGATCACGGATGTTAATGTTCCAATGAGTCTCCAGCTTAGTGTCAAGGTTGAGGATCGCCTGAGCTCCGGGAGCGGTGGAAGTGCCGTGGTGGACGAGGAAAGCCCTCAGCTCGTGGACAGCGGTGACTCTTATTTCCCAAGTAGCTGTGACGTTCACAATTATGATCATCCTCATCTTCCTCATGATGATCATCACTGCATGGGGCTAGTAGTTGGAGTCCACTCGGAGGAGGATGATGGCAGCGATGACGGCCGGAATTACTTCTCCGAAGTGTTTGCCGCCGCTGCAGTGCAGCAGCAGCCGGAGGATGGAGTGTCTATGGGCTGGTGGGTGTGGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

311

Amino Acids

35.29

Weight (kDa)

4.84

Isoelectric Point (pI)

65.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	67 - 120	7.8e-18	Homeodomain
HALZ	PF02183	122 - 163	2.5e-18	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20280 AT1G61200 AT3G01470
fragaria_vesca	FvH4_6g50570
malus_domestica	MD09G1035100.v1.1 MD13G1014900.v1.1 MD13G1196700.v1.1 MD17G1035400.v1.1
prunus_persica	Prupe.3G283200_v2.0.a1
pyrus_communis	pycom111g02800 pycom17g03260
rosa_chinensis	RchiOBHm_Chr2g0171091
rosa_laevigata	RLG00000022002
rosa_multiflora	Rmu_sc0004565.1_g000009 Rmu_sc0007623.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080820
rosa_rugosa	Rorug02G0553600
rosa_samantha	Rh2AG627200 Rh2BG637100 Rh2CG606100 Rh2DG648700 Rh2DG654300
rosa_wichuraiana	Rw2G051910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	214, 310, 518
Acc36I	ACCTGC	3 cut(s)	214, 310, 518
AccBSI	CCGCTC	1 cut(s)	663
AccII	CGCG	1 cut(s)	378
AciI	CCGC	6 cut(s)	45, 208, 663, 711, 870, 873
AclWI	GGATC	3 cut(s)	23, 282, 651
AcoI	YGGCCR	3 cut(s)	291, 417, 841
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	3 cut(s)	38, 817, 899
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	1 cut(s)	491
Alw21I	GWGCWC	1 cut(s)	656
Alw26I	GTCTC	2 cut(s)	245, 623
AlwI	GGATC	3 cut(s)	23, 282, 651
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	4 cut(s)	13, 291, 417, 841
Asp700I	GAANNNNTTC	1 cut(s)	851
AspLEI	GCGC	2 cut(s)	207, 378
AspS9I	GGNCC	2 cut(s)	13, 927
AsuC2I	CCSGG	2 cut(s)	12, 658
AsuHPI	GGTGA	4 cut(s)	86, 463, 542, 725
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	927
BalI	TGGCCA	2 cut(s)	293, 419
BanII	GRGCYC	2 cut(s)	352, 656
BauI	CACGAG	1 cut(s)	701
BbsI	GAAGAC	2 cut(s)	287, 365
Bbv12I	GWGCWC	1 cut(s)	656
BbvCI	CCTCAGC	2 cut(s)	33, 696
BccI	CCATC	5 cut(s)	100, 106, 348, 821, 893
BceAI	ACGGC	2 cut(s)	659, 856
BcgI	CGANNNNNNTGC	2 cut(s)	848, 882
BclI	TGATCA	6 cut(s)	76, 532, 538, 591, 754, 778
BcnI	CCSGG	2 cut(s)	12, 658
BcoDI	GTCTC	2 cut(s)	245, 623
BfaI	CTAG	3 cut(s)	302, 797, 931
BfmI	CTRYAG	2 cut(s)	308, 876
BfoI	RGCGCY	1 cut(s)	208
BfuAI	ACCTGC	3 cut(s)	214, 310, 518
Bme1390I	CCNGG	2 cut(s)	12, 658
Bme18I	GGWCC	1 cut(s)	927
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	2 cut(s)	13, 927
BmiI	GGNNCC	3 cut(s)	9, 270, 335
BmrFI	CCNGG	2 cut(s)	12, 658
BmsI	GCATC	2 cut(s)	180, 238
BpiI	GAAGAC	2 cut(s)	287, 365
BpmI	CTGGAG	3 cut(s)	257, 287, 605
Bpu10I	CCTNAGC	3 cut(s)	33, 650, 696
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	2 cut(s)	12, 658
Bsa29I	ATCGAT	1 cut(s)	101
BsaBI	GATNNNNATC	2 cut(s)	537, 780
BsaJI	CCNNGG	4 cut(s)	64, 88, 314, 675
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 817, 899
Bse1I	ACTGG	1 cut(s)	270
Bse8I	GATNNNNATC	2 cut(s)	537, 780
BseCI	ATCGAT	1 cut(s)	101
BseDI	CCNNGG	4 cut(s)	64, 88, 314, 675
BseGI	GGATG	5 cut(s)	117, 604, 757, 829, 904
BseJI	GATNNNNATC	2 cut(s)	537, 780
BseLI	CCNNNNNNNGG	3 cut(s)	38, 817, 899
BseMII	CTCAG	5 cut(s)	47, 453, 471, 641, 710
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	3 cut(s)	142, 182, 833
BseX3I	CGGCCG	1 cut(s)	841
BsgI	GTGCAG	1 cut(s)	902
Bsh1236I	CGCG	1 cut(s)	378
Bsh1285I	CGRYCG	2 cut(s)	137, 844
BshFI	GGCC	4 cut(s)	15, 293, 419, 843
BshVI	ATCGAT	1 cut(s)	101
BsiEI	CGRYCG	2 cut(s)	137, 844
BsiHKAI	GWGCWC	1 cut(s)	656
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	6 cut(s)	11, 194, 272, 657, 844, 893
BslI	CCNNNNNNNGG	3 cut(s)	38, 817, 899
BsmAI	GTCTC	2 cut(s)	245, 623
BsnI	GGCC	4 cut(s)	15, 293, 419, 843
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	2 cut(s)	352, 656
BspACI	CCGC	6 cut(s)	45, 208, 663, 711, 870, 873
BspANI	GGCC	4 cut(s)	15, 293, 419, 843
BspCNI	CTCAG	5 cut(s)	46, 454, 472, 642, 709
BspDI	ATCGAT	1 cut(s)	101
BspFNI	CGCG	1 cut(s)	378
BspHI	TCATGA	3 cut(s)	535, 541, 772
BspLI	GGNNCC	3 cut(s)	9, 270, 335
BspMAI	CTGCAG	2 cut(s)	312, 880
BspMI	ACCTGC	3 cut(s)	214, 310, 518
BspPI	GGATC	3 cut(s)	23, 282, 651
BspQI	GCTCTTC	1 cut(s)	236
BsrBI	CCGCTC	1 cut(s)	663
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	4 cut(s)	64, 88, 314, 675
BssSI	CACGAG	1 cut(s)	701
BssT1I	CCWWGG	2 cut(s)	64, 314
Bst2BI	CACGAG	1 cut(s)	701
Bst4CI	ACNGT	1 cut(s)	344
Bst6I	CTCTTC	1 cut(s)	236
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstC8I	GCNNGC	2 cut(s)	149, 291
BstDEI	CTNAG	6 cut(s)	33, 462, 480, 626, 650, 696
BstDSI	CCRYGG	1 cut(s)	675
BstEII	GGTNACC	1 cut(s)	469
BstENI	CCTNNNNNAGG	1 cut(s)	36
BstF5I	GGATG	5 cut(s)	117, 604, 757, 829, 904
BstFNI	CGCG	1 cut(s)	378
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	2 cut(s)	207, 378
BstMAI	GTCTC	2 cut(s)	245, 623
BstMCI	CGRYCG	2 cut(s)	137, 844
BstMWI	GCNNNNNNNGC	9 cut(s)	307, 316, 373, 515, 524, 660, 840, 875, 889
BstNSI	RCATGY	1 cut(s)	58
BstPI	GGTNACC	1 cut(s)	469
BstSCI	CCNGG	2 cut(s)	10, 656
BstSFI	CTRYAG	2 cut(s)	308, 876
BstUI	CGCG	1 cut(s)	378
BstV2I	GAAGAC	2 cut(s)	287, 365
BstZI	CGGCCG	1 cut(s)	841
Bsu15I	ATCGAT	1 cut(s)	101
BsuRI	GGCC	4 cut(s)	15, 293, 419, 843
BsuTUI	ATCGAT	1 cut(s)	101
BtgI	CCRYGG	1 cut(s)	675
BtgZI	GCGATG	1 cut(s)	849
BtsCI	GGATG	5 cut(s)	117, 604, 757, 829, 904
BtsI	GCAGTG	2 cut(s)	784, 885
BtsIMutI	CAGTG	2 cut(s)	784, 885
BveI	ACCTGC	3 cut(s)	214, 310, 518
Cac8I	GCNNGC	2 cut(s)	149, 291
CciI	TCATGA	3 cut(s)	535, 541, 772
CfoI	GCGC	2 cut(s)	207, 378
Cfr13I	GGNCC	2 cut(s)	13, 927
ClaI	ATCGAT	1 cut(s)	101
CseI	GACGC	2 cut(s)	292, 387
Csp6I	GTAC	1 cut(s)	163
CspCI	CAANNNNNGTGG	2 cut(s)	303, 338
CviAII	CATG	5 cut(s)	55, 536, 542, 773, 790
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	6 cut(s)	33, 462, 480, 626, 650, 696
EaeI	YGGCCR	3 cut(s)	291, 417, 841
EagI	CGGCCG	1 cut(s)	841
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Ecl136II	GAGCTC	1 cut(s)	654
EclXI	CGGCCG	1 cut(s)	841
Eco130I	CCWWGG	2 cut(s)	64, 314
Eco24I	GRGCYC	2 cut(s)	352, 656
Eco47I	GGWCC	1 cut(s)	927
Eco52I	CGGCCG	1 cut(s)	841
Eco53kI	GAGCTC	1 cut(s)	654
Eco88I	CYCGRG	1 cut(s)	371
Eco91I	GGTNACC	1 cut(s)	469
EcoICRI	GAGCTC	1 cut(s)	654
EcoNI	CCTNNNNNAGG	1 cut(s)	36
EcoO65I	GGTNACC	1 cut(s)	469
EcoT14I	CCWWGG	2 cut(s)	64, 314
EcoT38I	GRGCYC	2 cut(s)	352, 656
ErhI	CCWWGG	2 cut(s)	64, 314
FaeI	CATG	5 cut(s)	58, 539, 545, 776, 793
FatI	CATG	5 cut(s)	54, 535, 541, 772, 789
FbaI	TGATCA	6 cut(s)	76, 532, 538, 591, 754, 778
FokI	GGATG	5 cut(s)	124, 611, 744, 836, 911
FriOI	GRGCYC	2 cut(s)	352, 656
FspBI	CTAG	3 cut(s)	302, 797, 931
GlaI	GCGC	2 cut(s)	206, 377
GsuI	CTGGAG	3 cut(s)	257, 287, 605
HaeII	RGCGCY	1 cut(s)	208
HaeIII	GGCC	4 cut(s)	15, 293, 419, 843
HapII	CCGG	6 cut(s)	11, 194, 272, 657, 844, 893
HgaI	GACGC	2 cut(s)	292, 387
HhaI	GCGC	2 cut(s)	207, 378
Hin1II	CATG	5 cut(s)	58, 539, 545, 776, 793
Hin6I	GCGC	2 cut(s)	205, 376
HinP1I	GCGC	2 cut(s)	205, 376
HinfI	GANTC	6 cut(s)	407, 428, 445, 616, 716, 807
HpaII	CCGG	6 cut(s)	11, 194, 272, 657, 844, 893
HphI	GGTGA	4 cut(s)	86, 463, 542, 725
Hpy166II	GTNNAC	4 cut(s)	682, 706, 745, 811
Hpy188I	TCNGA	6 cut(s)	89, 279, 450, 463, 817, 859
Hpy188III	TCNNGA	6 cut(s)	96, 337, 503, 536, 542, 773
Hpy8I	GTNNAC	4 cut(s)	682, 706, 745, 811
Hpy99I	CGWCG	1 cut(s)	185
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	1 cut(s)	741
HpyCH4V	TGCA	6 cut(s)	229, 310, 527, 789, 878, 883
HpyF10VI	GCNNNNNNNGC	9 cut(s)	307, 316, 373, 515, 524, 660, 840, 875, 889
HpyF3I	CTNAG	6 cut(s)	33, 462, 480, 626, 650, 696
HpySE526I	ACGT	1 cut(s)	741
Hsp92II	CATG	5 cut(s)	58, 539, 545, 776, 793
HspAI	GCGC	2 cut(s)	205, 376
Ksp22I	TGATCA	6 cut(s)	76, 532, 538, 591, 754, 778
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	5 cut(s)	7, 268, 515, 659, 660
LweI	GCATC	2 cut(s)	180, 238
MaeI	CTAG	3 cut(s)	302, 797, 931
MaeII	ACGT	1 cut(s)	741
MaeIII	GTNAC	4 cut(s)	469, 554, 713, 737
MbiI	CCGCTC	1 cut(s)	663
MboII	GAAGA	7 cut(s)	211, 253, 292, 370, 560, 563, 758
MhlI	GDGCHC	2 cut(s)	352, 656
MlsI	TGGCCA	2 cut(s)	293, 419
MluCI	AATT	3 cut(s)	158, 748, 847
MluNI	TGGCCA	2 cut(s)	293, 419
MlyI	GAGTC	4 cut(s)	401, 625, 710, 816
MmeI	TCCRAC	1 cut(s)	784
Mox20I	TGGCCA	2 cut(s)	293, 419
MroXI	GAANNNNTTC	1 cut(s)	851
MscI	TGGCCA	2 cut(s)	293, 419
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	2 cut(s)	540, 750
Msp20I	TGGCCA	2 cut(s)	293, 419
MspA1I	CMGCKG	3 cut(s)	289, 711, 875
MspI	CCGG	6 cut(s)	11, 194, 272, 657, 844, 893
MspR9I	CCNGG	2 cut(s)	12, 658
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	9 cut(s)	307, 316, 373, 515, 524, 660, 840, 875, 889
NciI	CCSGG	2 cut(s)	12, 658
NlaIII	CATG	5 cut(s)	58, 539, 545, 776, 793
NlaIV	GGNNCC	3 cut(s)	9, 270, 335
NmuCI	GTSAC	4 cut(s)	469, 554, 713, 737
NspI	RCATGY	1 cut(s)	58
PaeR7I	CTCGAG	1 cut(s)	371
PagI	TCATGA	3 cut(s)	535, 541, 772
PaqCI	CACCTGC	3 cut(s)	214, 310, 518
PciI	ACATGT	1 cut(s)	54
PciSI	GCTCTTC	1 cut(s)	236
PdmI	GAANNNNTTC	1 cut(s)	851
PfeI	GAWTC	2 cut(s)	428, 445
PfoI	TCCNGGA	1 cut(s)	656
Ple19I	CGATCG	1 cut(s)	137
PleI	GAGTC	4 cut(s)	401, 624, 710, 815
PpsI	GAGTC	4 cut(s)	401, 624, 710, 815
PscI	ACATGT	1 cut(s)	54
Psp124BI	GAGCTC	1 cut(s)	656
PspEI	GGTNACC	1 cut(s)	469
PspN4I	GGNNCC	3 cut(s)	9, 270, 335
PspPI	GGNCC	2 cut(s)	13, 927
PspXI	VCTCGAGB	1 cut(s)	371
PstI	CTGCAG	2 cut(s)	312, 880
PvuI	CGATCG	1 cut(s)	137
PvuII	CAGCTG	1 cut(s)	289
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	2 cut(s)	540, 750
SacI	GAGCTC	1 cut(s)	656
SapI	GCTCTTC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	603
Sau96I	GGNCC	2 cut(s)	13, 927
SchI	GAGTC	4 cut(s)	401, 625, 710, 816
ScrFI	CCNGG	2 cut(s)	12, 658
SduI	GDGCHC	2 cut(s)	352, 656
SfaNI	GCATC	2 cut(s)	180, 238
SfcI	CTRYAG	2 cut(s)	308, 876
Sfr274I	CTCGAG	1 cut(s)	371
SinI	GGWCC	1 cut(s)	927
SlaI	CTCGAG	1 cut(s)	371
SmiMI	CAYNNNNRTG	2 cut(s)	540, 750
SmlI	CTYRAG	2 cut(s)	371, 437
SmoI	CTYRAG	2 cut(s)	371, 437
Sse9I	AATT	3 cut(s)	158, 748, 847
SsiI	CCGC	6 cut(s)	45, 208, 663, 711, 870, 873
SspI	AATATT	1 cut(s)	176
SspMI	CTAG	3 cut(s)	302, 797, 931
SstI	GAGCTC	1 cut(s)	656
StyD4I	CCNGG	2 cut(s)	10, 656
StyI	CCWWGG	2 cut(s)	64, 314
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	1 cut(s)	744
TaqI	TCGA	5 cut(s)	95, 101, 125, 352, 372
TasI	AATT	3 cut(s)	158, 748, 847
TauI	GCSGC	3 cut(s)	210, 872, 875
TfiI	GAWTC	2 cut(s)	428, 445
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	2 cut(s)	791, 885
TseFI	GTSAC	4 cut(s)	469, 554, 713, 737
Tsp45I	GTSAC	4 cut(s)	469, 554, 713, 737
TspDTI	ATGAA	2 cut(s)	171, 554
TspGWI	ACGGA	1 cut(s)	611
TspRI	CASTG	2 cut(s)	791, 885
VpaK11BI	GGWCC	1 cut(s)	927
XagI	CCTNNNNNAGG	1 cut(s)	36
XceI	RCATGY	1 cut(s)	58
XhoI	CTCGAG	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	851
XspI	CTAG	3 cut(s)	302, 797, 931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.