Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008725

Physical Location & Seq

Genomic Coordinates Reverse (-)

17146419 .. 17146883

Gene Structure 465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1196700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTTGTTCCTCGGGAATCCTGATCACGTTTTTCGAGGGCCAAGATCGATGATGGGATTGATGGATCAGGAGAGCTCACGAAGGCGACCTTTTTTCAGCTCCTCCTCGTCGCAGGACGAACTGTTCGACGAGGAATACTACGACGAGCAGCTGCCGGAGAAGAAGCGCCGCCTCACTCCTGACCAGGTGCATATGCTGGAGAAGAGCTTTGAGACAGAGAACAAGTTGGAGCTGGAGCGAAAGACGCAGCTGGCCAAGAAGCTAGGACTACAGCCAAGACAGGTGGCCGTGTGGTTCCAGAACCGCCGCGCTCGGTGGAAGACCAAGCAGCTCGAGCGGGATTACGACCTTCTCAAGTCTTCCTATGACACCCTTTTGTCTGATTACGACTCCATCCTCAAGGAGAATCAGAAGCTCAAATCCCAGGTGGTTTCCATAAACAAGAAGCTTGGAGGTAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

155

Amino Acids

18.33

Weight (kDa)

9.46

Isoelectric Point (pI)

67.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	54 - 107	3e-19	Homeodomain
HALZ	PF02183	109 - 150	2.8e-17	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20280 AT1G61200 AT3G01470
fragaria_vesca	FvH4_6g50570
malus_domestica	MD09G1035100.v1.1 MD13G1014900.v1.1 MD13G1196700.v1.1 MD17G1035400.v1.1
prunus_persica	Prupe.3G283200_v2.0.a1
pyrus_communis	pycom111g02800 pycom17g03260
rosa_chinensis	RchiOBHm_Chr2g0171091
rosa_laevigata	RLG00000022002
rosa_multiflora	Rmu_sc0004565.1_g000009 Rmu_sc0007623.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080820
rosa_rugosa	Rorug02G0553600
rosa_samantha	Rh2AG627200 Rh2BG637100 Rh2CG606100 Rh2DG648700 Rh2DG654300
rosa_wichuraiana	Rw2G051910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	337
AccII	CGCG	1 cut(s)	309
AciI	CCGC	4 cut(s)	169, 304, 307, 337
AclWI	GGATC	1 cut(s)	72
AcoI	YGGCCR	2 cut(s)	252, 285
AjnI	CCWGG	2 cut(s)	183, 423
AloI	GAACNNNNNNTCC	2 cut(s)	107, 139
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	72
Ama87I	CYCGRG	2 cut(s)	11, 332
AoxI	GGCC	3 cut(s)	38, 252, 285
ApeKI	GCWGC	4 cut(s)	148, 151, 247, 328
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AspLEI	GCGC	2 cut(s)	168, 311
AspS9I	GGNCC	1 cut(s)	38
AvaI	CYCGRG	2 cut(s)	11, 332
BalI	TGGCCA	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	77
BbsI	GAAGAC	2 cut(s)	326, 351
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	4 cut(s)	138, 160, 259, 340
BccI	CCATC	3 cut(s)	46, 55, 401
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	2 cut(s)	185, 425
BclI	TGATCA	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	1 cut(s)	263
BfmI	CTRYAG	1 cut(s)	269
BfoI	RGCGCY	1 cut(s)	169
BisI	GCNGC	6 cut(s)	149, 152, 169, 248, 307, 329
BlsI	GCNGC	6 cut(s)	150, 153, 170, 249, 308, 330
Bme1390I	CCNGG	2 cut(s)	185, 425
BmeT110I	CYCGRG	2 cut(s)	11, 332
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	296
BmrFI	CCNGG	2 cut(s)	185, 425
BpiI	GAAGAC	2 cut(s)	326, 351
BpmI	CTGGAG	2 cut(s)	218, 254
BpuEI	CTTGAG	2 cut(s)	338, 383
Bsa29I	ATCGAT	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	10, 423
BseBI	CCWGG	2 cut(s)	185, 425
BseCI	ATCGAT	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	10, 423
BseGI	GGATG	1 cut(s)	393
BseRI	GAGGAG	2 cut(s)	91, 94
BseXI	GCAGC	4 cut(s)	138, 160, 259, 340
Bsh1236I	CGCG	1 cut(s)	309
BshFI	GGCC	3 cut(s)	40, 254, 287
BshVI	ATCGAT	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	77
BsiHKCI	CYCGRG	2 cut(s)	11, 332
BsiSI	CCGG	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	206
BsnI	GGCC	3 cut(s)	40, 254, 287
BsoBI	CYCGRG	2 cut(s)	11, 332
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	3 cut(s)	22, 44, 64
BspACI	CCGC	4 cut(s)	169, 304, 307, 337
BspANI	GGCC	3 cut(s)	40, 254, 287
BspDI	ATCGAT	1 cut(s)	47
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	1 cut(s)	296
BspPI	GGATC	1 cut(s)	72
BspQI	GCTCTTC	1 cut(s)	197
BsrBI	CCGCTC	1 cut(s)	337
BssECI	CCNNGG	2 cut(s)	10, 423
BssMI	GATC	3 cut(s)	22, 44, 64
Bst2UI	CCWGG	2 cut(s)	185, 425
Bst4CI	ACNGT	1 cut(s)	123
Bst6I	CTCTTC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	393
BstFNI	CGCG	1 cut(s)	309
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	2 cut(s)	168, 311
BstKTI	GATC	3 cut(s)	25, 47, 67
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	3 cut(s)	22, 44, 64
BstMWI	GCNNNNNNNGC	2 cut(s)	244, 334
BstNI	CCWGG	2 cut(s)	185, 425
BstSCI	CCNGG	2 cut(s)	183, 423
BstSFI	CTRYAG	1 cut(s)	269
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	4 cut(s)	138, 160, 259, 340
BstV2I	GAAGAC	2 cut(s)	326, 351
Bsu15I	ATCGAT	1 cut(s)	47
BsuRI	GGCC	3 cut(s)	40, 254, 287
BsuTUI	ATCGAT	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	393
Cac8I	GCNNGC	1 cut(s)	252
CfoI	GCGC	2 cut(s)	168, 311
Cfr13I	GGNCC	1 cut(s)	38
ClaI	ATCGAT	1 cut(s)	47
CseI	GACGC	1 cut(s)	253
CsiI	ACCWGGT	1 cut(s)	183
CspCI	CAANNNNNGTGG	2 cut(s)	264, 299
DpnI	GATC	3 cut(s)	24, 46, 66
DpnII	GATC	3 cut(s)	22, 44, 64
EaeI	YGGCCR	2 cut(s)	252, 285
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Ecl136II	GAGCTC	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	75
Eco88I	CYCGRG	2 cut(s)	11, 332
EcoICRI	GAGCTC	1 cut(s)	75
EcoRII	CCWGG	2 cut(s)	183, 423
EcoT38I	GRGCYC	1 cut(s)	77
FaiI	YATR	4 cut(s)	192, 194, 366, 437
FalI	AAGNNNNNCTT	2 cut(s)	73, 105
FauI	CCCGC	1 cut(s)	330
FauNDI	CATATG	1 cut(s)	192
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	6 cut(s)	149, 152, 169, 248, 307, 329
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	6 cut(s)	149, 152, 169, 248, 307, 329
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	2 cut(s)	167, 310
GluI	GCNGC	6 cut(s)	149, 152, 169, 248, 307, 329
GsuI	CTGGAG	2 cut(s)	218, 254
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	3 cut(s)	40, 254, 287
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	1 cut(s)	253
HhaI	GCGC	2 cut(s)	168, 311
Hin6I	GCGC	2 cut(s)	166, 309
HinP1I	GCGC	2 cut(s)	166, 309
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	3 cut(s)	16, 389, 406
HpaII	CCGG	1 cut(s)	155
Hpy188I	TCNGA	2 cut(s)	382, 411
Hpy188III	TCNNGA	6 cut(s)	13, 20, 68, 78, 179, 298
Hpy99I	CGWCG	3 cut(s)	112, 131, 146
HpyAV	CCTTC	2 cut(s)	75, 359
HpyCH4III	ACNGT	1 cut(s)	123
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	2 cut(s)	244, 334
HpySE526I	ACGT	1 cut(s)	27
HspAI	GCGC	2 cut(s)	166, 309
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	3 cut(s)	22, 44, 64
LguI	GCTCTTC	1 cut(s)	197
LmnI	GCTCC	3 cut(s)	104, 229, 235
Lsp1109I	GCAGC	4 cut(s)	138, 160, 259, 340
MabI	ACCWGGT	1 cut(s)	183
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	1 cut(s)	27
MalI	GATC	3 cut(s)	24, 46, 66
MbiI	CCGCTC	1 cut(s)	337
MboI	GATC	3 cut(s)	22, 44, 64
MboII	GAAGA	4 cut(s)	172, 214, 331, 351
MhlI	GDGCHC	1 cut(s)	77
MlsI	TGGCCA	1 cut(s)	254
MluNI	TGGCCA	1 cut(s)	254
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	8 cut(s)	20, 29, 112, 115, 124, 182, 407, 446
Mox20I	TGGCCA	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	254
Msp20I	TGGCCA	1 cut(s)	254
MspA1I	CMGCKG	2 cut(s)	151, 250
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	2 cut(s)	185, 425
MvaI	CCWGG	2 cut(s)	185, 425
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	244, 334
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	3 cut(s)	22, 44, 64
NlaIV	GGNNCC	1 cut(s)	296
PaeR7I	CTCGAG	1 cut(s)	332
PciSI	GCTCTTC	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	16, 406
PkrI	GCNGC	6 cut(s)	150, 153, 170, 249, 308, 330
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
Psp124BI	GAGCTC	1 cut(s)	77
Psp6I	CCWGG	2 cut(s)	183, 423
PspGI	CCWGG	2 cut(s)	183, 423
PspN4I	GGNNCC	1 cut(s)	296
PspPI	GGNCC	1 cut(s)	38
PspXI	VCTCGAGB	1 cut(s)	332
PvuII	CAGCTG	2 cut(s)	151, 250
SacI	GAGCTC	1 cut(s)	77
SapI	GCTCTTC	1 cut(s)	197
SatI	GCNGC	6 cut(s)	149, 152, 169, 248, 307, 329
Sau3AI	GATC	3 cut(s)	22, 44, 64
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	2 cut(s)	185, 425
SduI	GDGCHC	1 cut(s)	77
SexAI	ACCWGGT	1 cut(s)	183
SfcI	CTRYAG	1 cut(s)	269
Sfr274I	CTCGAG	1 cut(s)	332
SlaI	CTCGAG	1 cut(s)	332
SmlI	CTYRAG	3 cut(s)	332, 353, 398
SmoI	CTYRAG	3 cut(s)	332, 353, 398
SsiI	CCGC	4 cut(s)	169, 304, 307, 337
SspMI	CTAG	1 cut(s)	263
SstI	GAGCTC	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	183, 423
TaaI	ACNGT	1 cut(s)	123
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	4 cut(s)	34, 47, 126, 333
TauI	GCSGC	2 cut(s)	171, 309
TfiI	GAWTC	2 cut(s)	16, 406
TseI	GCWGC	4 cut(s)	148, 151, 247, 328
XhoI	CTCGAG	1 cut(s)	332
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.