Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005842

Physical Location & Seq

Genomic Coordinates Forward (+)

205314 .. 208220

Gene Structure 2907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01516.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGAGGAGGAAAACCAAAAGTCGCATCGAGTTTCACGTAAAGACCAGAGTGGATCCCACTGGAGTCAAGGAGCCGATGAAGAGCCGAGAGCCAGATGCTCCGGGAAAAGGTGCCGGTCTTGGGCGGCGGCGGCGATCGCTGACTGCGTGGCGCTCTGCTGTTGTCCCTGCGCCGTGGTGAACATCTTCACTCTCGCCTTTGTTAAGGTCCCGTGGATGATAGGCCGGAAATGTATCGGCCGTGGTGGCCCGAGTAAGAAGCGGATGAAGAAAATCAACCGTGAGGATCGGTTTCATCACCATCACCACCACAGGAGGTCGGCCGAGATGGTGAGTGGTGGATGTTGCGGTGGCGGAGATGGAGATGGAGAGTTCGATGACCATCGGTTTGTGGTGGAAAGAGACGGGAGTTTGACCAAAGAGGAAGCCAAAACGGCGTCGTTAAAAGAAGAGGAAGAGACGAGAATAAGTGCGAGAGTGGAAGCAGAGAGAGTTTGGTTAGAGTTGTATCAGATTGGGCATCTTGGCTTTGGTAGAGTCTCCTTCACTGGCATTCATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

21.02

Weight (kDa)

8.55

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01516 AT3G01516 AT5G14690 AT5G14690
fragaria_vesca	FvH4_6g50860
malus_domestica	MD09G1031300.v1.1 MD17G1033200.v1.1
prunus_persica	Prupe.3G286300_v2.0.a1
pyrus_communis	pycom111g02500
rosa_chinensis	RchiOBHm_Chr2g0172251
rosa_laevigata	RLG00000014670
rosa_multiflora	Rmu_sc0009513.1_g000004 Rmu_sc0024549.1_g000007 Rmu_sc0041056.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080030 Rroxscaffold_2G00082460
rosa_rugosa	Rorug02G0558100
rosa_samantha	Rh2CG613700 Rh2DG661600 Rh4DG100700 Rh5AG268800 Rh5AG346300 Rh5BG357000 Rh5DG372400 Rh7AG115100 Rh7CG120300
rosa_wichuraiana	Rw2G052420 Rw5G032700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	111
AciI	CCGC	6 cut(s)	125, 128, 131, 262, 348, 354
AclWI	GGATC	3 cut(s)	48, 61, 294
AcoI	YGGCCR	2 cut(s)	238, 321
AcyI	GRCGYC	1 cut(s)	437
AfiI	CCNNNNNNNGG	2 cut(s)	108, 121
Alw26I	GTCTC	3 cut(s)	396, 452, 544
AlwI	GGATC	3 cut(s)	48, 61, 294
Ama87I	CYCGRG	1 cut(s)	250
AoxI	GGCC	4 cut(s)	223, 238, 247, 321
ArsI	GACNNNNNNTTYG	2 cut(s)	371, 403
AsiSI	GCGATCGC	1 cut(s)	138
Asp700I	GAANNNNTTC	1 cut(s)	185
AspLEI	GCGC	2 cut(s)	154, 173
AspS9I	GGNCC	2 cut(s)	208, 248
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	4 cut(s)	190, 290, 296, 343
AvaI	CYCGRG	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	208
BamHI	GGATCC	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	111
BccI	CCATC	5 cut(s)	309, 322, 353, 359, 390
BceAI	ACGGC	3 cut(s)	158, 225, 450
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	3 cut(s)	396, 452, 544
BfoI	RGCGCY	1 cut(s)	155
BglI	GCCNNNNNGGC	2 cut(s)	246, 434
BisI	GCNGC	3 cut(s)	126, 129, 132
BlsI	GCNGC	3 cut(s)	127, 130, 133
Bme1390I	CCNGG	1 cut(s)	103
Bme18I	GGWCC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	250
BmgT120I	GGNCC	2 cut(s)	208, 248
BmiI	GGNNCC	4 cut(s)	55, 73, 113, 210
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	3 cut(s)	34, 86, 529
BpmI	CTGGAG	1 cut(s)	82
BpuMI	CCSGG	1 cut(s)	103
BsaAI	YACGTR	1 cut(s)	38
BsaBI	GATNNNNATC	1 cut(s)	381
BsaHI	GRCGYC	1 cut(s)	437
BsaJI	CCNNGG	3 cut(s)	174, 212, 241
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 121
Bse118I	RCCGGY	1 cut(s)	114
Bse1I	ACTGG	2 cut(s)	65, 553
Bse8I	GATNNNNATC	1 cut(s)	381
BseDI	CCNNGG	3 cut(s)	174, 212, 241
BseGI	GGATG	3 cut(s)	222, 270, 347
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	2 cut(s)	108, 121
BseNI	ACTGG	2 cut(s)	65, 553
BseRI	GAGGAG	1 cut(s)	20
BseX3I	CGGCCG	2 cut(s)	238, 321
Bsh1285I	CGRYCG	3 cut(s)	138, 241, 324
BshFI	GGCC	4 cut(s)	225, 240, 249, 323
BshNI	GGYRCC	1 cut(s)	111
BsiEI	CGRYCG	3 cut(s)	138, 241, 324
BsiHKCI	CYCGRG	1 cut(s)	250
BsiSI	CCGG	3 cut(s)	102, 115, 226
BslFI	GGGAC	2 cut(s)	150, 194
BslI	CCNNNNNNNGG	2 cut(s)	108, 121
BsmAI	GTCTC	3 cut(s)	396, 452, 544
BsmBI	CGTCTC	2 cut(s)	396, 452
BsmFI	GGGAC	2 cut(s)	150, 194
BsmI	GAATGC	1 cut(s)	552
BsnI	GGCC	4 cut(s)	225, 240, 249, 323
BsoBI	CYCGRG	1 cut(s)	250
Bsp143I	GATC	3 cut(s)	53, 135, 286
BspACI	CCGC	6 cut(s)	125, 128, 131, 262, 348, 354
BspANI	GGCC	4 cut(s)	225, 240, 249, 323
BspLI	GGNNCC	4 cut(s)	55, 73, 113, 210
BspPI	GGATC	3 cut(s)	48, 61, 294
BspQI	GCTCTTC	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	111
BsrFI	RCCGGY	1 cut(s)	114
BsrI	ACTGG	2 cut(s)	65, 553
BssAI	RCCGGY	1 cut(s)	114
BssECI	CCNNGG	3 cut(s)	174, 212, 241
BssMI	GATC	3 cut(s)	53, 135, 286
BssNI	GRCGYC	1 cut(s)	437
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	3 cut(s)	75, 444, 450
BstACI	GRCGYC	1 cut(s)	437
BstBAI	YACGTR	1 cut(s)	38
BstDSI	CCRYGG	3 cut(s)	174, 212, 241
BstF5I	GGATG	3 cut(s)	222, 270, 347
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	2 cut(s)	154, 173
BstKTI	GATC	3 cut(s)	56, 138, 289
BstMAI	GTCTC	3 cut(s)	396, 452, 544
BstMBI	GATC	3 cut(s)	53, 135, 286
BstMCI	CGRYCG	3 cut(s)	138, 241, 324
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 137, 246, 434
BstSCI	CCNGG	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BstZI	CGGCCG	2 cut(s)	238, 321
BsuRI	GGCC	4 cut(s)	225, 240, 249, 323
BtgI	CCRYGG	3 cut(s)	174, 212, 241
BtsCI	GGATG	3 cut(s)	222, 270, 347
BtsIMutI	CAGTG	2 cut(s)	58, 546
CfoI	GCGC	2 cut(s)	154, 173
Cfr10I	RCCGGY	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	208, 248
CseI	GACGC	1 cut(s)	426
CviJI	RGCY	9 cut(s)	74, 85, 92, 225, 240, 249, 323, 428, 528
CviKI_1	RGCY	9 cut(s)	74, 85, 92, 225, 240, 249, 323, 428, 528
DpnI	GATC	3 cut(s)	55, 137, 288
DpnII	GATC	3 cut(s)	53, 135, 286
EaeI	YGGCCR	2 cut(s)	238, 321
EagI	CGGCCG	2 cut(s)	238, 321
Eam1104I	CTCTTC	3 cut(s)	75, 444, 450
EarI	CTCTTC	3 cut(s)	75, 444, 450
EciI	GGCGGA	1 cut(s)	369
EclXI	CGGCCG	2 cut(s)	238, 321
Eco47I	GGWCC	1 cut(s)	208
Eco52I	CGGCCG	2 cut(s)	238, 321
Eco88I	CYCGRG	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	208
Esp3I	CGTCTC	2 cut(s)	396, 452
FaqI	GGGAC	2 cut(s)	150, 194
Fnu4HI	GCNGC	3 cut(s)	126, 129, 132
FokI	GGATG	3 cut(s)	229, 277, 354
Fsp4HI	GCNGC	3 cut(s)	126, 129, 132
GlaI	GCGC	2 cut(s)	153, 172
GluI	GCNGC	3 cut(s)	126, 129, 132
GsuI	CTGGAG	1 cut(s)	82
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	4 cut(s)	225, 240, 249, 323
HapII	CCGG	3 cut(s)	102, 115, 226
HgaI	GACGC	1 cut(s)	426
HhaI	GCGC	2 cut(s)	154, 173
Hin1I	GRCGYC	1 cut(s)	437
Hin6I	GCGC	2 cut(s)	152, 171
HinP1I	GCGC	2 cut(s)	152, 171
HinfI	GANTC	2 cut(s)	64, 537
HpaII	CCGG	3 cut(s)	102, 115, 226
HphI	GGTGA	4 cut(s)	190, 290, 296, 343
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	1 cut(s)	513
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	442
HpyAV	CCTTC	1 cut(s)	553
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4IV	ACGT	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 137, 246, 434
HpySE526I	ACGT	1 cut(s)	37
Hsp92I	GRCGYC	1 cut(s)	437
HspAI	GCGC	2 cut(s)	152, 171
Kzo9I	GATC	3 cut(s)	53, 135, 286
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	2 cut(s)	71, 104
LpnPI	CCDG	9 cut(s)	46, 59, 106, 115, 128, 181, 239, 298, 534
LweI	GCATC	3 cut(s)	34, 86, 529
MaeII	ACGT	1 cut(s)	37
MalI	GATC	3 cut(s)	55, 137, 288
MboI	GATC	3 cut(s)	53, 135, 286
MboII	GAAGA	5 cut(s)	92, 178, 280, 461, 467
MflI	RGATCY	1 cut(s)	53
MlyI	GAGTC	2 cut(s)	73, 546
MnlI	CCTC	4 cut(s)	277, 309, 415, 445
MroXI	GAANNNNTTC	1 cut(s)	185
MseI	TTAA	2 cut(s)	204, 443
MspI	CCGG	3 cut(s)	102, 115, 226
MspR9I	CCNGG	1 cut(s)	103
Mva1269I	GAATGC	1 cut(s)	552
MwoI	GCNNNNNNNGC	4 cut(s)	131, 137, 246, 434
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	3 cut(s)	53, 135, 286
NlaIV	GGNNCC	4 cut(s)	55, 73, 113, 210
NmeAIII	GCCGAG	2 cut(s)	111, 349
PciSI	GCTCTTC	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	2 cut(s)	34, 144
PctI	GAATGC	1 cut(s)	552
PdmI	GAANNNNTTC	1 cut(s)	185
PfoI	TCCNGGA	1 cut(s)	101
PkrI	GCNGC	3 cut(s)	127, 130, 133
Ple19I	CGATCG	1 cut(s)	138
PleI	GAGTC	2 cut(s)	72, 545
PpsI	GAGTC	2 cut(s)	72, 545
Ppu21I	YACGTR	1 cut(s)	38
PpuMI	RGGWCCY	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	208
PspN4I	GGNNCC	4 cut(s)	55, 73, 113, 210
PspPI	GGNCC	2 cut(s)	208, 248
PspPPI	RGGWCCY	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	53
PvuI	CGATCG	1 cut(s)	138
RgaI	GCGATCGC	1 cut(s)	138
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	204, 443
SatI	GCNGC	3 cut(s)	126, 129, 132
Sau3AI	GATC	3 cut(s)	53, 135, 286
Sau96I	GGNCC	2 cut(s)	208, 248
SchI	GAGTC	2 cut(s)	73, 546
ScrFI	CCNGG	1 cut(s)	103
SetI	ASST	4 cut(s)	40, 113, 210, 320
SfaAI	GCGATCGC	1 cut(s)	138
SfaNI	GCATC	3 cut(s)	34, 86, 529
SfiI	GGCCNNNNNGGCC	1 cut(s)	246
SgfI	GCGATCGC	1 cut(s)	138
SinI	GGWCC	1 cut(s)	208
SsiI	CCGC	6 cut(s)	125, 128, 131, 262, 348, 354
StyD4I	CCNGG	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	281
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	2 cut(s)	28, 375
TauI	GCSGC	3 cut(s)	128, 131, 134
Tru1I	TTAA	2 cut(s)	204, 443
Tru9I	TTAA	2 cut(s)	204, 443
TscAI	CASTG	2 cut(s)	65, 553
TspDTI	ATGAA	4 cut(s)	93, 281, 284, 545
TspRI	CASTG	2 cut(s)	65, 553
VpaK11BI	GGWCC	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.