Rmu_sc0009513.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009513.1
OG0005842
Physical Location & Seq
Forward (+)
32978 .. 33304
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009513.1_g000004.1.cds

Sequence Viewer

Length: 327 bp
atgggtcaccaaagcctgactccggtgccacgtaaacaccactcaccagactcgagttcattggacggcgccgccgcaatcagcagagcgaagaagagatgctacctagtagactaccgcgccagcggtgatagggtcgagtgctccggcaagtactgccgatcatgcagcgccgacatgatcgccgattgcgtggagctgtgctgctgcccttgcgctctggtcaacctgttgactctggccttcgtgaaagtgtcgtggatggttgggaggaagtgcttggggttacgcaagaacaagaagaaggaaaaccagagccaggggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.84

Weight (kDa)

9.21

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 25, 68
AccI GTMKAC 1 cut(s) 111
AccII CGCG 1 cut(s) 120
AciI CCGC 4 cut(s) 72, 75, 118, 126
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 2 cut(s) 22, 319
AjnI CCWGG 1 cut(s) 318
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw21I GWGCWC 1 cut(s) 146
Ama87I CYCGRG 1 cut(s) 52
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 3 cut(s) 168, 204, 207
AspLEI GCGC 4 cut(s) 71, 122, 173, 218
AsuHPI GGTGA 2 cut(s) 36, 140
AvaI CYCGRG 1 cut(s) 52
BanI GGYRCC 2 cut(s) 25, 68
BarI GAAGNNNNNNTAC 2 cut(s) 86, 118
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 3 cut(s) 180, 191, 194
BccI CCATC 1 cut(s) 256
BceAI ACGGC 1 cut(s) 82
BciT130I CCWGG 1 cut(s) 320
BfaI CTAG 1 cut(s) 107
BfoI RGCGCY 2 cut(s) 72, 174
BisI GCNGC 5 cut(s) 72, 75, 169, 205, 208
BlsI GCNGC 5 cut(s) 73, 76, 170, 206, 209
BmcAI AGTACT 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 320
BmeT110I CYCGRG 1 cut(s) 52
BmiI GGNNCC 2 cut(s) 27, 70
BmrFI CCNGG 1 cut(s) 320
BmsI GCATC 1 cut(s) 89
BsaAI YACGTR 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 319
BsaWI WCCGGW 1 cut(s) 22
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 319
BseBI CCWGG 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 319
BseGI GGATG 1 cut(s) 267
BseLI CCNNNNNNNGG 2 cut(s) 22, 319
BseXI GCAGC 3 cut(s) 180, 191, 194
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 242
BshNI GGYRCC 2 cut(s) 25, 68
BsiHKAI GWGCWC 1 cut(s) 146
BsiHKCI CYCGRG 1 cut(s) 52
BsiSI CCGG 2 cut(s) 23, 147
BslI CCNNNNNNNGG 2 cut(s) 22, 319
BsnI GGCC 1 cut(s) 242
BsoBI CYCGRG 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 2 cut(s) 161, 180
BspACI CCGC 4 cut(s) 72, 75, 118, 126
BspANI GGCC 1 cut(s) 242
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 27, 70
BspT107I GGYRCC 2 cut(s) 25, 68
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 2 cut(s) 161, 180
BssNI GRCGYC 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 89
BstACI GRCGYC 1 cut(s) 69
BstAPI GCANNNNNTGC 1 cut(s) 156
BstBAI YACGTR 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 124
BstEII GGTNACC 1 cut(s) 5
BstF5I GGATG 1 cut(s) 267
BstFNI CGCG 1 cut(s) 120
BstH2I RGCGCY 2 cut(s) 72, 174
BstHHI GCGC 4 cut(s) 71, 122, 173, 218
BstKTI GATC 2 cut(s) 164, 183
BstMBI GATC 2 cut(s) 161, 180
BstMWI GCNNNNNNNGC 3 cut(s) 156, 165, 213
BstNI CCWGG 1 cut(s) 320
BstPI GGTNACC 1 cut(s) 5
BstSCI CCNGG 1 cut(s) 318
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 3 cut(s) 180, 191, 194
BsuRI GGCC 1 cut(s) 242
BtsCI GGATG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 124
CfoI GCGC 4 cut(s) 71, 122, 173, 218
Csp6I GTAC 1 cut(s) 154
CviAII CATG 2 cut(s) 165, 178
CviJI RGCY 4 cut(s) 15, 199, 242, 318
CviKI_1 RGCY 4 cut(s) 15, 199, 242, 318
CviQI GTAC 1 cut(s) 154
DinI GGCGCC 1 cut(s) 70
DpnI GATC 2 cut(s) 163, 182
DpnII GATC 2 cut(s) 161, 180
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 52
Eco91I GGTNACC 1 cut(s) 5
EcoO65I GGTNACC 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 318
EgeI GGCGCC 1 cut(s) 70
EheI GGCGCC 1 cut(s) 70
FaeI CATG 2 cut(s) 168, 181
FaiI YATR 2 cut(s) 166, 179
FatI CATG 2 cut(s) 164, 177
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 5 cut(s) 72, 75, 169, 205, 208
FokI GGATG 1 cut(s) 274
Fsp4HI GCNGC 5 cut(s) 72, 75, 169, 205, 208
FspBI CTAG 1 cut(s) 107
GlaI GCGC 4 cut(s) 70, 121, 172, 217
GluI GCNGC 5 cut(s) 72, 75, 169, 205, 208
HaeII RGCGCY 2 cut(s) 72, 174
HaeIII GGCC 1 cut(s) 242
HapII CCGG 2 cut(s) 23, 147
HhaI GCGC 4 cut(s) 71, 122, 173, 218
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 2 cut(s) 168, 181
Hin6I GCGC 4 cut(s) 69, 120, 171, 216
HinP1I GCGC 4 cut(s) 69, 120, 171, 216
HincII GTYRAC 2 cut(s) 226, 234
HindII GTYRAC 2 cut(s) 226, 234
HinfI GANTC 3 cut(s) 19, 50, 235
HpaII CCGG 2 cut(s) 23, 147
HphI GGTGA 2 cut(s) 36, 140
Hpy166II GTNNAC 4 cut(s) 35, 112, 226, 234
Hpy188III TCNNGA 1 cut(s) 247
Hpy8I GTNNAC 4 cut(s) 35, 112, 226, 234
HpyAV CCTTC 2 cut(s) 253, 298
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 1 cut(s) 168
HpyF10VI GCNNNNNNNGC 3 cut(s) 156, 165, 213
HpySE526I ACGT 1 cut(s) 31
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 2 cut(s) 168, 181
HspAI GCGC 4 cut(s) 69, 120, 171, 216
KasI GGCGCC 1 cut(s) 68
Kzo9I GATC 2 cut(s) 161, 180
LmnI GCTCC 2 cut(s) 149, 196
LpnPI CCDG 9 cut(s) 29, 36, 60, 136, 160, 206, 224, 242, 305
Lsp1109I GCAGC 3 cut(s) 180, 191, 194
LweI GCATC 1 cut(s) 89
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 31
MaeIII GTNAC 2 cut(s) 5, 285
MalI GATC 2 cut(s) 163, 182
MboI GATC 2 cut(s) 161, 180
MboII GAAGA 3 cut(s) 103, 106, 313
MhlI GDGCHC 1 cut(s) 146
Mly113I GGCGCC 1 cut(s) 69
MlyI GAGTC 3 cut(s) 13, 44, 229
MnlI CCTC 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 126
MspI CCGG 2 cut(s) 23, 147
MspR9I CCNGG 1 cut(s) 320
MvaI CCWGG 1 cut(s) 320
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 3 cut(s) 156, 165, 213
NarI GGCGCC 1 cut(s) 69
NdeII GATC 2 cut(s) 161, 180
NlaIII CATG 2 cut(s) 168, 181
NlaIV GGNNCC 2 cut(s) 27, 70
NmuCI GTSAC 1 cut(s) 5
PaeR7I CTCGAG 1 cut(s) 52
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PkrI GCNGC 5 cut(s) 73, 76, 170, 206, 209
PleI GAGTC 3 cut(s) 13, 44, 229
PluTI GGCGCC 1 cut(s) 72
PpsI GAGTC 3 cut(s) 13, 44, 229
Ppu21I YACGTR 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 318
PspEI GGTNACC 1 cut(s) 5
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 2 cut(s) 27, 70
PspXI VCTCGAGB 1 cut(s) 52
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SatI GCNGC 5 cut(s) 72, 75, 169, 205, 208
Sau3AI GATC 2 cut(s) 161, 180
ScaI AGTACT 1 cut(s) 155
SchI GAGTC 3 cut(s) 13, 44, 229
ScrFI CCNGG 1 cut(s) 320
SduI GDGCHC 1 cut(s) 146
SetI ASST 4 cut(s) 34, 108, 201, 231
SfaNI GCATC 1 cut(s) 89
SfoI GGCGCC 1 cut(s) 70
Sfr274I CTCGAG 1 cut(s) 52
SlaI CTCGAG 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SsiI CCGC 4 cut(s) 72, 75, 118, 126
SspDI GGCGCC 1 cut(s) 68
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 318
TaiI ACGT 1 cut(s) 34
TaqI TCGA 2 cut(s) 53, 138
TatI WGTACW 1 cut(s) 153
TauI GCSGC 2 cut(s) 74, 77
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 3 cut(s) 168, 204, 207
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 48
XhoI CTCGAG 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 111
XspI CTAG 1 cut(s) 107
ZrmI AGTACT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.