Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005842

Physical Location & Seq

Genomic Coordinates Forward (+)

37802199 .. 37806299

Gene Structure 4101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGTCATCACGACAGCCCGAGTCCTCCTCTTGCGCCACGTAAGCACCACTCACCGGACTCGGCTTCCTCCGACGGTGCAGCCACCGCAATCAGCAGAGCCAAGAAGAGCCGCTACCCCGTGGACGACGACGGCGACGGCGACAGGATGGAGTGCTCCGGCAAGTACTGCCGGTCATGCAGCGCGGGCATGATCGCCGACTGCGTGGCGCTGTGCTGCTGCCCCTGCGCGCTGTTCAACCTGTTGACTTTGGCGCTGGTCAAGGTGCCGTGGATGGTGGGGAGGAGGTGTTTGGGGCTAGGCAAGAAGAACAACAAGAAGAAGCTGAGAGAGAGCCAGGGGCAGAATCGGAAATCCAAGCAAAAATGTAAGAGTAAGAAGAAGATGAAGCATTGTAGTGGTGGTGGTAGTAGTAGTCAAAGGCAGCGACGGTGCGCGGCGGAGGAGGAGTTGCCGGCGCAGATATCGGGCTACGTGTTCGGGTTTGATGATCGGGAGGAGGAAGAGGAGGAAGAGGAGGACTGTGTGAGTAGTGCAGAGAGGGTATGGCTGGAATTGTACCAGGTAGGACATTTGGGTTTTGGGAGGGTTTCCTTCGGTGGTGGGGTTGTTCAGTCTGTGCAAGGTAAGGGCAATATGGGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

23.38

Weight (kDa)

8.76

Isoelectric Point (pI)

62.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01516 AT3G01516 AT5G14690 AT5G14690
fragaria_vesca	FvH4_6g50860
malus_domestica	MD09G1031300.v1.1 MD17G1033200.v1.1
prunus_persica	Prupe.3G286300_v2.0.a1
pyrus_communis	pycom111g02500
rosa_chinensis	RchiOBHm_Chr2g0172251
rosa_laevigata	RLG00000014670
rosa_multiflora	Rmu_sc0009513.1_g000004 Rmu_sc0024549.1_g000007 Rmu_sc0041056.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080030 Rroxscaffold_2G00082460
rosa_rugosa	Rorug02G0558100
rosa_samantha	Rh2CG613700 Rh2DG661600 Rh4DG100700 Rh5AG268800 Rh5AG346300 Rh5BG357000 Rh5DG372400 Rh7AG115100 Rh7CG120300
rosa_wichuraiana	Rw2G052420 Rw5G032700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	265
AccII	CGCG	3 cut(s)	185, 230, 437
AciI	CCGC	5 cut(s)	87, 112, 185, 437, 440
AfaI	GTAC	2 cut(s)	167, 560
AfiI	CCNNNNNNNGG	1 cut(s)	55
AflIII	ACRYGT	1 cut(s)	474
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	2 cut(s)	336, 561
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
Alw21I	GWGCWC	1 cut(s)	158
Ama87I	CYCGRG	1 cut(s)	19
ApeKI	GCWGC	5 cut(s)	80, 180, 216, 219, 424
AspLEI	GCGC	8 cut(s)	37, 185, 211, 230, 232, 256, 437, 460
AsuHPI	GGTGA	1 cut(s)	45
AvaI	CYCGRG	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	265
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
Bbv12I	GWGCWC	1 cut(s)	158
BbvI	GCAGC	5 cut(s)	92, 192, 203, 206, 436
BccI	CCATC	2 cut(s)	142, 268
BceAI	ACGGC	3 cut(s)	148, 154, 253
BciT130I	CCWGG	2 cut(s)	338, 563
BfaI	CTAG	1 cut(s)	299
BfoI	RGCGCY	2 cut(s)	212, 257
BisI	GCNGC	7 cut(s)	81, 112, 181, 217, 220, 425, 438
BlsI	GCNGC	7 cut(s)	82, 113, 182, 218, 221, 426, 439
BmcAI	AGTACT	1 cut(s)	167
Bme1390I	CCNGG	2 cut(s)	338, 563
BmeT110I	CYCGRG	1 cut(s)	19
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	2 cut(s)	338, 563
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
BsaAI	YACGTR	2 cut(s)	41, 475
BsaJI	CCNNGG	3 cut(s)	120, 269, 337
BsaWI	WCCGGW	1 cut(s)	55
BsaXI	ACNNNNNCTCC	4 cut(s)	274, 304, 434, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse118I	RCCGGY	2 cut(s)	171, 454
BseBI	CCWGG	2 cut(s)	338, 563
BseDI	CCNNGG	3 cut(s)	120, 269, 337
BseGI	GGATG	2 cut(s)	153, 279
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	317
BsePI	GCGCGC	1 cut(s)	228
BseRI	GAGGAG	7 cut(s)	18, 298, 458, 461, 512, 521, 530
BseXI	GCAGC	5 cut(s)	92, 192, 203, 206, 436
BsgI	GTGCAG	2 cut(s)	99, 555
Bsh1236I	CGCG	3 cut(s)	185, 230, 437
BshNI	GGYRCC	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	19
BsiSI	CCGG	4 cut(s)	56, 159, 172, 455
BslI	CCNNNNNNNGG	1 cut(s)	55
BsoBI	CYCGRG	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	192, 490
BspACI	CCGC	5 cut(s)	87, 112, 185, 437, 440
BspCNI	CTCAG	1 cut(s)	318
BspFNI	CGCG	3 cut(s)	185, 230, 437
BspLI	GGNNCC	1 cut(s)	267
BspQI	GCTCTTC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	265
BsrFI	RCCGGY	2 cut(s)	171, 454
BssAI	RCCGGY	2 cut(s)	171, 454
BssECI	CCNNGG	3 cut(s)	120, 269, 337
BssHII	GCGCGC	1 cut(s)	228
BssMI	GATC	2 cut(s)	192, 490
Bst2UI	CCWGG	2 cut(s)	338, 563
Bst4CI	ACNGT	3 cut(s)	77, 432, 524
Bst6I	CTCTTC	3 cut(s)	101, 498, 507
BstAPI	GCANNNNNTGC	1 cut(s)	168
BstBAI	YACGTR	2 cut(s)	41, 475
BstC8I	GCNNGC	3 cut(s)	187, 230, 456
BstDEI	CTNAG	1 cut(s)	326
BstDSI	CCRYGG	2 cut(s)	120, 269
BstF5I	GGATG	2 cut(s)	153, 279
BstFNI	CGCG	3 cut(s)	185, 230, 437
BstH2I	RGCGCY	2 cut(s)	212, 257
BstHHI	GCGC	8 cut(s)	37, 185, 211, 230, 232, 256, 437, 460
BstKTI	GATC	2 cut(s)	195, 493
BstMBI	GATC	2 cut(s)	192, 490
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 86, 168, 177, 186, 225
BstNI	CCWGG	2 cut(s)	338, 563
BstSCI	CCNGG	2 cut(s)	336, 561
BstUI	CGCG	3 cut(s)	185, 230, 437
BstV1I	GCAGC	5 cut(s)	92, 192, 203, 206, 436
BtgI	CCRYGG	2 cut(s)	120, 269
BtsCI	GGATG	2 cut(s)	153, 279
Cac8I	GCNNGC	3 cut(s)	187, 230, 456
CfoI	GCGC	8 cut(s)	37, 185, 211, 230, 232, 256, 437, 460
Cfr10I	RCCGGY	2 cut(s)	171, 454
CsiI	ACCWGGT	1 cut(s)	561
Csp6I	GTAC	2 cut(s)	166, 559
CviAII	CATG	3 cut(s)	177, 190, 645
CviQI	GTAC	2 cut(s)	166, 559
DdeI	CTNAG	1 cut(s)	326
DpnI	GATC	2 cut(s)	194, 492
DpnII	GATC	2 cut(s)	192, 490
Eam1104I	CTCTTC	3 cut(s)	101, 498, 507
EarI	CTCTTC	3 cut(s)	101, 498, 507
EciI	GGCGGA	1 cut(s)	455
Eco32I	GATATC	1 cut(s)	465
Eco88I	CYCGRG	1 cut(s)	19
EcoRII	CCWGG	2 cut(s)	336, 561
EcoRV	GATATC	1 cut(s)	465
FaeI	CATG	3 cut(s)	180, 193, 648
FaiI	YATR	5 cut(s)	178, 191, 547, 638, 646
FatI	CATG	3 cut(s)	176, 189, 644
FauI	CCCGC	1 cut(s)	178
Fnu4HI	GCNGC	7 cut(s)	81, 112, 181, 217, 220, 425, 438
FokI	GGATG	2 cut(s)	160, 286
Fsp4HI	GCNGC	7 cut(s)	81, 112, 181, 217, 220, 425, 438
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	8 cut(s)	36, 184, 210, 229, 231, 255, 436, 459
GluI	GCNGC	7 cut(s)	81, 112, 181, 217, 220, 425, 438
HaeII	RGCGCY	2 cut(s)	212, 257
HapII	CCGG	4 cut(s)	56, 159, 172, 455
HhaI	GCGC	8 cut(s)	37, 185, 211, 230, 232, 256, 437, 460
Hin1II	CATG	3 cut(s)	180, 193, 648
Hin6I	GCGC	8 cut(s)	35, 183, 209, 228, 230, 254, 435, 458
HinP1I	GCGC	8 cut(s)	35, 183, 209, 228, 230, 254, 435, 458
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HinfI	GANTC	3 cut(s)	22, 59, 346
HpaII	CCGG	4 cut(s)	56, 159, 172, 455
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	2 cut(s)	124, 246
Hpy188I	TCNGA	2 cut(s)	73, 351
Hpy188III	TCNNGA	2 cut(s)	11, 494
Hpy8I	GTNNAC	2 cut(s)	124, 246
Hpy99I	CGWCG	5 cut(s)	77, 131, 134, 140, 432
HpyAV	CCTTC	1 cut(s)	604
HpyCH4III	ACNGT	3 cut(s)	77, 432, 524
HpyCH4IV	ACGT	2 cut(s)	40, 474
HpyCH4V	TGCA	4 cut(s)	80, 180, 536, 622
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 86, 168, 177, 186, 225
HpyF3I	CTNAG	1 cut(s)	326
HpySE526I	ACGT	2 cut(s)	40, 474
Hsp92II	CATG	3 cut(s)	180, 193, 648
HspAI	GCGC	8 cut(s)	35, 183, 209, 228, 230, 254, 435, 458
KroI	GCCGGC	1 cut(s)	454
KroNI	GCCGGC	1 cut(s)	456
Kzo9I	GATC	2 cut(s)	192, 490
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	5 cut(s)	92, 192, 203, 206, 436
MabI	ACCWGGT	1 cut(s)	561
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	2 cut(s)	40, 474
MalI	GATC	2 cut(s)	194, 492
MboI	GATC	2 cut(s)	192, 490
MboII	GAAGA	7 cut(s)	118, 319, 331, 391, 394, 515, 524
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	1 cut(s)	554
MlyI	GAGTC	2 cut(s)	31, 53
MmeI	TCCRAC	1 cut(s)	96
MroNI	GCCGGC	1 cut(s)	454
MslI	CAYNNNNRTG	1 cut(s)	396
MspI	CCGG	4 cut(s)	56, 159, 172, 455
MspR9I	CCNGG	2 cut(s)	338, 563
MvaI	CCWGG	2 cut(s)	338, 563
MvnI	CGCG	3 cut(s)	185, 230, 437
MwoI	GCNNNNNNNGC	6 cut(s)	43, 86, 168, 177, 186, 225
NaeI	GCCGGC	1 cut(s)	456
NdeII	GATC	2 cut(s)	192, 490
NgoMIV	GCCGGC	1 cut(s)	454
NlaIII	CATG	3 cut(s)	180, 193, 648
NlaIV	GGNNCC	1 cut(s)	267
NmeAIII	GCCGAG	1 cut(s)	41
PauI	GCGCGC	1 cut(s)	228
PciSI	GCTCTTC	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 138, 201
PdiI	GCCGGC	1 cut(s)	456
PfeI	GAWTC	1 cut(s)	346
PkrI	GCNGC	7 cut(s)	82, 113, 182, 218, 221, 426, 439
PleI	GAGTC	2 cut(s)	30, 53
PpsI	GAGTC	2 cut(s)	30, 53
Ppu21I	YACGTR	2 cut(s)	41, 475
Psp6I	CCWGG	2 cut(s)	336, 561
PspGI	CCWGG	2 cut(s)	336, 561
PspN4I	GGNNCC	1 cut(s)	267
PteI	GCGCGC	1 cut(s)	228
RsaI	GTAC	2 cut(s)	167, 560
RsaNI	GTAC	2 cut(s)	166, 559
RseI	CAYNNNNRTG	1 cut(s)	396
SapI	GCTCTTC	1 cut(s)	101
SatI	GCNGC	7 cut(s)	81, 112, 181, 217, 220, 425, 438
Sau3AI	GATC	2 cut(s)	192, 490
ScaI	AGTACT	1 cut(s)	167
SchI	GAGTC	2 cut(s)	31, 53
ScrFI	CCNGG	2 cut(s)	338, 563
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	8 cut(s)	43, 243, 267, 290, 327, 477, 567, 628
SexAI	ACCWGGT	1 cut(s)	561
SmiMI	CAYNNNNRTG	1 cut(s)	396
Sse9I	AATT	1 cut(s)	554
SsiI	CCGC	5 cut(s)	87, 112, 185, 437, 440
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	2 cut(s)	336, 561
TaaI	ACNGT	3 cut(s)	77, 432, 524
TaiI	ACGT	2 cut(s)	43, 477
TasI	AATT	1 cut(s)	554
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	2 cut(s)	114, 440
TfiI	GAWTC	1 cut(s)	346
TseI	GCWGC	5 cut(s)	80, 180, 216, 219, 424
TspDTI	ATGAA	1 cut(s)	401
XspI	CTAG	1 cut(s)	299
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.