Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005842

Physical Location & Seq

Genomic Coordinates Forward (+)

15305740 .. 15306051

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG100700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGGTCACCAGAGCCCGACTCTGGTGCCACGTAAACACCACTCACCGGACTCGAGTTCATCGGACGGCGTTGCCGCAATCAGCAGAGAGAAGAAGAGCCGCTACCCAGTAGACGACGACGACGGTGATTCGGTCGAGTGCTCTGGCAAGTTCTGCCTGTCATGCAGCGCTGGCATGAACGCCGATTGCGTGGCGCTGTGCTGCTGCCCCTACACTCTGGTCAACCTGTTGACTCTGGCCTTCGTGAAAGTGTTGTGGATGGTTGGGAGGAAGTGCTTGGGGTTAGGCAAGAACAAGAAGAAGGAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

103

Amino Acids

11.11

Weight (kDa)

8.44

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01516 AT3G01516 AT5G14690 AT5G14690
fragaria_vesca	FvH4_6g50860
malus_domestica	MD09G1031300.v1.1 MD17G1033200.v1.1
prunus_persica	Prupe.3G286300_v2.0.a1
pyrus_communis	pycom111g02500
rosa_chinensis	RchiOBHm_Chr2g0172251
rosa_laevigata	RLG00000014670
rosa_multiflora	Rmu_sc0009513.1_g000004 Rmu_sc0024549.1_g000007 Rmu_sc0041056.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080030 Rroxscaffold_2G00082460
rosa_rugosa	Rorug02G0558100
rosa_samantha	Rh2CG613700 Rh2DG661600 Rh4DG100700 Rh5AG268800 Rh5AG346300 Rh5BG357000 Rh5DG372400 Rh7AG115100 Rh7CG120300
rosa_wichuraiana	Rw2G052420 Rw5G032700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AccI	GTMKAC	1 cut(s)	111
AciI	CCGC	2 cut(s)	75, 100
AfeI	AGCGCT	1 cut(s)	169
AfiI	CCNNNNNNNGG	2 cut(s)	22, 46
Alw21I	GWGCWC	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	52
Aor51HI	AGCGCT	1 cut(s)	169
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	3 cut(s)	165, 201, 204
AspLEI	GCGC	2 cut(s)	170, 196
AsuHPI	GGTGA	2 cut(s)	36, 137
AvaI	CYCGRG	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	17
BarI	GAAGNNNNNNTAC	2 cut(s)	86, 118
Bbv12I	GWGCWC	1 cut(s)	143
BbvI	GCAGC	3 cut(s)	177, 188, 191
BccI	CCATC	1 cut(s)	253
BceAI	ACGGC	1 cut(s)	82
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BfaI	CTAG	1 cut(s)	310
BfoI	RGCGCY	2 cut(s)	171, 197
BisI	GCNGC	5 cut(s)	75, 100, 166, 202, 205
BlsI	GCNGC	5 cut(s)	76, 101, 167, 203, 206
BmeT110I	CYCGRG	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	27
BmrI	ACTGGG	1 cut(s)	101
BmuI	ACTGGG	1 cut(s)	101
BplI	GAGNNNNNCTC	1 cut(s)	36
BsaAI	YACGTR	1 cut(s)	32
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 46
Bse1I	ACTGG	1 cut(s)	107
BseGI	GGATG	1 cut(s)	264
BseLI	CCNNNNNNNGG	2 cut(s)	22, 46
BseNI	ACTGG	1 cut(s)	107
BseXI	GCAGC	3 cut(s)	177, 188, 191
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	25
BsiEI	CGRYCG	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	143
BsiHKCI	CYCGRG	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	22, 46
BsnI	GGCC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	52
Bsp1286I	GDGCHC	2 cut(s)	17, 143
BspACI	CCGC	2 cut(s)	75, 100
BspANI	GGCC	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	27
BspQI	GCTCTTC	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstBAI	YACGTR	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	172
BstEII	GGTNACC	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	264
BstH2I	RGCGCY	2 cut(s)	171, 197
BstHHI	GCGC	2 cut(s)	170, 196
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 162, 171
BstPI	GGTNACC	1 cut(s)	5
BstV1I	GCAGC	3 cut(s)	177, 188, 191
BsuRI	GGCC	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	172
CfoI	GCGC	2 cut(s)	170, 196
CviAII	CATG	2 cut(s)	162, 175
CviJI	RGCY	3 cut(s)	15, 99, 239
CviKI_1	RGCY	3 cut(s)	15, 99, 239
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	17
Eco47III	AGCGCT	1 cut(s)	169
Eco88I	CYCGRG	1 cut(s)	52
Eco91I	GGTNACC	1 cut(s)	5
EcoO65I	GGTNACC	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	17
FaeI	CATG	2 cut(s)	165, 178
FaiI	YATR	2 cut(s)	163, 176
FatI	CATG	2 cut(s)	161, 174
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	5 cut(s)	75, 100, 166, 202, 205
FokI	GGATG	1 cut(s)	271
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	5 cut(s)	75, 100, 166, 202, 205
FspBI	CTAG	1 cut(s)	310
GlaI	GCGC	2 cut(s)	169, 195
GluI	GCNGC	5 cut(s)	75, 100, 166, 202, 205
HaeII	RGCGCY	2 cut(s)	171, 197
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	1 cut(s)	47
HhaI	GCGC	2 cut(s)	170, 196
Hin1II	CATG	2 cut(s)	165, 178
Hin6I	GCGC	2 cut(s)	168, 194
HinP1I	GCGC	2 cut(s)	168, 194
HincII	GTYRAC	2 cut(s)	223, 231
HindII	GTYRAC	2 cut(s)	223, 231
HinfI	GANTC	4 cut(s)	19, 50, 128, 232
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	2 cut(s)	36, 137
Hpy166II	GTNNAC	4 cut(s)	35, 112, 223, 231
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	4 cut(s)	35, 112, 223, 231
Hpy99I	CGWCG	3 cut(s)	119, 122, 125
HpyAV	CCTTC	2 cut(s)	250, 295
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	1 cut(s)	165
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 162, 171
HpySE526I	ACGT	1 cut(s)	31
Hsp92II	CATG	2 cut(s)	165, 178
HspAI	GCGC	2 cut(s)	168, 194
LguI	GCTCTTC	1 cut(s)	89
Lsp1109I	GCAGC	3 cut(s)	177, 188, 191
MaeI	CTAG	1 cut(s)	310
MaeII	ACGT	1 cut(s)	31
MaeIII	GTNAC	1 cut(s)	5
MboII	GAAGA	3 cut(s)	103, 106, 310
MhlI	GDGCHC	2 cut(s)	17, 143
MlyI	GAGTC	3 cut(s)	13, 44, 226
MnlI	CCTC	1 cut(s)	261
MspI	CCGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	3 cut(s)	153, 162, 171
NlaIII	CATG	2 cut(s)	165, 178
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	5
PaeR7I	CTCGAG	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	5 cut(s)	76, 101, 167, 203, 206
PleI	GAGTC	3 cut(s)	13, 44, 226
PpsI	GAGTC	3 cut(s)	13, 44, 226
Ppu21I	YACGTR	1 cut(s)	32
PspEI	GGTNACC	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	27
PspXI	VCTCGAGB	1 cut(s)	52
SapI	GCTCTTC	1 cut(s)	89
SatI	GCNGC	5 cut(s)	75, 100, 166, 202, 205
SchI	GAGTC	3 cut(s)	13, 44, 226
SduI	GDGCHC	2 cut(s)	17, 143
SetI	ASST	2 cut(s)	34, 228
Sfr274I	CTCGAG	1 cut(s)	52
SlaI	CTCGAG	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
SsiI	CCGC	2 cut(s)	75, 100
SspMI	CTAG	1 cut(s)	310
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	1 cut(s)	34
TaqI	TCGA	2 cut(s)	53, 135
TaqII	GACCGA	1 cut(s)	121
TauI	GCSGC	2 cut(s)	77, 102
TfiI	GAWTC	1 cut(s)	128
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	3 cut(s)	165, 201, 204
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	48, 191
XhoI	CTCGAG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	111
XspI	CTAG	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.