Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005842

Physical Location & Seq

Genomic Coordinates Forward (+)

25882201 .. 25886788

Gene Structure 4588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G286300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGACGAGATTAACCCACCTCGGTCGTCACGTAAACGCGGGACGTCATCCGATCATCAGGGCGACACATCCTCAGCGGCAAGACCCACAACCCCAAGGGAGAGCCGGTACGCCGTGGATGACGCGGGGGACCGGATAGAGTGCTCTGGCAAGTATTGCAAGTCATGCAGCGGCGCTTTGATAGCCGACTGCGTGGCACTCTGCTGCTGCCCATGCGCTTTGCTGAATCTTCTCACTCTTGCCTTCGTTAAAGTGCCCTGGATGGTGGGCAGGAAGTGTTTGGGACTGGGGAAATCCAAAGGGCAAAAGCGTAAAAGCAAGAGAAAATGCAGCAGTATTGATGATGATGATGATCATCATCATCGGTGTGAGGTGGAGAGAAAAGAAGAGGAAAGAATGCCAGAAATTTCATCAGACCAAATGGAGTGTGTGAGTGCCAGGCTGGAGGCAGAGAGGGTTTGGTTAGAATTGTACCAGATTGGTCATCTGGGTTTTGGTAGGGTGTCTTTCAGTGGTATGCAATCTCTGGGTAAGGCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

19.96

Weight (kDa)

8.25

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01516 AT3G01516 AT5G14690 AT5G14690
fragaria_vesca	FvH4_6g50860
malus_domestica	MD09G1031300.v1.1 MD17G1033200.v1.1
prunus_persica	Prupe.3G286300_v2.0.a1
pyrus_communis	pycom111g02500
rosa_chinensis	RchiOBHm_Chr2g0172251
rosa_laevigata	RLG00000014670
rosa_multiflora	Rmu_sc0009513.1_g000004 Rmu_sc0024549.1_g000007 Rmu_sc0041056.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080030 Rroxscaffold_2G00082460
rosa_rugosa	Rorug02G0558100
rosa_samantha	Rh2CG613700 Rh2DG661600 Rh4DG100700 Rh5AG268800 Rh5AG346300 Rh5BG357000 Rh5DG372400 Rh7AG115100 Rh7CG120300
rosa_wichuraiana	Rw2G052420 Rw5G032700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	47
AccII	CGCG	2 cut(s)	39, 125
AciI	CCGC	4 cut(s)	39, 77, 125, 171
AcsI	RAATTY	1 cut(s)	405
AcyI	GRCGYC	1 cut(s)	44
AfaI	GTAC	2 cut(s)	110, 473
AjnI	CCWGG	2 cut(s)	257, 437
Alw21I	GWGCWC	1 cut(s)	146
AoxI	GGCC	1 cut(s)	534
ApeKI	GCWGC	4 cut(s)	168, 204, 207, 330
ApoI	RAATTY	1 cut(s)	405
AspLEI	GCGC	2 cut(s)	176, 218
AspS9I	GGNCC	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	146
BbvCI	CCTCAGC	1 cut(s)	73
BbvI	GCAGC	4 cut(s)	180, 191, 194, 342
BccI	CCATC	1 cut(s)	256
BceAI	ACGGC	1 cut(s)	98
BciT130I	CCWGG	2 cut(s)	259, 439
BclI	TGATCA	1 cut(s)	352
BfoI	RGCGCY	1 cut(s)	177
BisI	GCNGC	6 cut(s)	78, 169, 172, 205, 208, 331
BlsI	GCNGC	6 cut(s)	79, 170, 173, 206, 209, 332
Bme1390I	CCNGG	2 cut(s)	259, 439
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	131
BmrFI	CCNGG	2 cut(s)	259, 439
BmrI	ACTGGG	1 cut(s)	296
BmuI	ACTGGG	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	464
Bpu10I	CCTNAGC	1 cut(s)	73
BsaAI	YACGTR	1 cut(s)	32
BsaBI	GATNNNNATC	3 cut(s)	351, 354, 357
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	4 cut(s)	20, 95, 114, 257
BsaWI	WCCGGW	1 cut(s)	132
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bse118I	RCCGGY	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	291
Bse8I	GATNNNNATC	3 cut(s)	351, 354, 357
BseBI	CCWGG	2 cut(s)	259, 439
BseDI	CCNNGG	4 cut(s)	20, 95, 114, 257
BseGI	GGATG	4 cut(s)	47, 68, 124, 267
BseJI	GATNNNNATC	3 cut(s)	351, 354, 357
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	291
BseSI	GKGCMC	1 cut(s)	258
BseXI	GCAGC	4 cut(s)	180, 191, 194, 342
Bsh1236I	CGCG	2 cut(s)	39, 125
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	536
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	106, 133
BslFI	GGGAC	3 cut(s)	55, 143, 297
BsmFI	GGGAC	3 cut(s)	55, 143, 297
BsmI	GAATGC	1 cut(s)	402
BsnI	GGCC	1 cut(s)	536
Bsp1286I	GDGCHC	2 cut(s)	146, 258
Bsp143I	GATC	2 cut(s)	52, 352
BspACI	CCGC	4 cut(s)	39, 77, 125, 171
BspANI	GGCC	1 cut(s)	536
BspCNI	CTCAG	1 cut(s)	86
BspFNI	CGCG	2 cut(s)	39, 125
BspLI	GGNNCC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	291
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	4 cut(s)	20, 95, 114, 257
BssMI	GATC	2 cut(s)	52, 352
BssNI	GRCGYC	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	95
Bst2UI	CCWGG	2 cut(s)	259, 439
Bst6I	CTCTTC	1 cut(s)	381
BstACI	GRCGYC	1 cut(s)	44
BstAPI	GCANNNNNTGC	2 cut(s)	156, 165
BstBAI	YACGTR	1 cut(s)	32
BstDEI	CTNAG	1 cut(s)	73
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	4 cut(s)	47, 68, 124, 267
BstFNI	CGCG	2 cut(s)	39, 125
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	2 cut(s)	176, 218
BstKTI	GATC	2 cut(s)	55, 355
BstMBI	GATC	2 cut(s)	52, 352
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	4 cut(s)	156, 165, 182, 213
BstNI	CCWGG	2 cut(s)	259, 439
BstSCI	CCNGG	2 cut(s)	257, 437
BstSLI	GKGCMC	1 cut(s)	258
BstUI	CGCG	2 cut(s)	39, 125
BstV1I	GCAGC	4 cut(s)	180, 191, 194, 342
BsuRI	GGCC	1 cut(s)	536
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	4 cut(s)	47, 68, 124, 267
BtsIMutI	CAGTG	1 cut(s)	517
CfoI	GCGC	2 cut(s)	176, 218
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	130
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	109, 472
CviAII	CATG	2 cut(s)	165, 213
CviJI	RGCY	4 cut(s)	105, 185, 442, 536
CviKI_1	RGCY	4 cut(s)	105, 185, 442, 536
CviQI	GTAC	2 cut(s)	109, 472
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	2 cut(s)	54, 354
DpnII	GATC	2 cut(s)	52, 352
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	130
EcoRII	CCWGG	2 cut(s)	257, 437
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	2 cut(s)	168, 216
FaiI	YATR	3 cut(s)	166, 214, 518
FaqI	GGGAC	3 cut(s)	55, 143, 297
FatI	CATG	2 cut(s)	164, 212
FauI	CCCGC	2 cut(s)	32, 118
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	6 cut(s)	78, 169, 172, 205, 208, 331
FokI	GGATG	4 cut(s)	34, 55, 131, 274
Fsp4HI	GCNGC	6 cut(s)	78, 169, 172, 205, 208, 331
GlaI	GCGC	2 cut(s)	175, 217
GluI	GCNGC	6 cut(s)	78, 169, 172, 205, 208, 331
GsuI	CTGGAG	1 cut(s)	464
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	536
HapII	CCGG	2 cut(s)	106, 133
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	2 cut(s)	176, 218
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	168, 216
Hin6I	GCGC	2 cut(s)	174, 216
HinP1I	GCGC	2 cut(s)	174, 216
HinfI	GANTC	1 cut(s)	226
HpaII	CCGG	2 cut(s)	106, 133
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	2 cut(s)	52, 415
Hpy8I	GTNNAC	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	253
HpyCH4IV	ACGT	2 cut(s)	31, 44
HpyCH4V	TGCA	4 cut(s)	159, 168, 330, 520
HpyF10VI	GCNNNNNNNGC	4 cut(s)	156, 165, 182, 213
HpyF3I	CTNAG	1 cut(s)	73
HpySE526I	ACGT	2 cut(s)	31, 44
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	2 cut(s)	168, 216
HspAI	GCGC	2 cut(s)	174, 216
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	52, 352
Lsp1109I	GCAGC	4 cut(s)	180, 191, 194, 342
MaeII	ACGT	2 cut(s)	31, 44
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	2 cut(s)	54, 354
MboI	GATC	2 cut(s)	52, 352
MboII	GAAGA	2 cut(s)	221, 398
MhlI	GDGCHC	2 cut(s)	146, 258
MluCI	AATT	3 cut(s)	405, 467, 538
MnlI	CCTC	6 cut(s)	30, 82, 364, 382, 439, 447
MseI	TTAA	2 cut(s)	12, 249
MslI	CAYNNNNRTG	1 cut(s)	366
MspA1I	CMGCKG	2 cut(s)	77, 171
MspI	CCGG	2 cut(s)	106, 133
MspR9I	CCNGG	2 cut(s)	259, 439
Mva1269I	GAATGC	1 cut(s)	402
MvaI	CCWGG	2 cut(s)	259, 439
MvnI	CGCG	2 cut(s)	39, 125
MwoI	GCNNNNNNNGC	4 cut(s)	156, 165, 182, 213
NdeII	GATC	2 cut(s)	52, 352
NlaIII	CATG	2 cut(s)	168, 216
NlaIV	GGNNCC	1 cut(s)	131
NmuCI	GTSAC	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PctI	GAATGC	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	6 cut(s)	79, 170, 173, 206, 209, 332
Ppu21I	YACGTR	1 cut(s)	32
Psp6I	CCWGG	2 cut(s)	257, 437
PspGI	CCWGG	2 cut(s)	257, 437
PspN4I	GGNNCC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	130
RsaI	GTAC	2 cut(s)	110, 473
RsaNI	GTAC	2 cut(s)	109, 472
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	12, 249
SatI	GCNGC	6 cut(s)	78, 169, 172, 205, 208, 331
Sau3AI	GATC	2 cut(s)	52, 352
Sau96I	GGNCC	1 cut(s)	130
ScrFI	CCNGG	2 cut(s)	259, 439
SduI	GDGCHC	2 cut(s)	146, 258
SetI	ASST	4 cut(s)	22, 34, 47, 375
SinI	GGWCC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	366
Sse9I	AATT	3 cut(s)	405, 467, 538
SsiI	CCGC	4 cut(s)	39, 77, 125, 171
StyD4I	CCNGG	2 cut(s)	257, 437
StyI	CCWWGG	1 cut(s)	95
TaiI	ACGT	2 cut(s)	34, 47
TaqII	GACCGA	1 cut(s)	12
TasI	AATT	3 cut(s)	405, 467, 538
TauI	GCSGC	2 cut(s)	80, 174
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	2 cut(s)	12, 249
Tru9I	TTAA	2 cut(s)	12, 249
TscAI	CASTG	1 cut(s)	517
TseFI	GTSAC	1 cut(s)	27
TseI	GCWGC	4 cut(s)	168, 204, 207, 330
Tsp45I	GTSAC	1 cut(s)	27
TspDTI	ATGAA	1 cut(s)	399
TspRI	CASTG	1 cut(s)	517
VpaK11BI	GGWCC	1 cut(s)	130
XapI	RAATTY	1 cut(s)	405
ZraI	GACGTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.