Rw2G052420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005842
Physical Location & Seq
Forward (+)
80382399 .. 80383043
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G052420.1

Sequence Viewer

Length: 645 bp
ATGGGTCACCAGAGCCGGACTCCTCCGGTGCCACGTAAACACCACTCACCGGATTCGAGTTCATCGGACGGTGGAGCCGCCGCAATCACCAGAGCGAAGAAGAGCCGCTACCCAGTAGATGACGACGACGACGACGACGGGGCCGGCGGTGATTGTGTCGAGTGCTCCGGCAAGTACTGCCGGTCATGCAGCGCCGGCATGATCGCCGATTGCGTGGCGCTGTGCTGCTGCCCCTGCGCTCTGGTCAACCTGTTGACTCTGGCCTTCGTGAAAGTGCCGTGGATGGTTGGGAGGAAGTGCTTGGGGTTAGGCAAGAACAAGAAGAAGAAGAAGGAAAACCAGAGCCAGGGGCAGAATCGGAAATCCAAAAAAAAGTGCAGGAGCAAGAAGAAGCAGGTTGGTAGTAGTCATCGGCATCAACGTTGCGCGGCGGAGGAGGAATTGCCGGCGCAGATATCGTGCTACGTGTACGGTTTTGATGATCAGGAGGAGGAAGGGGAAGAAGGGGAGGATTGTGTGAGTAGTGCAGAGAGGGTATGGCTGGAATTGTACCAGGTGGGACATTTGGGTTTTGGGAGGGTTTCGTTTAGTGGGGGTGGAGTTCAGTCCGTGCAGGGGAAGGGCAATTTGGGAAACATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

23.14

Weight (kDa)

8.49

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 385
AccB1I GGYRCC 1 cut(s) 28
AccII CGCG 1 cut(s) 428
AciI CCGC 6 cut(s) 78, 81, 106, 147, 428, 431
AclI AACGTT 1 cut(s) 421
AfaI GTAC 3 cut(s) 176, 470, 551
AfiI CCNNNNNNNGG 3 cut(s) 49, 346, 615
AflIII ACRYGT 1 cut(s) 465
AjnI CCWGG 2 cut(s) 345, 552
AjuI GAANNNNNNNTTGG 2 cut(s) 611, 643
Alw21I GWGCWC 1 cut(s) 167
AoxI GGCC 2 cut(s) 141, 261
ApeKI GCWGC 3 cut(s) 189, 225, 228
AspLEI GCGC 5 cut(s) 194, 220, 239, 428, 451
AspS9I GGNCC 1 cut(s) 141
AsuHPI GGTGA 3 cut(s) 39, 79, 161
BanI GGYRCC 1 cut(s) 28
BarI GAAGNNNNNNTAC 2 cut(s) 92, 124
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 3 cut(s) 201, 212, 215
BccI CCATC 1 cut(s) 277
BceAI ACGGC 1 cut(s) 262
BciT130I CCWGG 2 cut(s) 347, 554
BclI TGATCA 1 cut(s) 481
BfoI RGCGCY 2 cut(s) 195, 221
BfuAI ACCTGC 1 cut(s) 385
BisI GCNGC 7 cut(s) 78, 81, 106, 190, 226, 229, 429
BlsI GCNGC 7 cut(s) 79, 82, 107, 191, 227, 230, 430
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 2 cut(s) 347, 554
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 3 cut(s) 30, 76, 142
BmrFI CCNGG 2 cut(s) 347, 554
BmrI ACTGGG 1 cut(s) 107
BmsI GCATC 1 cut(s) 424
BmuI ACTGGG 1 cut(s) 107
BplI GAGNNNNNCTC 1 cut(s) 36
BsaAI YACGTR 2 cut(s) 35, 466
BsaJI CCNNGG 2 cut(s) 278, 346
BsaWI WCCGGW 2 cut(s) 25, 49
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 346, 615
Bse118I RCCGGY 4 cut(s) 143, 180, 194, 445
Bse1I ACTGG 1 cut(s) 113
BseBI CCWGG 2 cut(s) 347, 554
BseDI CCNNGG 2 cut(s) 278, 346
BseGI GGATG 1 cut(s) 288
BseLI CCNNNNNNNGG 3 cut(s) 49, 346, 615
BseNI ACTGG 1 cut(s) 113
BseRI GAGGAG 3 cut(s) 12, 449, 503
BseXI GCAGC 3 cut(s) 201, 212, 215
BsgI GTGCAG 3 cut(s) 397, 546, 632
Bsh1236I CGCG 1 cut(s) 428
BshFI GGCC 2 cut(s) 143, 263
BshNI GGYRCC 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 167
BsiSI CCGG 8 cut(s) 16, 26, 50, 144, 168, 181, 195, 446
BslFI GGGAC 1 cut(s) 573
BslI CCNNNNNNNGG 3 cut(s) 49, 346, 615
BsmFI GGGAC 1 cut(s) 573
BsnI GGCC 2 cut(s) 143, 263
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 2 cut(s) 201, 481
BspACI CCGC 6 cut(s) 78, 81, 106, 147, 428, 431
BspANI GGCC 2 cut(s) 143, 263
BspFNI CGCG 1 cut(s) 428
BspLI GGNNCC 3 cut(s) 30, 76, 142
BspMI ACCTGC 1 cut(s) 385
BspQI GCTCTTC 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 28
BsrFI RCCGGY 4 cut(s) 143, 180, 194, 445
BsrI ACTGG 1 cut(s) 113
BssAI RCCGGY 4 cut(s) 143, 180, 194, 445
BssECI CCNNGG 2 cut(s) 278, 346
BssMI GATC 2 cut(s) 201, 481
Bst2UI CCWGG 2 cut(s) 347, 554
Bst4CI ACNGT 2 cut(s) 71, 473
Bst6I CTCTTC 1 cut(s) 95
BstAPI GCANNNNNTGC 1 cut(s) 177
BstBAI YACGTR 2 cut(s) 35, 466
BstC8I GCNNGC 3 cut(s) 145, 196, 447
BstDSI CCRYGG 1 cut(s) 278
BstEII GGTNACC 1 cut(s) 5
BstF5I GGATG 1 cut(s) 288
BstFNI CGCG 1 cut(s) 428
BstH2I RGCGCY 2 cut(s) 195, 221
BstHHI GCGC 5 cut(s) 194, 220, 239, 428, 451
BstKTI GATC 2 cut(s) 204, 484
BstMBI GATC 2 cut(s) 201, 481
BstMWI GCNNNNNNNGC 4 cut(s) 177, 186, 195, 234
BstNI CCWGG 2 cut(s) 347, 554
BstPI GGTNACC 1 cut(s) 5
BstSCI CCNGG 2 cut(s) 345, 552
BstUI CGCG 1 cut(s) 428
BstV1I GCAGC 3 cut(s) 201, 212, 215
BsuRI GGCC 2 cut(s) 143, 263
BtgI CCRYGG 1 cut(s) 278
BtsCI GGATG 1 cut(s) 288
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 3 cut(s) 145, 196, 447
CfoI GCGC 5 cut(s) 194, 220, 239, 428, 451
Cfr10I RCCGGY 4 cut(s) 143, 180, 194, 445
Cfr13I GGNCC 1 cut(s) 141
CsiI ACCWGGT 1 cut(s) 552
Csp6I GTAC 3 cut(s) 175, 469, 550
CviAII CATG 3 cut(s) 186, 199, 637
CviJI RGCY 7 cut(s) 15, 77, 105, 143, 263, 345, 541
CviKI_1 RGCY 7 cut(s) 15, 77, 105, 143, 263, 345, 541
CviQI GTAC 3 cut(s) 175, 469, 550
DpnI GATC 2 cut(s) 203, 483
DpnII GATC 2 cut(s) 201, 481
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
EciI GGCGGA 1 cut(s) 446
Eco32I GATATC 1 cut(s) 456
Eco91I GGTNACC 1 cut(s) 5
EcoO65I GGTNACC 1 cut(s) 5
EcoRII CCWGG 2 cut(s) 345, 552
EcoRV GATATC 1 cut(s) 456
FaeI CATG 3 cut(s) 189, 202, 640
FaiI YATR 4 cut(s) 187, 200, 538, 638
FaqI GGGAC 1 cut(s) 573
FatI CATG 3 cut(s) 185, 198, 636
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 7 cut(s) 78, 81, 106, 190, 226, 229, 429
FokI GGATG 1 cut(s) 295
Fsp4HI GCNGC 7 cut(s) 78, 81, 106, 190, 226, 229, 429
GlaI GCGC 5 cut(s) 193, 219, 238, 427, 450
GluI GCNGC 7 cut(s) 78, 81, 106, 190, 226, 229, 429
HaeII RGCGCY 2 cut(s) 195, 221
HaeIII GGCC 2 cut(s) 143, 263
HapII CCGG 8 cut(s) 16, 26, 50, 144, 168, 181, 195, 446
HhaI GCGC 5 cut(s) 194, 220, 239, 428, 451
Hin1II CATG 3 cut(s) 189, 202, 640
Hin6I GCGC 5 cut(s) 192, 218, 237, 426, 449
HinP1I GCGC 5 cut(s) 192, 218, 237, 426, 449
HincII GTYRAC 2 cut(s) 247, 255
HindII GTYRAC 2 cut(s) 247, 255
HinfI GANTC 4 cut(s) 19, 53, 256, 355
HpaII CCGG 8 cut(s) 16, 26, 50, 144, 168, 181, 195, 446
HphI GGTGA 3 cut(s) 39, 79, 161
Hpy166II GTNNAC 4 cut(s) 38, 247, 255, 469
Hpy188I TCNGA 2 cut(s) 67, 360
Hpy188III TCNNGA 2 cut(s) 268, 485
Hpy8I GTNNAC 4 cut(s) 38, 247, 255, 469
Hpy99I CGWCG 5 cut(s) 128, 131, 134, 137, 140
HpyAV CCTTC 5 cut(s) 274, 325, 488, 497, 613
HpyCH4III ACNGT 2 cut(s) 71, 473
HpyCH4IV ACGT 3 cut(s) 34, 421, 465
HpyCH4V TGCA 4 cut(s) 189, 378, 527, 613
HpyF10VI GCNNNNNNNGC 4 cut(s) 177, 186, 195, 234
HpySE526I ACGT 3 cut(s) 34, 421, 465
Hsp92II CATG 3 cut(s) 189, 202, 640
HspAI GCGC 5 cut(s) 192, 218, 237, 426, 449
KroI GCCGGC 3 cut(s) 143, 194, 445
KroNI GCCGGC 3 cut(s) 145, 196, 447
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 2 cut(s) 201, 481
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 3 cut(s) 74, 170, 381
Lsp1109I GCAGC 3 cut(s) 201, 212, 215
LweI GCATC 1 cut(s) 424
MabI ACCWGGT 1 cut(s) 552
MaeII ACGT 3 cut(s) 34, 421, 465
MaeIII GTNAC 1 cut(s) 5
MalI GATC 2 cut(s) 203, 483
MboI GATC 2 cut(s) 201, 481
MboII GAAGA 7 cut(s) 109, 112, 334, 337, 340, 400, 512
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 4 cut(s) 440, 545, 625, 640
MlyI GAGTC 2 cut(s) 13, 250
MnlI CCTC 9 cut(s) 33, 285, 427, 430, 481, 484, 502, 525, 570
MroNI GCCGGC 3 cut(s) 143, 194, 445
MspI CCGG 8 cut(s) 16, 26, 50, 144, 168, 181, 195, 446
MspR9I CCNGG 2 cut(s) 347, 554
MvaI CCWGG 2 cut(s) 347, 554
MvnI CGCG 1 cut(s) 428
MwoI GCNNNNNNNGC 4 cut(s) 177, 186, 195, 234
NaeI GCCGGC 3 cut(s) 145, 196, 447
NdeII GATC 2 cut(s) 201, 481
NgoMIV GCCGGC 3 cut(s) 143, 194, 445
NlaIII CATG 3 cut(s) 189, 202, 640
NlaIV GGNNCC 3 cut(s) 30, 76, 142
NmuCI GTSAC 1 cut(s) 5
PciSI GCTCTTC 1 cut(s) 95
PcsI WCGNNNNNNNCGW 4 cut(s) 129, 132, 210, 418
PdiI GCCGGC 3 cut(s) 145, 196, 447
PfeI GAWTC 2 cut(s) 53, 355
PkrI GCNGC 7 cut(s) 79, 82, 107, 191, 227, 230, 430
PleI GAGTC 2 cut(s) 13, 250
PpsI GAGTC 2 cut(s) 13, 250
Ppu21I YACGTR 2 cut(s) 35, 466
Psp1406I AACGTT 1 cut(s) 421
Psp6I CCWGG 2 cut(s) 345, 552
PspEI GGTNACC 1 cut(s) 5
PspGI CCWGG 2 cut(s) 345, 552
PspN4I GGNNCC 3 cut(s) 30, 76, 142
PspPI GGNCC 1 cut(s) 141
RsaI GTAC 3 cut(s) 176, 470, 551
RsaNI GTAC 3 cut(s) 175, 469, 550
SapI GCTCTTC 1 cut(s) 95
SatI GCNGC 7 cut(s) 78, 81, 106, 190, 226, 229, 429
Sau3AI GATC 2 cut(s) 201, 481
Sau96I GGNCC 1 cut(s) 141
ScaI AGTACT 1 cut(s) 176
SchI GAGTC 2 cut(s) 13, 250
ScrFI CCNGG 2 cut(s) 347, 554
SduI GDGCHC 1 cut(s) 167
SetI ASST 6 cut(s) 37, 252, 399, 424, 468, 558
SexAI ACCWGGT 1 cut(s) 552
SfaNI GCATC 1 cut(s) 424
Sse9I AATT 4 cut(s) 440, 545, 625, 640
SsiI CCGC 6 cut(s) 78, 81, 106, 147, 428, 431
StyD4I CCNGG 2 cut(s) 345, 552
TaaI ACNGT 2 cut(s) 71, 473
TaiI ACGT 3 cut(s) 37, 424, 468
TaqI TCGA 2 cut(s) 56, 159
TasI AATT 4 cut(s) 440, 545, 625, 640
TatI WGTACW 1 cut(s) 174
TauI GCSGC 4 cut(s) 80, 83, 108, 431
TfiI GAWTC 2 cut(s) 53, 355
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 3 cut(s) 189, 225, 228
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 51
TspGWI ACGGA 1 cut(s) 598
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.