Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005842

Physical Location & Seq

Genomic Coordinates Reverse (-)

2382598 .. 2387249

Gene Structure 4652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1033200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGACGACAATAACCCGCCTCGGGCGTTACGTAACCACCACGGCAGTTCGTCGTCGTCTTCGTCGTCATCGTCCGAGTCGTCCGACCATCGCGGAGCATGTCACACGTCATCCGCGGGACACACCACGACACCCGCGCGGAAGAGCCGGTACGCCGCGGACGACGCCGTGGGGGACCGGATAGAGTGCACGGGGAGGTACTGCAAGTCGTGCAGCGGTACGTTGATCGCGGACTGCGTGGCGCTCTGCTGCTGCCCCTGCGCCGTGGTGAACTTTCTGACCCTGGCGTTCGTTAAAGTGCCGTGGATGGTGGGGAGGAAGTGTCTGGGATTGGGGAAAAAGAAGGGGCAGAAGCGGGAAAACAAGAGGAGAAAATGCAAGGGGGGTGGGAGTAGTAAAAGCGGGATTGAGTGGGTGGTGGAGAGAGGGGAGGAGGAGAGGAAACAGCCTGAGGTTTCACGGCGCGGCGGGTACGGCGAGGAGGAAACGGAGTGCGGTGGTGCGAGGCTGGAGGCGGAGAGGGTGTGGTTAGAGTTGTACCAGATTGGACACCTGGGTTTTGGGAGAGTTTCCTTTACTGGTACTCAATCTCTGGGTAATAAGGGGCAATTAGGGAACGTAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

22.42

Weight (kDa)

9.03

Isoelectric Point (pI)

58.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01516 AT3G01516 AT5G14690 AT5G14690
fragaria_vesca	FvH4_6g50860
malus_domestica	MD09G1031300.v1.1 MD17G1033200.v1.1
prunus_persica	Prupe.3G286300_v2.0.a1
pyrus_communis	pycom111g02500
rosa_chinensis	RchiOBHm_Chr2g0172251
rosa_laevigata	RLG00000014670
rosa_multiflora	Rmu_sc0009513.1_g000004 Rmu_sc0024549.1_g000007 Rmu_sc0041056.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080030 Rroxscaffold_2G00082460
rosa_rugosa	Rorug02G0558100
rosa_samantha	Rh2CG613700 Rh2DG661600 Rh4DG100700 Rh5AG268800 Rh5AG346300 Rh5BG357000 Rh5DG372400 Rh7AG115100 Rh7CG120300
rosa_wichuraiana	Rw2G052420 Rw5G032700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	7 cut(s)	93, 116, 137, 139, 158, 230, 465
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	6 cut(s)	152, 200, 220, 473, 539, 583
AfiI	CCNNNNNNNGG	1 cut(s)	22
AflIII	ACRYGT	1 cut(s)	105
AjiI	CACGTC	1 cut(s)	108
AjnI	CCWGG	2 cut(s)	282, 552
Alw21I	GWGCWC	1 cut(s)	191
Alw44I	GTGCAC	1 cut(s)	187
Ama87I	CYCGRG	1 cut(s)	21
ApaLI	GTGCAC	1 cut(s)	187
ApeKI	GCWGC	3 cut(s)	213, 249, 252
AspLEI	GCGC	4 cut(s)	139, 244, 263, 465
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	280
AvaI	CYCGRG	1 cut(s)	21
AvaII	GGWCC	1 cut(s)	175
AxyI	CCTNAGG	1 cut(s)	450
BaeGI	GKGCMC	1 cut(s)	191
BarI	GAAGNNNNNNTAC	2 cut(s)	134, 166
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	225, 236, 239
BccI	CCATC	2 cut(s)	96, 301
BceAI	ACGGC	6 cut(s)	58, 152, 248, 286, 476, 490
BciT130I	CCWGG	2 cut(s)	284, 554
BfoI	RGCGCY	1 cut(s)	245
BisI	GCNGC	5 cut(s)	156, 214, 250, 253, 466
BlsI	GCNGC	5 cut(s)	157, 215, 251, 254, 467
Bme1390I	CCNGG	2 cut(s)	284, 554
Bme18I	GGWCC	1 cut(s)	175
BmeT110I	CYCGRG	1 cut(s)	21
BmgBI	CACGTC	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	2 cut(s)	284, 554
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	530
BsaAI	YACGTR	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	9 cut(s)	20, 40, 114, 156, 168, 264, 282, 302, 553
BsaWI	WCCGGW	1 cut(s)	177
BsaXI	ACNNNNNCTCC	4 cut(s)	307, 337, 509, 539
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	147
Bse1I	ACTGG	1 cut(s)	583
Bse21I	CCTNAGG	1 cut(s)	450
BseBI	CCWGG	2 cut(s)	284, 554
BseDI	CCNNGG	9 cut(s)	20, 40, 114, 156, 168, 264, 282, 302, 553
BseGI	GGATG	2 cut(s)	110, 312
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	1 cut(s)	583
BseRI	GAGGAG	4 cut(s)	382, 446, 449, 494
BseSI	GKGCMC	1 cut(s)	191
BseXI	GCAGC	3 cut(s)	225, 236, 239
BsgI	GTGCAG	1 cut(s)	232
Bsh1236I	CGCG	7 cut(s)	93, 116, 137, 139, 158, 230, 465
BsiHKAI	GWGCWC	1 cut(s)	191
BsiHKCI	CYCGRG	1 cut(s)	21
BsiSI	CCGG	2 cut(s)	148, 178
BslFI	GGGAC	2 cut(s)	132, 188
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmFI	GGGAC	2 cut(s)	132, 188
BsoBI	CYCGRG	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	225
BspCNI	CTCAG	1 cut(s)	442
BspFNI	CGCG	7 cut(s)	93, 116, 137, 139, 158, 230, 465
BspLI	GGNNCC	1 cut(s)	176
BspQI	GCTCTTC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	583
BssAI	RCCGGY	1 cut(s)	147
BssECI	CCNNGG	9 cut(s)	20, 40, 114, 156, 168, 264, 282, 302, 553
BssMI	GATC	1 cut(s)	225
BssNI	GRCGYC	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	284, 554
Bst6I	CTCTTC	1 cut(s)	137
BstACI	GRCGYC	1 cut(s)	165
BstAPI	GCANNNNNTGC	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	32
BstDEI	CTNAG	1 cut(s)	450
BstDSI	CCRYGG	6 cut(s)	40, 114, 156, 168, 264, 302
BstF5I	GGATG	2 cut(s)	110, 312
BstFNI	CGCG	7 cut(s)	93, 116, 137, 139, 158, 230, 465
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	4 cut(s)	139, 244, 263, 465
BstKTI	GATC	1 cut(s)	228
BstMBI	GATC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 210, 258, 474
BstNI	CCWGG	2 cut(s)	284, 554
BstNSI	RCATGY	1 cut(s)	102
BstSCI	CCNGG	2 cut(s)	282, 552
BstSLI	GKGCMC	1 cut(s)	191
BstSNI	TACGTA	1 cut(s)	32
BstUI	CGCG	7 cut(s)	93, 116, 137, 139, 158, 230, 465
BstV1I	GCAGC	3 cut(s)	225, 236, 239
BstV2I	GAAGAC	1 cut(s)	51
Bsu36I	CCTNAGG	1 cut(s)	450
BtgI	CCRYGG	6 cut(s)	40, 114, 156, 168, 264, 302
BtgZI	GCGATG	1 cut(s)	74
BtrI	CACGTC	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	110, 312
CfoI	GCGC	4 cut(s)	139, 244, 263, 465
Cfr10I	RCCGGY	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	175
Cfr42I	CCGCGG	2 cut(s)	117, 159
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	6 cut(s)	151, 199, 219, 472, 538, 582
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviAII	CATG	1 cut(s)	99
CviJI	RGCY	3 cut(s)	147, 448, 508
CviKI_1	RGCY	3 cut(s)	147, 448, 508
CviQI	GTAC	6 cut(s)	151, 199, 219, 472, 538, 582
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
EciI	GGCGGA	1 cut(s)	530
Eco105I	TACGTA	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	175
Eco81I	CCTNAGG	1 cut(s)	450
Eco88I	CYCGRG	1 cut(s)	21
EcoRII	CCWGG	2 cut(s)	282, 552
FaeI	CATG	1 cut(s)	102
FaiI	YATR	1 cut(s)	100
FaqI	GGGAC	2 cut(s)	132, 188
FatI	CATG	1 cut(s)	98
FauI	CCCGC	6 cut(s)	24, 109, 142, 348, 395, 461
Fnu4HI	GCNGC	5 cut(s)	156, 214, 250, 253, 466
FokI	GGATG	2 cut(s)	97, 319
Fsp4HI	GCNGC	5 cut(s)	156, 214, 250, 253, 466
GlaI	GCGC	4 cut(s)	138, 243, 262, 464
GluI	GCNGC	5 cut(s)	156, 214, 250, 253, 466
GsuI	CTGGAG	1 cut(s)	530
HaeII	RGCGCY	1 cut(s)	245
HapII	CCGG	2 cut(s)	148, 178
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	4 cut(s)	139, 244, 263, 465
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	1 cut(s)	102
Hin6I	GCGC	4 cut(s)	137, 242, 261, 463
HinP1I	GCGC	4 cut(s)	137, 242, 261, 463
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	2 cut(s)	148, 178
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	2 cut(s)	189, 271
Hpy188I	TCNGA	3 cut(s)	76, 85, 279
Hpy8I	GTNNAC	2 cut(s)	189, 271
Hpy99I	CGWCG	4 cut(s)	55, 58, 67, 167
HpyAV	CCTTC	1 cut(s)	337
HpyCH4IV	ACGT	4 cut(s)	31, 107, 221, 618
HpyCH4V	TGCA	4 cut(s)	189, 204, 213, 378
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 210, 258, 474
HpyF3I	CTNAG	1 cut(s)	450
HpySE526I	ACGT	4 cut(s)	31, 107, 221, 618
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	102
HspAI	GCGC	4 cut(s)	137, 242, 261, 463
KspI	CCGCGG	2 cut(s)	117, 159
Kzo9I	GATC	1 cut(s)	225
LguI	GCTCTTC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	95
Lsp1109I	GCAGC	3 cut(s)	225, 236, 239
MaeII	ACGT	4 cut(s)	31, 107, 221, 618
MaeIII	GTNAC	3 cut(s)	27, 32, 101
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	2 cut(s)	51, 154
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	1 cut(s)	608
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	108
MseI	TTAA	2 cut(s)	294, 625
MspA1I	CMGCKG	3 cut(s)	116, 158, 216
MspI	CCGG	2 cut(s)	148, 178
MspR9I	CCNGG	2 cut(s)	284, 554
MvaI	CCWGG	2 cut(s)	284, 554
MvnI	CGCG	7 cut(s)	93, 116, 137, 139, 158, 230, 465
MwoI	GCNNNNNNNGC	4 cut(s)	164, 210, 258, 474
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	1 cut(s)	102
NlaIV	GGNNCC	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	101
NspI	RCATGY	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	7 cut(s)	28, 59, 62, 68, 77, 159, 234
PkrI	GCNGC	5 cut(s)	157, 215, 251, 254, 467
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Ppu21I	YACGTR	1 cut(s)	32
Psp6I	CCWGG	2 cut(s)	282, 552
PspGI	CCWGG	2 cut(s)	282, 552
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	175
RsaI	GTAC	6 cut(s)	152, 200, 220, 473, 539, 583
RsaNI	GTAC	6 cut(s)	151, 199, 219, 472, 538, 582
SacII	CCGCGG	2 cut(s)	117, 159
SapI	GCTCTTC	1 cut(s)	137
SaqAI	TTAA	2 cut(s)	294, 625
SatI	GCNGC	5 cut(s)	156, 214, 250, 253, 466
Sau3AI	GATC	1 cut(s)	225
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	2 cut(s)	284, 554
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	7 cut(s)	34, 110, 200, 224, 456, 555, 621
Sfr303I	CCGCGG	2 cut(s)	117, 159
SgrBI	CCGCGG	2 cut(s)	117, 159
SinI	GGWCC	1 cut(s)	175
SnaBI	TACGTA	1 cut(s)	32
Sse9I	AATT	1 cut(s)	608
StyD4I	CCNGG	2 cut(s)	282, 552
TaiI	ACGT	4 cut(s)	34, 110, 224, 621
TasI	AATT	1 cut(s)	608
TauI	GCSGC	2 cut(s)	158, 468
Tru1I	TTAA	2 cut(s)	294, 625
Tru9I	TTAA	2 cut(s)	294, 625
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	3 cut(s)	213, 249, 252
Tsp45I	GTSAC	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	503
VneI	GTGCAC	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	175
XceI	RCATGY	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.