Rroxscaffold_2G00080030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005842
Physical Location & Seq
Reverse (-)
2916682 .. 2921139
4458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00080030.1

Sequence Viewer

Length: 627 bp
ATGGGTCACCAGAGCCCGACTCCTCCGGTGCCACGTAAACACCACTCACCGGATTCGAGTTCATCGGACGGTGGTGCCGCCGCAATCACCAGAGCGAAGAAGAGCCGCTACCCAGTACACGACGACGACGGCGCCGGCGGTGATTGGGTCGAGTGCTCCGGCAAGTACTGCCGGTCATGCAGCGCTGGCATGATCGCCGATTGCGTGGCCCTGTGCTGCTGCCCCTGCGCTCTGGTCAACCTGTTGACTCTGGCCTTCGTGAAAGTGCCGTGGATGGTTGGGAGGAAGTGCTTGGGGTTAGGCAAGAACAAGAAGAAGAAGGAAAACCAGTGCCAGGGGCAGAATCGGAAATCCAAAAAAAAGTGCAGGAGCAAGAAGAAGCAGGTTAGTAGTAGTCATCGGCATCAACGTTGCGCGGCCGAGGAGGAATTGCCGGCGCAGATATCGTGCTACGTGTACGGTGTTGATGATCAGGAGGAGGAAGAAGAGGAGGATTGTGTGAGTAGTGCAGAGAGGGTATGGTTGGAATTGTACCAGGTGGGACATCTGGGTTTTGGGAGGGTTTCGTTTGGTGGTGGTGGAGTTCAATCTGTGCAGGGGAAGGGCAATTTGGGAAACATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

22.56

Weight (kDa)

8.72

Isoelectric Point (pI)

53.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 373
AccB1I GGYRCC 3 cut(s) 28, 74, 131
AccII CGCG 1 cut(s) 416
AciI CCGC 5 cut(s) 78, 81, 106, 138, 416
AclI AACGTT 1 cut(s) 409
AcoI YGGCCR 1 cut(s) 417
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 4 cut(s) 117, 167, 458, 533
AfeI AGCGCT 1 cut(s) 184
AfiI CCNNNNNNNGG 2 cut(s) 49, 334
AflIII ACRYGT 1 cut(s) 453
AgsI TTSAA 1 cut(s) 587
AjnI CCWGG 2 cut(s) 333, 534
AjuI GAANNNNNNNTTGG 2 cut(s) 593, 625
Alw21I GWGCWC 1 cut(s) 158
Aor51HI AGCGCT 1 cut(s) 184
AoxI GGCC 3 cut(s) 207, 252, 417
ApeKI GCWGC 3 cut(s) 180, 216, 219
AspLEI GCGC 5 cut(s) 134, 185, 230, 416, 439
AspS9I GGNCC 1 cut(s) 208
AsuHPI GGTGA 3 cut(s) 39, 79, 152
BanI GGYRCC 3 cut(s) 28, 74, 131
BanII GRGCYC 1 cut(s) 17
BarI GAAGNNNNNNTAC 2 cut(s) 92, 124
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 3 cut(s) 192, 203, 206
BccI CCATC 1 cut(s) 268
BceAI ACGGC 2 cut(s) 145, 253
BciT130I CCWGG 2 cut(s) 335, 536
BclI TGATCA 1 cut(s) 469
BfoI RGCGCY 2 cut(s) 135, 186
BfuAI ACCTGC 1 cut(s) 373
BisI GCNGC 7 cut(s) 78, 81, 106, 181, 217, 220, 417
BlsI GCNGC 7 cut(s) 79, 82, 107, 182, 218, 221, 418
BmcAI AGTACT 1 cut(s) 167
Bme1390I CCNGG 2 cut(s) 335, 536
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 3 cut(s) 30, 76, 133
BmrFI CCNGG 2 cut(s) 335, 536
BmrI ACTGGG 1 cut(s) 107
BmsI GCATC 1 cut(s) 412
BmuI ACTGGG 1 cut(s) 107
BplI GAGNNNNNCTC 1 cut(s) 36
BsaAI YACGTR 2 cut(s) 35, 454
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 3 cut(s) 269, 334, 420
BsaWI WCCGGW 2 cut(s) 25, 49
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 334
Bse118I RCCGGY 3 cut(s) 134, 171, 433
Bse1I ACTGG 2 cut(s) 113, 328
BseBI CCWGG 2 cut(s) 335, 536
BseDI CCNNGG 3 cut(s) 269, 334, 420
BseGI GGATG 1 cut(s) 279
BseLI CCNNNNNNNGG 2 cut(s) 49, 334
BseNI ACTGG 2 cut(s) 113, 328
BseRI GAGGAG 4 cut(s) 12, 437, 491, 503
BseX3I CGGCCG 1 cut(s) 417
BseXI GCAGC 3 cut(s) 192, 203, 206
BsgI GTGCAG 3 cut(s) 385, 528, 614
Bsh1236I CGCG 1 cut(s) 416
Bsh1285I CGRYCG 1 cut(s) 420
BshFI GGCC 3 cut(s) 209, 254, 419
BshNI GGYRCC 3 cut(s) 28, 74, 131
BsiEI CGRYCG 1 cut(s) 420
BsiHKAI GWGCWC 1 cut(s) 158
BsiSI CCGG 6 cut(s) 26, 50, 135, 159, 172, 434
BslFI GGGAC 1 cut(s) 555
BslI CCNNNNNNNGG 2 cut(s) 49, 334
BsmFI GGGAC 1 cut(s) 555
BsnI GGCC 3 cut(s) 209, 254, 419
Bsp1286I GDGCHC 2 cut(s) 17, 158
Bsp143I GATC 2 cut(s) 192, 469
BspACI CCGC 5 cut(s) 78, 81, 106, 138, 416
BspANI GGCC 3 cut(s) 209, 254, 419
BspFNI CGCG 1 cut(s) 416
BspLI GGNNCC 3 cut(s) 30, 76, 133
BspMI ACCTGC 1 cut(s) 373
BspQI GCTCTTC 1 cut(s) 95
BspT107I GGYRCC 3 cut(s) 28, 74, 131
BsrFI RCCGGY 3 cut(s) 134, 171, 433
BsrI ACTGG 2 cut(s) 113, 328
BssAI RCCGGY 3 cut(s) 134, 171, 433
BssECI CCNNGG 3 cut(s) 269, 334, 420
BssMI GATC 2 cut(s) 192, 469
BssNI GRCGYC 1 cut(s) 132
Bst2UI CCWGG 2 cut(s) 335, 536
Bst4CI ACNGT 2 cut(s) 71, 461
Bst6I CTCTTC 2 cut(s) 95, 480
BstACI GRCGYC 1 cut(s) 132
BstAPI GCANNNNNTGC 1 cut(s) 168
BstBAI YACGTR 2 cut(s) 35, 454
BstC8I GCNNGC 3 cut(s) 136, 187, 435
BstDSI CCRYGG 1 cut(s) 269
BstEII GGTNACC 1 cut(s) 5
BstF5I GGATG 1 cut(s) 279
BstFNI CGCG 1 cut(s) 416
BstH2I RGCGCY 2 cut(s) 135, 186
BstHHI GCGC 5 cut(s) 134, 185, 230, 416, 439
BstKTI GATC 2 cut(s) 195, 472
BstMBI GATC 2 cut(s) 192, 469
BstMCI CGRYCG 1 cut(s) 420
BstMWI GCNNNNNNNGC 4 cut(s) 168, 177, 186, 225
BstNI CCWGG 2 cut(s) 335, 536
BstPI GGTNACC 1 cut(s) 5
BstSCI CCNGG 2 cut(s) 333, 534
BstUI CGCG 1 cut(s) 416
BstV1I GCAGC 3 cut(s) 192, 203, 206
BstZI CGGCCG 1 cut(s) 417
BsuRI GGCC 3 cut(s) 209, 254, 419
BtgI CCRYGG 1 cut(s) 269
BtsCI GGATG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 335
BveI ACCTGC 1 cut(s) 373
Cac8I GCNNGC 3 cut(s) 136, 187, 435
CfoI GCGC 5 cut(s) 134, 185, 230, 416, 439
Cfr10I RCCGGY 3 cut(s) 134, 171, 433
Cfr13I GGNCC 1 cut(s) 208
CsiI ACCWGGT 1 cut(s) 534
Csp6I GTAC 4 cut(s) 116, 166, 457, 532
CviAII CATG 3 cut(s) 177, 190, 619
CviJI RGCY 5 cut(s) 15, 105, 209, 254, 419
CviKI_1 RGCY 5 cut(s) 15, 105, 209, 254, 419
CviQI GTAC 4 cut(s) 116, 166, 457, 532
DinI GGCGCC 1 cut(s) 133
DpnI GATC 2 cut(s) 194, 471
DpnII GATC 2 cut(s) 192, 469
EaeI YGGCCR 1 cut(s) 417
EagI CGGCCG 1 cut(s) 417
Eam1104I CTCTTC 2 cut(s) 95, 480
EarI CTCTTC 2 cut(s) 95, 480
EclXI CGGCCG 1 cut(s) 417
Eco24I GRGCYC 1 cut(s) 17
Eco32I GATATC 1 cut(s) 444
Eco47III AGCGCT 1 cut(s) 184
Eco52I CGGCCG 1 cut(s) 417
Eco91I GGTNACC 1 cut(s) 5
EcoO65I GGTNACC 1 cut(s) 5
EcoRII CCWGG 2 cut(s) 333, 534
EcoRV GATATC 1 cut(s) 444
EcoT38I GRGCYC 1 cut(s) 17
EgeI GGCGCC 1 cut(s) 133
EheI GGCGCC 1 cut(s) 133
FaeI CATG 3 cut(s) 180, 193, 622
FaiI YATR 4 cut(s) 178, 191, 520, 620
FaqI GGGAC 1 cut(s) 555
FatI CATG 3 cut(s) 176, 189, 618
FbaI TGATCA 1 cut(s) 469
Fnu4HI GCNGC 7 cut(s) 78, 81, 106, 181, 217, 220, 417
FokI GGATG 1 cut(s) 286
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 7 cut(s) 78, 81, 106, 181, 217, 220, 417
GlaI GCGC 5 cut(s) 133, 184, 229, 415, 438
GluI GCNGC 7 cut(s) 78, 81, 106, 181, 217, 220, 417
HaeII RGCGCY 2 cut(s) 135, 186
HaeIII GGCC 3 cut(s) 209, 254, 419
HapII CCGG 6 cut(s) 26, 50, 135, 159, 172, 434
HhaI GCGC 5 cut(s) 134, 185, 230, 416, 439
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 3 cut(s) 180, 193, 622
Hin6I GCGC 5 cut(s) 132, 183, 228, 414, 437
HinP1I GCGC 5 cut(s) 132, 183, 228, 414, 437
HincII GTYRAC 2 cut(s) 238, 246
HindII GTYRAC 2 cut(s) 238, 246
HinfI GANTC 4 cut(s) 19, 53, 247, 343
HpaII CCGG 6 cut(s) 26, 50, 135, 159, 172, 434
HphI GGTGA 3 cut(s) 39, 79, 152
Hpy166II GTNNAC 5 cut(s) 38, 118, 238, 246, 457
Hpy188I TCNGA 2 cut(s) 67, 348
Hpy188III TCNNGA 2 cut(s) 259, 473
Hpy8I GTNNAC 5 cut(s) 38, 118, 238, 246, 457
Hpy99I CGWCG 3 cut(s) 125, 128, 131
HpyAV CCTTC 3 cut(s) 265, 313, 595
HpyCH4III ACNGT 2 cut(s) 71, 461
HpyCH4IV ACGT 3 cut(s) 34, 409, 453
HpyCH4V TGCA 4 cut(s) 180, 366, 509, 595
HpyF10VI GCNNNNNNNGC 4 cut(s) 168, 177, 186, 225
HpySE526I ACGT 3 cut(s) 34, 409, 453
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 3 cut(s) 180, 193, 622
HspAI GCGC 5 cut(s) 132, 183, 228, 414, 437
KasI GGCGCC 1 cut(s) 131
KroI GCCGGC 2 cut(s) 134, 433
KroNI GCCGGC 2 cut(s) 136, 435
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 2 cut(s) 192, 469
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 2 cut(s) 161, 369
Lsp1109I GCAGC 3 cut(s) 192, 203, 206
LweI GCATC 1 cut(s) 412
MabI ACCWGGT 1 cut(s) 534
MaeII ACGT 3 cut(s) 34, 409, 453
MaeIII GTNAC 1 cut(s) 5
MalI GATC 2 cut(s) 194, 471
MboI GATC 2 cut(s) 192, 469
MboII GAAGA 7 cut(s) 109, 112, 325, 328, 388, 494, 497
MhlI GDGCHC 2 cut(s) 17, 158
MluCI AATT 4 cut(s) 428, 527, 607, 622
Mly113I GGCGCC 1 cut(s) 132
MlyI GAGTC 2 cut(s) 13, 241
MmeI TCCRAC 1 cut(s) 504
MreI CGCCGGCG 1 cut(s) 134
MroNI GCCGGC 2 cut(s) 134, 433
MspI CCGG 6 cut(s) 26, 50, 135, 159, 172, 434
MspR9I CCNGG 2 cut(s) 335, 536
MvaI CCWGG 2 cut(s) 335, 536
MvnI CGCG 1 cut(s) 416
MwoI GCNNNNNNNGC 4 cut(s) 168, 177, 186, 225
NaeI GCCGGC 2 cut(s) 136, 435
NarI GGCGCC 1 cut(s) 132
NdeII GATC 2 cut(s) 192, 469
NgoMIV GCCGGC 2 cut(s) 134, 433
NlaIII CATG 3 cut(s) 180, 193, 622
NlaIV GGNNCC 3 cut(s) 30, 76, 133
NmeAIII GCCGAG 1 cut(s) 445
NmuCI GTSAC 1 cut(s) 5
PciSI GCTCTTC 1 cut(s) 95
PcsI WCGNNNNNNNCGW 2 cut(s) 201, 406
PdiI GCCGGC 2 cut(s) 136, 435
PfeI GAWTC 2 cut(s) 53, 343
PkrI GCNGC 7 cut(s) 79, 82, 107, 182, 218, 221, 418
PleI GAGTC 2 cut(s) 13, 241
PluTI GGCGCC 1 cut(s) 135
PpsI GAGTC 2 cut(s) 13, 241
Ppu21I YACGTR 2 cut(s) 35, 454
Psp1406I AACGTT 1 cut(s) 409
Psp6I CCWGG 2 cut(s) 333, 534
PspEI GGTNACC 1 cut(s) 5
PspGI CCWGG 2 cut(s) 333, 534
PspN4I GGNNCC 3 cut(s) 30, 76, 133
PspPI GGNCC 1 cut(s) 208
RsaI GTAC 4 cut(s) 117, 167, 458, 533
RsaNI GTAC 4 cut(s) 116, 166, 457, 532
SapI GCTCTTC 1 cut(s) 95
SatI GCNGC 7 cut(s) 78, 81, 106, 181, 217, 220, 417
Sau3AI GATC 2 cut(s) 192, 469
Sau96I GGNCC 1 cut(s) 208
ScaI AGTACT 1 cut(s) 167
SchI GAGTC 2 cut(s) 13, 241
ScrFI CCNGG 2 cut(s) 335, 536
SduI GDGCHC 2 cut(s) 17, 158
SetI ASST 6 cut(s) 37, 243, 387, 412, 456, 540
SexAI ACCWGGT 1 cut(s) 534
SfaNI GCATC 1 cut(s) 412
SfoI GGCGCC 1 cut(s) 133
SgrAI CRCCGGYG 1 cut(s) 134
Sse9I AATT 4 cut(s) 428, 527, 607, 622
SsiI CCGC 5 cut(s) 78, 81, 106, 138, 416
SspDI GGCGCC 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 333, 534
TaaI ACNGT 2 cut(s) 71, 461
TaiI ACGT 3 cut(s) 37, 412, 456
TaqI TCGA 2 cut(s) 56, 150
TasI AATT 4 cut(s) 428, 527, 607, 622
TatI WGTACW 2 cut(s) 115, 165
TauI GCSGC 4 cut(s) 80, 83, 108, 419
TfiI GAWTC 2 cut(s) 53, 343
TscAI CASTG 1 cut(s) 335
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 3 cut(s) 180, 216, 219
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 51
TspRI CASTG 1 cut(s) 335
ZrmI AGTACT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.