Rh7CG120300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005842
Physical Location & Seq
Forward (+)
9192800 .. 9193039
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG120300.1

Sequence Viewer

Length: 240 bp
ATGAGCCGCTACCCAGTAGACGACGACGGCGCCGGCAGTGATTGGGTCGAGTGCTCCGGCAAGTACTGCCGGTCATGCAGTGCCGGCATGATCGCCGATTGCGTGGCTCTGTGCTGTTGCCCCTACGCTCTGGTCAACCTGTTGACTTTGGCCTTCGTGAAAGTGTCGTGGACGGTCGGGAGGAAGTTCTTGGGGTTAGGCAAGAACAAGAAGAAGGAAAAAGGGGTGTGCACTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.52

Weight (kDa)

8.67

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 29
AccI GTMKAC 1 cut(s) 18
AciI CCGC 1 cut(s) 7
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 1 cut(s) 65
Alw21I GWGCWC 2 cut(s) 56, 233
Alw44I GTGCAC 1 cut(s) 229
AoxI GGCC 1 cut(s) 150
ApaLI GTGCAC 1 cut(s) 229
AspLEI GCGC 1 cut(s) 32
BaeGI GKGCMC 1 cut(s) 233
BanI GGYRCC 1 cut(s) 29
Bbv12I GWGCWC 2 cut(s) 56, 233
BceAI ACGGC 1 cut(s) 43
BfoI RGCGCY 1 cut(s) 33
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
BmcAI AGTACT 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 31
BmrI ACTGGG 1 cut(s) 8
BmuI ACTGGG 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 30
Bse118I RCCGGY 3 cut(s) 32, 69, 83
Bse1I ACTGG 1 cut(s) 14
BseNI ACTGG 1 cut(s) 14
BseSI GKGCMC 1 cut(s) 233
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 1 cut(s) 152
BshNI GGYRCC 1 cut(s) 29
BsiEI CGRYCG 1 cut(s) 177
BsiHKAI GWGCWC 2 cut(s) 56, 233
BsiSI CCGG 4 cut(s) 33, 57, 70, 84
BsnI GGCC 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 56, 233
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 1 cut(s) 7
BspANI GGCC 1 cut(s) 152
BspLI GGNNCC 1 cut(s) 31
BspT107I GGYRCC 1 cut(s) 29
BsrFI RCCGGY 3 cut(s) 32, 69, 83
BsrI ACTGG 1 cut(s) 14
BssAI RCCGGY 3 cut(s) 32, 69, 83
BssMI GATC 1 cut(s) 90
BssNI GRCGYC 1 cut(s) 30
Bst4CI ACNGT 2 cut(s) 175, 235
BstACI GRCGYC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 34, 85
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 3 cut(s) 66, 75, 84
BstSLI GKGCMC 1 cut(s) 233
BsuRI GGCC 1 cut(s) 152
BtsI GCAGTG 2 cut(s) 43, 85
BtsIMutI CAGTG 3 cut(s) 43, 85, 231
Cac8I GCNNGC 2 cut(s) 34, 85
CfoI GCGC 1 cut(s) 32
Cfr10I RCCGGY 3 cut(s) 32, 69, 83
Csp6I GTAC 1 cut(s) 64
CviAII CATG 2 cut(s) 75, 88
CviJI RGCY 3 cut(s) 6, 107, 152
CviKI_1 RGCY 3 cut(s) 6, 107, 152
CviQI GTAC 1 cut(s) 64
DinI GGCGCC 1 cut(s) 31
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
EgeI GGCGCC 1 cut(s) 31
EheI GGCGCC 1 cut(s) 31
FaeI CATG 2 cut(s) 78, 91
FaiI YATR 2 cut(s) 76, 89
FatI CATG 2 cut(s) 74, 87
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 7
Fsp4HI GCNGC 1 cut(s) 7
GlaI GCGC 1 cut(s) 31
GluI GCNGC 1 cut(s) 7
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 1 cut(s) 152
HapII CCGG 4 cut(s) 33, 57, 70, 84
HhaI GCGC 1 cut(s) 32
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 2 cut(s) 78, 91
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HincII GTYRAC 2 cut(s) 136, 144
HindII GTYRAC 2 cut(s) 136, 144
HpaII CCGG 4 cut(s) 33, 57, 70, 84
Hpy166II GTNNAC 5 cut(s) 19, 136, 144, 171, 231
Hpy188III TCNNGA 2 cut(s) 157, 178
Hpy8I GTNNAC 5 cut(s) 19, 136, 144, 171, 231
Hpy99I CGWCG 2 cut(s) 26, 29
HpyAV CCTTC 2 cut(s) 163, 208
HpyCH4III ACNGT 2 cut(s) 175, 235
HpyCH4V TGCA 2 cut(s) 78, 231
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 75, 84
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 2 cut(s) 78, 91
HspAI GCGC 1 cut(s) 30
KasI GGCGCC 1 cut(s) 29
KroI GCCGGC 2 cut(s) 32, 83
KroNI GCCGGC 2 cut(s) 34, 85
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 7 cut(s) 27, 46, 70, 83, 97, 116, 152
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 1 cut(s) 223
MhlI GDGCHC 2 cut(s) 56, 233
Mly113I GGCGCC 1 cut(s) 30
MnlI CCTC 1 cut(s) 174
MroNI GCCGGC 2 cut(s) 32, 83
MspI CCGG 4 cut(s) 33, 57, 70, 84
MwoI GCNNNNNNNGC 3 cut(s) 66, 75, 84
NaeI GCCGGC 2 cut(s) 34, 85
NarI GGCGCC 1 cut(s) 30
NdeII GATC 1 cut(s) 90
NgoMIV GCCGGC 2 cut(s) 32, 83
NlaIII CATG 2 cut(s) 78, 91
NlaIV GGNNCC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PdiI GCCGGC 2 cut(s) 34, 85
PkrI GCNGC 1 cut(s) 8
PluTI GGCGCC 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 31
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SatI GCNGC 1 cut(s) 7
Sau3AI GATC 1 cut(s) 90
ScaI AGTACT 1 cut(s) 65
SduI GDGCHC 2 cut(s) 56, 233
SetI ASST 1 cut(s) 141
SfoI GGCGCC 1 cut(s) 31
SsiI CCGC 1 cut(s) 7
SspDI GGCGCC 1 cut(s) 29
TaaI ACNGT 2 cut(s) 175, 235
TaqI TCGA 1 cut(s) 48
TatI WGTACW 1 cut(s) 63
TauI GCSGC 1 cut(s) 9
TscAI CASTG 3 cut(s) 43, 85, 238
TspRI CASTG 3 cut(s) 43, 85, 238
VneI GTGCAC 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 18
ZrmI AGTACT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.