Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005842

Physical Location & Seq

Genomic Coordinates Forward (+)

5284947 .. 5287307

Gene Structure 2361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00082460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCCGGTCTCTTGCAGTTGAAACTTTTAAGTGATGAATCTGAACAAGACTGTATTGTTGATTTAAGAAGAAGCAGGTTAGTACGTAGTAGTCATCGGCATCAACGGTGCGCCACGGAGGAGGAGTTGCCGGCGCAGATATCGTGCTACGTGTACGGAGTTGATGATCAGGAGGAAGAAGAGCAAGAGGAGGAGGATTGTGTGAGTAGTGCAGAGAGGGTATGGCTGCAATTGTACCAGGTACCAGGTACGACATTTGGGTTTTGTGCTTTTAGTGGTGGTGGAGTTCAGTATGTGCAGGCGAAGGGCGATTTGGGAAACATGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

12.28

Weight (kDa)

4.41

Isoelectric Point (pI)

77.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01516 AT3G01516 AT5G14690 AT5G14690
fragaria_vesca	FvH4_6g50860
malus_domestica	MD09G1031300.v1.1 MD17G1033200.v1.1
prunus_persica	Prupe.3G286300_v2.0.a1
pyrus_communis	pycom111g02500
rosa_chinensis	RchiOBHm_Chr2g0172251
rosa_laevigata	RLG00000014670
rosa_multiflora	Rmu_sc0009513.1_g000004 Rmu_sc0024549.1_g000007 Rmu_sc0041056.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080030 Rroxscaffold_2G00082460
rosa_rugosa	Rorug02G0558100
rosa_samantha	Rh2CG613700 Rh2DG661600 Rh4DG100700 Rh5AG268800 Rh5AG346300 Rh5BG357000 Rh5DG372400 Rh7AG115100 Rh7CG120300
rosa_wichuraiana	Rw2G052420 Rw5G032700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	66
Acc65I	GGTACC	1 cut(s)	241
AccB1I	GGYRCC	1 cut(s)	241
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	5 cut(s)	84, 155, 236, 243, 250
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	2 cut(s)	237, 244
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
Alw26I	GTCTC	1 cut(s)	14
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	226
Asp718I	GGTACC	1 cut(s)	241
AspLEI	GCGC	2 cut(s)	113, 136
BanI	GGYRCC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	213
BciT130I	CCWGG	2 cut(s)	239, 246
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	66
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme1390I	CCNGG	2 cut(s)	239, 246
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	2 cut(s)	239, 246
BmsI	GCATC	1 cut(s)	109
BsaAI	YACGTR	2 cut(s)	86, 151
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bse118I	RCCGGY	2 cut(s)	5, 130
BseBI	CCWGG	2 cut(s)	239, 246
BseDI	CCNNGG	1 cut(s)	114
BseRI	GAGGAG	4 cut(s)	134, 137, 203, 206
BseXI	GCAGC	1 cut(s)	213
BsgI	GTGCAG	2 cut(s)	231, 317
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	241
BsiSI	CCGG	2 cut(s)	6, 131
BsmAI	GTCTC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	166
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	243
BspMI	ACCTGC	1 cut(s)	66
BspQI	GCTCTTC	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	14
BsrFI	RCCGGY	2 cut(s)	5, 130
BssAI	RCCGGY	2 cut(s)	5, 130
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	1 cut(s)	166
Bst2UI	CCWGG	2 cut(s)	239, 246
Bst4CI	ACNGT	2 cut(s)	53, 108
Bst6I	CTCTTC	1 cut(s)	174
BstBAI	YACGTR	2 cut(s)	86, 151
BstC8I	GCNNGC	2 cut(s)	132, 300
BstDSI	CCRYGG	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	113, 136
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	166
BstNI	CCWGG	2 cut(s)	239, 246
BstSCI	CCNGG	2 cut(s)	237, 244
BstSNI	TACGTA	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	132, 300
CfoI	GCGC	2 cut(s)	113, 136
Cfr10I	RCCGGY	2 cut(s)	5, 130
CsiI	ACCWGGT	2 cut(s)	237, 244
Csp6I	GTAC	5 cut(s)	83, 154, 235, 242, 249
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	2 cut(s)	5, 226
CviKI_1	RGCY	2 cut(s)	5, 226
CviQI	GTAC	5 cut(s)	83, 154, 235, 242, 249
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco105I	TACGTA	1 cut(s)	86
Eco31I	GGTCTC	1 cut(s)	14
Eco32I	GATATC	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	237, 244
EcoRV	GATATC	1 cut(s)	141
FaeI	CATG	1 cut(s)	325
FaiI	YATR	3 cut(s)	223, 294, 323
FatI	CATG	1 cut(s)	321
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	227
GlaI	GCGC	2 cut(s)	112, 135
GluI	GCNGC	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	6, 131
HhaI	GCGC	2 cut(s)	113, 136
Hin1II	CATG	1 cut(s)	325
Hin6I	GCGC	2 cut(s)	111, 134
HinP1I	GCGC	2 cut(s)	111, 134
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	2 cut(s)	6, 131
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	2 cut(s)	53, 108
HpyCH4IV	ACGT	2 cut(s)	85, 150
HpyCH4V	TGCA	4 cut(s)	16, 212, 229, 298
HpySE526I	ACGT	2 cut(s)	85, 150
Hsp92II	CATG	1 cut(s)	325
HspAI	GCGC	2 cut(s)	111, 134
KpnI	GGTACC	1 cut(s)	245
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	166
LguI	GCTCTTC	1 cut(s)	174
LpnPI	CCDG	9 cut(s)	19, 61, 144, 155, 224, 231, 251, 258, 284
Lsp1109I	GCAGC	1 cut(s)	213
LweI	GCATC	1 cut(s)	109
MabI	ACCWGGT	2 cut(s)	237, 244
MaeII	ACGT	2 cut(s)	85, 150
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	3 cut(s)	81, 188, 191
MfeI	CAATTG	1 cut(s)	230
MluCI	AATT	2 cut(s)	230, 325
MnlI	CCTC	7 cut(s)	112, 115, 166, 181, 184, 187, 210
MroNI	GCCGGC	1 cut(s)	130
MseI	TTAA	3 cut(s)	29, 65, 328
MspI	CCGG	2 cut(s)	6, 131
MspR9I	CCNGG	2 cut(s)	239, 246
MunI	CAATTG	1 cut(s)	230
MvaI	CCWGG	2 cut(s)	239, 246
NaeI	GCCGGC	1 cut(s)	132
NdeII	GATC	1 cut(s)	166
NgoMIV	GCCGGC	1 cut(s)	130
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	174
PdiI	GCCGGC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	228
Ppu21I	YACGTR	2 cut(s)	86, 151
Psp6I	CCWGG	2 cut(s)	237, 244
PspGI	CCWGG	2 cut(s)	237, 244
PspN4I	GGNNCC	1 cut(s)	243
RsaI	GTAC	5 cut(s)	84, 155, 236, 243, 250
RsaNI	GTAC	5 cut(s)	83, 154, 235, 242, 249
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	3 cut(s)	29, 65, 328
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	1 cut(s)	166
ScrFI	CCNGG	2 cut(s)	239, 246
SetI	ASST	5 cut(s)	80, 88, 153, 243, 250
SexAI	ACCWGGT	2 cut(s)	237, 244
SfaNI	GCATC	1 cut(s)	109
SnaBI	TACGTA	1 cut(s)	86
Sse9I	AATT	2 cut(s)	230, 325
StyD4I	CCNGG	2 cut(s)	237, 244
TaaI	ACNGT	2 cut(s)	53, 108
TaiI	ACGT	2 cut(s)	88, 153
TasI	AATT	2 cut(s)	230, 325
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	3 cut(s)	29, 65, 328
Tru9I	TTAA	3 cut(s)	29, 65, 328
TseI	GCWGC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	51
TspGWI	ACGGA	2 cut(s)	131, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.