Rh5DG372400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0005842
Physical Location & Seq
Forward (+)
56284818 .. 56285021
204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG372400.1

Sequence Viewer

Length: 204 bp
ATGGGTCACCAAAGCCCGACTCCGGTGCCACGTAAACACCACTCACTAGACTCGAGTTCATCAGACAGCGCCACCGCAATCAGCAGAGCGAAGAAGAGACGCTACCTAGTAGACTACGGCGCCAACGATGATTGGGTCGAGTGCTCCGGCAAGTACTGCCGGTCATGCAGTGCCTGCATGATCGCAGATTGCGTGGCGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.32

Weight (kDa)

8.34

Isoelectric Point (pI)

76.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 25, 119
AccI GTMKAC 1 cut(s) 111
AciI CCGC 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 22
Alw21I GWGCWC 1 cut(s) 146
Alw26I GTCTC 1 cut(s) 91
AlwNI CAGNNNCTG 1 cut(s) 174
Ama87I CYCGRG 1 cut(s) 52
AspLEI GCGC 3 cut(s) 71, 122, 199
AvaI CYCGRG 1 cut(s) 52
BanI GGYRCC 2 cut(s) 25, 119
BarI GAAGNNNNNNTAC 2 cut(s) 86, 118
Bbv12I GWGCWC 1 cut(s) 146
BceAI ACGGC 1 cut(s) 133
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 2 cut(s) 47, 107
BfoI RGCGCY 3 cut(s) 72, 123, 200
BmcAI AGTACT 1 cut(s) 155
BmeT110I CYCGRG 1 cut(s) 52
BmiI GGNNCC 2 cut(s) 27, 121
BsaAI YACGTR 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 120
BsaWI WCCGGW 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 22
BshNI GGYRCC 2 cut(s) 25, 119
BsiHKAI GWGCWC 1 cut(s) 146
BsiHKCI CYCGRG 1 cut(s) 52
BsiSI CCGG 3 cut(s) 23, 147, 160
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 91
BsmBI CGTCTC 1 cut(s) 91
BsoBI CYCGRG 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 27, 121
BspT107I GGYRCC 2 cut(s) 25, 119
BsrFI RCCGGY 1 cut(s) 159
BssAI RCCGGY 1 cut(s) 159
BssMI GATC 1 cut(s) 180
BssNI GRCGYC 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 89
BstACI GRCGYC 1 cut(s) 120
BstAPI GCANNNNNTGC 2 cut(s) 156, 174
BstBAI YACGTR 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 175
BstEII GGTNACC 1 cut(s) 5
BstH2I RGCGCY 3 cut(s) 72, 123, 200
BstHHI GCGC 3 cut(s) 71, 122, 199
BstKTI GATC 1 cut(s) 183
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 1 cut(s) 180
BstMWI GCNNNNNNNGC 3 cut(s) 156, 165, 174
BstPI GGTNACC 1 cut(s) 5
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 175
CaiI CAGNNNCTG 1 cut(s) 174
CfoI GCGC 3 cut(s) 71, 122, 199
Cfr10I RCCGGY 1 cut(s) 159
CseI GACGC 1 cut(s) 108
Csp6I GTAC 1 cut(s) 154
CviAII CATG 2 cut(s) 165, 178
CviJI RGCY 1 cut(s) 15
CviKI_1 RGCY 1 cut(s) 15
CviQI GTAC 1 cut(s) 154
DinI GGCGCC 1 cut(s) 121
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 52
Eco91I GGTNACC 1 cut(s) 5
EcoO65I GGTNACC 1 cut(s) 5
EgeI GGCGCC 1 cut(s) 121
EheI GGCGCC 1 cut(s) 121
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 2 cut(s) 168, 181
FaiI YATR 2 cut(s) 166, 179
FatI CATG 2 cut(s) 164, 177
FblI GTMKAC 1 cut(s) 111
FspBI CTAG 2 cut(s) 47, 107
GlaI GCGC 3 cut(s) 70, 121, 198
HaeII RGCGCY 3 cut(s) 72, 123, 200
HapII CCGG 3 cut(s) 23, 147, 160
HgaI GACGC 1 cut(s) 108
HhaI GCGC 3 cut(s) 71, 122, 199
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 2 cut(s) 168, 181
Hin6I GCGC 3 cut(s) 69, 120, 197
HinP1I GCGC 3 cut(s) 69, 120, 197
HinfI GANTC 2 cut(s) 19, 50
HpaII CCGG 3 cut(s) 23, 147, 160
Hpy166II GTNNAC 2 cut(s) 35, 112
Hpy188I TCNGA 1 cut(s) 64
Hpy8I GTNNAC 2 cut(s) 35, 112
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 168, 177
HpyF10VI GCNNNNNNNGC 3 cut(s) 156, 165, 174
HpySE526I ACGT 1 cut(s) 31
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 2 cut(s) 168, 181
HspAI GCGC 3 cut(s) 69, 120, 197
KasI GGCGCC 1 cut(s) 119
Kzo9I GATC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 4 cut(s) 36, 160, 173, 187
MaeI CTAG 2 cut(s) 47, 107
MaeII ACGT 1 cut(s) 31
MaeIII GTNAC 1 cut(s) 5
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 2 cut(s) 103, 106
MhlI GDGCHC 1 cut(s) 146
Mly113I GGCGCC 1 cut(s) 120
MlyI GAGTC 2 cut(s) 13, 44
MspI CCGG 3 cut(s) 23, 147, 160
MwoI GCNNNNNNNGC 3 cut(s) 156, 165, 174
NarI GGCGCC 1 cut(s) 120
NdeII GATC 1 cut(s) 180
NlaIII CATG 2 cut(s) 168, 181
NlaIV GGNNCC 2 cut(s) 27, 121
NmuCI GTSAC 1 cut(s) 5
PaeR7I CTCGAG 1 cut(s) 52
PcsI WCGNNNNNNNCGW 2 cut(s) 123, 189
PleI GAGTC 2 cut(s) 13, 44
PluTI GGCGCC 1 cut(s) 123
PpsI GAGTC 2 cut(s) 13, 44
Ppu21I YACGTR 1 cut(s) 32
PspEI GGTNACC 1 cut(s) 5
PspN4I GGNNCC 2 cut(s) 27, 121
PspXI VCTCGAGB 1 cut(s) 52
PstNI CAGNNNCTG 1 cut(s) 174
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
Sau3AI GATC 1 cut(s) 180
ScaI AGTACT 1 cut(s) 155
SchI GAGTC 2 cut(s) 13, 44
SduI GDGCHC 1 cut(s) 146
SetI ASST 2 cut(s) 34, 108
SfoI GGCGCC 1 cut(s) 121
Sfr274I CTCGAG 1 cut(s) 52
SlaI CTCGAG 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SsiI CCGC 1 cut(s) 75
SspDI GGCGCC 1 cut(s) 119
SspMI CTAG 2 cut(s) 47, 107
TaiI ACGT 1 cut(s) 34
TaqI TCGA 2 cut(s) 53, 138
TatI WGTACW 1 cut(s) 153
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 48
TspRI CASTG 1 cut(s) 175
XhoI CTCGAG 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 111
XspI CTAG 2 cut(s) 47, 107
ZrmI AGTACT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.