RLG00000014670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005842
Physical Location & Seq
Forward (+)
56047285 .. 56051120
3836 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014670

Sequence Viewer

Length: 876 bp
ATGGGTCACCAGAGTCCGACTCCGGTGCCACTTAAACACTACTCACTGGACTCGAGTTCATCGGATGACGTCGCCGCAATCAGCAGAGCGAAGAAGAGCCGCTACCCAATAGACGACGACGACAGCGCCGACGGTGATTGGGTTGAGTGCTCCGGCAAGTACTGCCTGTCATGCAGCACCAGCATGATCGCTGATTGCTTGGCATTATGCTGCTGCCCCTGCACTCTGGTCAACTTGTTGACTCTGGCCTTCGTGAAAGTGTTGTGGATGGTTGGTAAGAAGTGCTTGGGGTTAGGCAAGAACAAGAAGAATGAAACCAGAGCCAAGGGCAGAATCGAAAATCTAAAAAAAAAAGTGCAGAAGCAAGAAGAAGCAGGTTACACCCAATGTCCAATTGCATATTGGTTTCGGGTACCTGGCAGTGAAGTAGGAAGTGGCTATTTACCAACTGCAACAGATGCAAATGTTATGGATATGGTTCAATTTATTCCAAGCATTAGAAGATTATTGGATGTGTATATTGTCTGTTTGGGCGAGAGGAAGGTTTTTCAGCCTTGGGAACTAGATGCCTATGATGATGAAGTAGACCATTTGTCATATATTGGGCATGTCATTCATGATCTAGAAGATGATCCAAGACTATTGATGAATGACAGGGTAAATGCACGTGGTGAAAATTTCGCAATTGAGATGCATGCTGAGGATGATCACGTTGATGGGATAAATGCACTTAGTTTAAATTTCCCAATTAAGATGGGATCTGACGATGATCATGTTAATGGGCCAACTATCAACTCTACATTCCAAGAAAATGGAGCTGTATCTATTTCTAATAAGCAAAAAGATAAGGGAAAAAAGAAGATGGAATATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

292

Amino Acids

32.4

Weight (kDa)

5.4

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 72
Acc36I ACCTGC 1 cut(s) 365
Acc65I GGTACC 1 cut(s) 412
AccB1I GGYRCC 2 cut(s) 25, 412
AccI GTMKAC 1 cut(s) 585
AciI CCGC 2 cut(s) 75, 100
AclWI GGATC 2 cut(s) 626, 766
AcsI RAATTY 2 cut(s) 676, 739
AcvI CACGTG 1 cut(s) 668
AcyI GRCGYC 1 cut(s) 69
AdeI CACNNNGTG 1 cut(s) 671
AfaI GTAC 2 cut(s) 161, 414
AgsI TTSAA 1 cut(s) 482
AhdI GACNNNNNGTC 1 cut(s) 592
AjnI CCWGG 1 cut(s) 415
AluBI AGCT 1 cut(s) 818
AluI AGCT 1 cut(s) 818
Alw21I GWGCWC 1 cut(s) 152
AlwI GGATC 2 cut(s) 626, 766
Ama87I CYCGRG 1 cut(s) 52
AoxI GGCC 2 cut(s) 246, 782
ApeKI GCWGC 3 cut(s) 174, 210, 213
ApoI RAATTY 2 cut(s) 676, 739
Asp718I GGTACC 1 cut(s) 412
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 782
AsuHPI GGTGA 2 cut(s) 146, 683
AvaI CYCGRG 1 cut(s) 52
BanI GGYRCC 2 cut(s) 25, 412
BarI GAAGNNNNNNTAC 2 cut(s) 86, 118
BbrPI CACGTG 1 cut(s) 668
Bbv12I GWGCWC 1 cut(s) 152
BbvCI CCTCAGC 1 cut(s) 699
BbvI GCAGC 3 cut(s) 186, 197, 200
BccI CCATC 4 cut(s) 262, 710, 748, 856
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BciT130I CCWGG 1 cut(s) 417
BclI TGATCA 2 cut(s) 706, 769
BfaI CTAG 2 cut(s) 563, 623
BfoI RGCGCY 1 cut(s) 129
BfuAI ACCTGC 1 cut(s) 365
BisI GCNGC 5 cut(s) 75, 100, 175, 211, 214
BlsI GCNGC 5 cut(s) 76, 101, 176, 212, 215
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 417
BmeRI GACNNNNNGTC 1 cut(s) 592
BmeT110I CYCGRG 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 782
BmiI GGNNCC 2 cut(s) 27, 414
BmrFI CCNGG 1 cut(s) 417
BmsI GCATC 3 cut(s) 448, 556, 681
BplI GAGNNNNNCTC 1 cut(s) 36
Bpu10I CCTNAGC 1 cut(s) 699
BsaAI YACGTR 1 cut(s) 668
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 324, 554
BsaWI WCCGGW 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 51
BseBI CCWGG 1 cut(s) 417
BseDI CCNNGG 2 cut(s) 324, 554
BseGI GGATG 4 cut(s) 70, 273, 517, 709
BseMII CTCAG 1 cut(s) 690
BseNI ACTGG 1 cut(s) 51
BseXI GCAGC 3 cut(s) 186, 197, 200
BsgI GTGCAG 2 cut(s) 205, 377
BshFI GGCC 2 cut(s) 248, 784
BshNI GGYRCC 2 cut(s) 25, 412
BsiHKAI GWGCWC 1 cut(s) 152
BsiHKCI CYCGRG 1 cut(s) 52
BsiSI CCGG 2 cut(s) 23, 153
BsnI GGCC 2 cut(s) 248, 784
BsoBI CYCGRG 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 6 cut(s) 186, 619, 631, 706, 758, 769
BspACI CCGC 2 cut(s) 75, 100
BspANI GGCC 2 cut(s) 248, 784
BspCNI CTCAG 1 cut(s) 691
BspHI TCATGA 1 cut(s) 616
BspLI GGNNCC 2 cut(s) 27, 414
BspMI ACCTGC 1 cut(s) 365
BspPI GGATC 2 cut(s) 626, 766
BspQI GCTCTTC 1 cut(s) 89
BspT107I GGYRCC 2 cut(s) 25, 412
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 324, 554
BssMI GATC 6 cut(s) 186, 619, 631, 706, 758, 769
BssNI GRCGYC 1 cut(s) 69
BssT1I CCWWGG 2 cut(s) 324, 554
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 1 cut(s) 134
Bst6I CTCTTC 1 cut(s) 89
BstACI GRCGYC 1 cut(s) 69
BstAPI GCANNNNNTGC 2 cut(s) 162, 458
BstBAI YACGTR 1 cut(s) 668
BstC8I GCNNGC 1 cut(s) 696
BstDEI CTNAG 3 cut(s) 699, 731, 873
BstEII GGTNACC 1 cut(s) 5
BstF5I GGATG 4 cut(s) 70, 273, 517, 709
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 6 cut(s) 189, 622, 634, 709, 761, 772
BstMBI GATC 6 cut(s) 186, 619, 631, 706, 758, 769
BstMWI GCNNNNNNNGC 5 cut(s) 162, 171, 180, 219, 458
BstNI CCWGG 1 cut(s) 417
BstNSI RCATGY 2 cut(s) 611, 698
BstPI GGTNACC 1 cut(s) 5
BstSCI CCNGG 1 cut(s) 415
BstV1I GCAGC 3 cut(s) 186, 197, 200
BstX2I RGATCY 1 cut(s) 758
BstXI CCANNNNNNTGG 1 cut(s) 812
BstYI RGATCY 1 cut(s) 758
BsuRI GGCC 2 cut(s) 248, 784
BtsCI GGATG 4 cut(s) 70, 273, 517, 709
BtsI GCAGTG 1 cut(s) 427
BtsIMutI CAGTG 2 cut(s) 44, 427
BveI ACCTGC 1 cut(s) 365
Cac8I GCNNGC 1 cut(s) 696
CciI TCATGA 1 cut(s) 616
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 782
Csp6I GTAC 2 cut(s) 160, 413
CviAII CATG 6 cut(s) 171, 184, 608, 617, 695, 773
CviJI RGCY 7 cut(s) 99, 248, 323, 438, 553, 784, 818
CviKI_1 RGCY 7 cut(s) 99, 248, 323, 438, 553, 784, 818
CviQI GTAC 2 cut(s) 160, 413
DdeI CTNAG 3 cut(s) 699, 731, 873
DpnI GATC 6 cut(s) 188, 621, 633, 708, 760, 771
DpnII GATC 6 cut(s) 186, 619, 631, 706, 758, 769
DraI TTTAAA 1 cut(s) 738
DraIII CACNNNGTG 1 cut(s) 671
DriI GACNNNNNGTC 1 cut(s) 592
Eam1104I CTCTTC 1 cut(s) 89
Eam1105I GACNNNNNGTC 1 cut(s) 592
EarI CTCTTC 1 cut(s) 89
Eco130I CCWWGG 2 cut(s) 324, 554
Eco72I CACGTG 1 cut(s) 668
Eco88I CYCGRG 1 cut(s) 52
Eco91I GGTNACC 1 cut(s) 5
EcoO65I GGTNACC 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 415
EcoT14I CCWWGG 2 cut(s) 324, 554
EcoT22I ATGCAT 1 cut(s) 696
ErhI CCWWGG 2 cut(s) 324, 554
FaeI CATG 6 cut(s) 174, 187, 611, 620, 698, 776
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FatI CATG 6 cut(s) 170, 183, 607, 616, 694, 772
FbaI TGATCA 2 cut(s) 706, 769
FblI GTMKAC 1 cut(s) 585
Fnu4HI GCNGC 5 cut(s) 75, 100, 175, 211, 214
FokI GGATG 4 cut(s) 77, 280, 524, 716
Fsp4HI GCNGC 5 cut(s) 75, 100, 175, 211, 214
FspBI CTAG 2 cut(s) 563, 623
GlaI GCGC 1 cut(s) 127
GluI GCNGC 5 cut(s) 75, 100, 175, 211, 214
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 2 cut(s) 248, 784
HapII CCGG 2 cut(s) 23, 153
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 6 cut(s) 174, 187, 611, 620, 698, 776
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 2 cut(s) 232, 240
HindII GTYRAC 2 cut(s) 232, 240
HinfI GANTC 5 cut(s) 13, 19, 50, 241, 333
HpaII CCGG 2 cut(s) 23, 153
HphI GGTGA 2 cut(s) 146, 683
Hpy166II GTNNAC 3 cut(s) 232, 240, 586
Hpy188I TCNGA 3 cut(s) 18, 64, 763
Hpy188III TCNNGA 3 cut(s) 253, 617, 623
Hpy8I GTNNAC 3 cut(s) 232, 240, 586
Hpy99I CGWCG 4 cut(s) 74, 119, 122, 134
HpyAV CCTTC 2 cut(s) 259, 535
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 3 cut(s) 69, 667, 711
HpyCH4V TGCA 9 cut(s) 174, 222, 358, 398, 452, 461, 665, 694, 728
HpyF10VI GCNNNNNNNGC 5 cut(s) 162, 171, 180, 219, 458
HpyF3I CTNAG 3 cut(s) 699, 731, 873
HpySE526I ACGT 3 cut(s) 69, 667, 711
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 6 cut(s) 174, 187, 611, 620, 698, 776
HspAI GCGC 1 cut(s) 126
KpnI GGTACC 1 cut(s) 416
Ksp22I TGATCA 2 cut(s) 706, 769
Kzo9I GATC 6 cut(s) 186, 619, 631, 706, 758, 769
LguI GCTCTTC 1 cut(s) 89
LmnI GCTCC 2 cut(s) 155, 815
Lsp1109I GCAGC 3 cut(s) 186, 197, 200
LweI GCATC 3 cut(s) 448, 556, 681
MaeI CTAG 2 cut(s) 563, 623
MaeII ACGT 3 cut(s) 69, 667, 711
MaeIII GTNAC 2 cut(s) 5, 377
MalI GATC 6 cut(s) 188, 621, 633, 708, 760, 771
MboI GATC 6 cut(s) 186, 619, 631, 706, 758, 769
MboII GAAGA 7 cut(s) 103, 106, 319, 380, 513, 638, 871
MfeI CAATTG 2 cut(s) 393, 684
MflI RGATCY 1 cut(s) 758
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 6 cut(s) 393, 482, 676, 684, 739, 747
MlyI GAGTC 4 cut(s) 13, 22, 44, 235
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 2 cut(s) 531, 694
Mph1103I ATGCAT 1 cut(s) 696
MseI TTAA 4 cut(s) 33, 737, 750, 777
MslI CAYNNNNRTG 3 cut(s) 182, 714, 777
MspI CCGG 2 cut(s) 23, 153
MspR9I CCNGG 1 cut(s) 417
MunI CAATTG 2 cut(s) 393, 684
MvaI CCWGG 1 cut(s) 417
MwoI GCNNNNNNNGC 5 cut(s) 162, 171, 180, 219, 458
NdeII GATC 6 cut(s) 186, 619, 631, 706, 758, 769
NlaIII CATG 6 cut(s) 174, 187, 611, 620, 698, 776
NlaIV GGNNCC 2 cut(s) 27, 414
NmuCI GTSAC 1 cut(s) 5
NsiI ATGCAT 1 cut(s) 696
NspI RCATGY 2 cut(s) 611, 698
PaeI GCATGC 1 cut(s) 698
PaeR7I CTCGAG 1 cut(s) 52
PagI TCATGA 1 cut(s) 616
PciSI GCTCTTC 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 1 cut(s) 333
PkrI GCNGC 5 cut(s) 76, 101, 176, 212, 215
PleI GAGTC 4 cut(s) 13, 21, 44, 235
PmaCI CACGTG 1 cut(s) 668
PmlI CACGTG 1 cut(s) 668
PpsI GAGTC 4 cut(s) 13, 21, 44, 235
Ppu21I YACGTR 1 cut(s) 668
Psp6I CCWGG 1 cut(s) 415
PspCI CACGTG 1 cut(s) 668
PspEI GGTNACC 1 cut(s) 5
PspGI CCWGG 1 cut(s) 415
PspN4I GGNNCC 2 cut(s) 27, 414
PspPI GGNCC 1 cut(s) 782
PspXI VCTCGAGB 1 cut(s) 52
PsuI RGATCY 1 cut(s) 758
RsaI GTAC 2 cut(s) 161, 414
RsaNI GTAC 2 cut(s) 160, 413
RseI CAYNNNNRTG 3 cut(s) 182, 714, 777
SapI GCTCTTC 1 cut(s) 89
SaqAI TTAA 4 cut(s) 33, 737, 750, 777
SatI GCNGC 5 cut(s) 75, 100, 175, 211, 214
Sau3AI GATC 6 cut(s) 186, 619, 631, 706, 758, 769
Sau96I GGNCC 1 cut(s) 782
ScaI AGTACT 1 cut(s) 161
SchI GAGTC 4 cut(s) 13, 22, 44, 235
ScrFI CCNGG 1 cut(s) 417
SduI GDGCHC 1 cut(s) 152
SetI ASST 7 cut(s) 72, 379, 418, 546, 670, 714, 820
SfaNI GCATC 3 cut(s) 448, 556, 681
Sfr274I CTCGAG 1 cut(s) 52
SlaI CTCGAG 1 cut(s) 52
SmiMI CAYNNNNRTG 3 cut(s) 182, 714, 777
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SphI GCATGC 1 cut(s) 698
Sse9I AATT 6 cut(s) 393, 482, 676, 684, 739, 747
SsiI CCGC 2 cut(s) 75, 100
SspMI CTAG 2 cut(s) 563, 623
StyD4I CCNGG 1 cut(s) 415
StyI CCWWGG 2 cut(s) 324, 554
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 3 cut(s) 72, 670, 714
TaqI TCGA 2 cut(s) 53, 336
TasI AATT 6 cut(s) 393, 482, 676, 684, 739, 747
TatI WGTACW 1 cut(s) 159
TauI GCSGC 2 cut(s) 77, 102
TfiI GAWTC 1 cut(s) 333
Tru1I TTAA 4 cut(s) 33, 737, 750, 777
Tru9I TTAA 4 cut(s) 33, 737, 750, 777
TscAI CASTG 2 cut(s) 51, 427
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 3 cut(s) 174, 210, 213
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 5 cut(s) 48, 327, 594, 605, 662
TspRI CASTG 2 cut(s) 51, 427
XapI RAATTY 2 cut(s) 676, 739
XbaI TCTAGA 1 cut(s) 622
XceI RCATGY 2 cut(s) 611, 698
XcmI CCANNNNNNNNNTGG 1 cut(s) 399
XhoI CTCGAG 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 585
XspI CTAG 2 cut(s) 563, 623
ZraI GACGTC 1 cut(s) 70
ZrmI AGTACT 1 cut(s) 161
Zsp2I ATGCAT 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.