AT3G01600
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006146
Physical Location & Seq
Forward (+)
229075 .. 231517
2443 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G01600.1

Sequence Viewer

Length: 1101 bp
ATGGCGAGGGCTTGGATTGTCGATGGTCGAGGAATTGCAGCCAAAGTTAAAAATGCCTCTCTTTCTTCAGCTTTGCAGATCCAAGACTGTGGAGCTCATATAAAATGCCCCAACTGCACTTACCGCATTGACAATAGCAATGTACTGATTCCATGGCCTGGCCTTCCTAAAGGTGTCAAGTTTGAGCCAACTGATGAGGACATTATCGAATTTTTGGAAGCTAAATGTGGGATTGGTGGCTCTGAACCTCATGTGCTTATCGAAGAGTTCATTCGTCCTGTCACTGAAGATGTTGGAATCAATTACACTCACCCTCAAAACCTTCCTGGTGCAAACAAAGATGGAGTGAGTGTCTTCTTCTTTCACAAGACAGTGCAGGCATATGGAACAGGACAGAGGAAACGCAGAAAGATCACACCGACACTTGTGAACGATGAACCAGTTCGTTGGCACAAGACAGGCAGAACCAAACCTGTGATGCTCAGTGGAGTCCAAAGGGGTTGCAAGAAGATCATGGTGCTCTACAAGAGCGCTAGAAAGGGAACGAAGCCCGAGAAATCAAACTGGGTTCTGCATCAATACCATCTAGGAACAGAAGGAAAGGAGATAGGAGACTATGTTGTTTCCAAGATCACATATCAGCAGCAGAAGCTTGGGGAAAATCCTGATGAAGGTGAGAGTAGTTCCGGGGTTAGAGGTGGCCCAACAACACCAAAGACGAATACTCCTACACCACCTAGCCTTGTAGATGGTGTCGCTGGAGATGAAGAAGCTTTTGATGATTTAAAGATGTTTGATCCATTTTTTGAGGAACTGGACAGCATTCCTGAAGCTGCTTTAGGGAAGATGTGGTCCAAAAAAGCTCGAATGGATGAGGAATTTGTTGTGAACCTAAGTGAAGATAACTTAATATGCGACGAAAGCATGGAAGCTTCGTCTCTTTGGGAAAATCAGGTTCTCCCCAATCCTAGCCTTGGAACTGTTGGGGACTTCGATGGTTTTTCGATATCAGATCTGGAGAATGCAGATTTGGGGACTCCCCCTGATTTCCTCACTTTGGCTTCTCAGGAGAGCTTGCTGAATTGGATTGGATGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

366

Amino Acids

40.41

Weight (kDa)

5.12

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 56 - 196 1.5e-21 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 158
AciI CCGC 1 cut(s) 124
AclWI GGATC 2 cut(s) 73, 791
AcsI RAATTY 2 cut(s) 209, 878
AcuI CTGAAG 3 cut(s) 51, 306, 849
AfaI GTAC 1 cut(s) 144
AfeI AGCGCT 1 cut(s) 532
AfiI CCNNNNNNNGG 4 cut(s) 158, 671, 974, 1057
AjnI CCWGG 2 cut(s) 157, 325
AjuI GAANNNNNNNTTGG 2 cut(s) 1013, 1045
AluBI AGCT 9 cut(s) 71, 95, 221, 652, 773, 833, 863, 932, 1074
AluI AGCT 9 cut(s) 71, 95, 221, 652, 773, 833, 863, 932, 1074
Alw21I GWGCWC 2 cut(s) 97, 522
Alw26I GTCTC 2 cut(s) 606, 942
AlwI GGATC 2 cut(s) 73, 791
Ama87I CYCGRG 1 cut(s) 551
Aor51HI AGCGCT 1 cut(s) 532
AoxI GGCC 3 cut(s) 155, 160, 700
ApeKI GCWGC 3 cut(s) 38, 643, 833
ApoI RAATTY 2 cut(s) 209, 878
Asp700I GAANNNNTTC 1 cut(s) 441
AspLEI GCGC 1 cut(s) 533
AspS9I GGNCC 2 cut(s) 701, 852
AsuC2I CCSGG 1 cut(s) 688
AsuHPI GGTGA 2 cut(s) 302, 686
AvaI CYCGRG 1 cut(s) 551
AvaII GGWCC 1 cut(s) 852
BanII GRGCYC 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 346
Bbv12I GWGCWC 2 cut(s) 97, 522
BbvI GCAGC 3 cut(s) 50, 655, 820
BccI CCATC 6 cut(s) 17, 335, 591, 743, 989, 1086
BciT130I CCWGG 2 cut(s) 159, 327
BcnI CCSGG 1 cut(s) 688
BcoDI GTCTC 2 cut(s) 606, 942
BfaI CTAG 4 cut(s) 534, 587, 738, 969
BfoI RGCGCY 1 cut(s) 534
BglII AGATCT 1 cut(s) 1012
BisI GCNGC 3 cut(s) 39, 644, 834
BlsI GCNGC 3 cut(s) 40, 645, 835
Bme1390I CCNGG 3 cut(s) 159, 327, 688
Bme18I GGWCC 1 cut(s) 852
BmeT110I CYCGRG 1 cut(s) 551
BmgT120I GGNCC 2 cut(s) 701, 852
BmrFI CCNGG 3 cut(s) 159, 327, 688
BmrI ACTGGG 1 cut(s) 574
BmsI GCATC 2 cut(s) 468, 583
BmuI ACTGGG 1 cut(s) 574
BpiI GAAGAC 1 cut(s) 346
BpmI CTGGAG 2 cut(s) 780, 1037
BpuMI CCSGG 1 cut(s) 688
BsaJI CCNNGG 3 cut(s) 152, 687, 973
BsaXI ACNNNNNCTCC 6 cut(s) 336, 366, 603, 633, 709, 739
Bsc4I CCNNNNNNNGG 4 cut(s) 158, 671, 974, 1057
Bse1I ACTGG 3 cut(s) 440, 569, 819
Bse3DI GCAATG 1 cut(s) 145
BseBI CCWGG 2 cut(s) 159, 327
BseDI CCNNGG 3 cut(s) 152, 687, 973
BseGI GGATG 2 cut(s) 877, 1097
BseLI CCNNNNNNNGG 4 cut(s) 158, 671, 974, 1057
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 2 cut(s) 496, 1079
BseNI ACTGG 3 cut(s) 440, 569, 819
BseXI GCAGC 3 cut(s) 50, 655, 820
BsgI GTGCAG 2 cut(s) 100, 395
BshFI GGCC 3 cut(s) 157, 162, 702
BsiHKAI GWGCWC 2 cut(s) 97, 522
BsiHKCI CYCGRG 1 cut(s) 551
BsiSI CCGG 1 cut(s) 687
BslFI GGGAC 2 cut(s) 1001, 1048
BslI CCNNNNNNNGG 4 cut(s) 158, 671, 974, 1057
BsmAI GTCTC 2 cut(s) 606, 942
BsmBI CGTCTC 1 cut(s) 942
BsmFI GGGAC 2 cut(s) 1001, 1048
BsmI GAATGC 2 cut(s) 822, 1027
BsnI GGCC 3 cut(s) 157, 162, 702
BsoBI CYCGRG 1 cut(s) 551
Bsp1286I GDGCHC 2 cut(s) 97, 522
Bsp143I GATC 6 cut(s) 78, 411, 510, 630, 796, 1012
Bsp19I CCATGG 1 cut(s) 152
BspACI CCGC 1 cut(s) 124
BspANI GGCC 3 cut(s) 157, 162, 702
BspCNI CTCAG 2 cut(s) 495, 1078
BspPI GGATC 2 cut(s) 73, 791
BsrDI GCAATG 1 cut(s) 145
BsrI ACTGG 3 cut(s) 440, 569, 819
BssECI CCNNGG 3 cut(s) 152, 687, 973
BssMI GATC 6 cut(s) 78, 411, 510, 630, 796, 1012
BssT1I CCWWGG 2 cut(s) 152, 973
Bst2UI CCWGG 2 cut(s) 159, 327
Bst4CI ACNGT 3 cut(s) 89, 373, 982
Bst6I CTCTTC 1 cut(s) 258
BstC8I GCNNGC 2 cut(s) 378, 1076
BstDEI CTNAG 3 cut(s) 482, 893, 1065
BstDSI CCRYGG 1 cut(s) 152
BstENI CCTNNNNNAGG 1 cut(s) 669
BstF5I GGATG 2 cut(s) 877, 1097
BstH2I RGCGCY 1 cut(s) 534
BstHHI GCGC 1 cut(s) 533
BstKTI GATC 6 cut(s) 81, 414, 513, 633, 799, 1015
BstMAI GTCTC 2 cut(s) 606, 942
BstMBI GATC 6 cut(s) 78, 411, 510, 630, 796, 1012
BstMWI GCNNNNNNNGC 4 cut(s) 114, 123, 649, 921
BstNI CCWGG 2 cut(s) 159, 327
BstSCI CCNGG 3 cut(s) 157, 325, 686
BstV1I GCAGC 3 cut(s) 50, 655, 820
BstV2I GAAGAC 1 cut(s) 346
BstX2I RGATCY 2 cut(s) 78, 1012
BstXI CCANNNNNNTGG 2 cut(s) 89, 447
BstYI RGATCY 2 cut(s) 78, 1012
BsuRI GGCC 3 cut(s) 157, 162, 702
BtgI CCRYGG 1 cut(s) 152
BtsCI GGATG 2 cut(s) 877, 1097
BtsIMutI CAGTG 3 cut(s) 282, 378, 490
Cac8I GCNNGC 2 cut(s) 378, 1076
CfoI GCGC 1 cut(s) 533
Cfr13I GGNCC 2 cut(s) 701, 852
Csp6I GTAC 1 cut(s) 143
CviAII CATG 4 cut(s) 153, 251, 514, 925
CviQI GTAC 1 cut(s) 143
DdeI CTNAG 3 cut(s) 482, 893, 1065
DpnI GATC 6 cut(s) 80, 413, 512, 632, 798, 1014
DpnII GATC 6 cut(s) 78, 411, 510, 630, 796, 1012
DraI TTTAAA 1 cut(s) 786
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Ecl136II GAGCTC 1 cut(s) 95
Eco130I CCWWGG 2 cut(s) 152, 973
Eco24I GRGCYC 1 cut(s) 97
Eco32I GATATC 1 cut(s) 1008
Eco47I GGWCC 1 cut(s) 852
Eco47III AGCGCT 1 cut(s) 532
Eco53kI GAGCTC 1 cut(s) 95
Eco57I CTGAAG 3 cut(s) 51, 306, 849
Eco88I CYCGRG 1 cut(s) 551
EcoICRI GAGCTC 1 cut(s) 95
EcoNI CCTNNNNNAGG 1 cut(s) 669
EcoRII CCWGG 2 cut(s) 157, 325
EcoRV GATATC 1 cut(s) 1008
EcoT14I CCWWGG 2 cut(s) 152, 973
EcoT38I GRGCYC 1 cut(s) 97
ErhI CCWWGG 2 cut(s) 152, 973
Esp3I CGTCTC 1 cut(s) 942
FaeI CATG 4 cut(s) 156, 254, 517, 928
FaqI GGGAC 2 cut(s) 1001, 1048
FatI CATG 4 cut(s) 152, 250, 513, 924
FauNDI CATATG 1 cut(s) 382
Fnu4HI GCNGC 3 cut(s) 39, 644, 834
FokI GGATG 1 cut(s) 884
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 3 cut(s) 39, 644, 834
FspBI CTAG 4 cut(s) 534, 587, 738, 969
GlaI GCGC 1 cut(s) 532
GluI GCNGC 3 cut(s) 39, 644, 834
GsuI CTGGAG 2 cut(s) 780, 1037
HaeII RGCGCY 1 cut(s) 534
HaeIII GGCC 3 cut(s) 157, 162, 702
HapII CCGG 1 cut(s) 687
HhaI GCGC 1 cut(s) 533
Hin1II CATG 4 cut(s) 156, 254, 517, 928
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HindIII AAGCTT 3 cut(s) 650, 771, 930
HinfI GANTC 4 cut(s) 148, 297, 489, 1036
HpaII CCGG 1 cut(s) 687
HphI GGTGA 2 cut(s) 302, 686
Hpy166II GTNNAC 2 cut(s) 430, 889
Hpy188I TCNGA 2 cut(s) 244, 1012
Hpy188III TCNNGA 4 cut(s) 665, 827, 1016, 1067
Hpy8I GTNNAC 2 cut(s) 430, 889
Hpy99I CGWCG 1 cut(s) 920
HpyAV CCTTC 4 cut(s) 173, 332, 590, 665
HpyCH4III ACNGT 3 cut(s) 89, 373, 982
HpyCH4V TGCA 8 cut(s) 38, 76, 117, 332, 376, 504, 574, 1025
HpyF10VI GCNNNNNNNGC 4 cut(s) 114, 123, 649, 921
HpyF3I CTNAG 3 cut(s) 482, 893, 1065
Hsp92II CATG 4 cut(s) 156, 254, 517, 928
HspAI GCGC 1 cut(s) 531
Kzo9I GATC 6 cut(s) 78, 411, 510, 630, 796, 1012
LmnI GCTCC 1 cut(s) 92
Lsp1109I GCAGC 3 cut(s) 50, 655, 820
LweI GCATC 2 cut(s) 468, 583
MaeI CTAG 4 cut(s) 534, 587, 738, 969
MaeIII GTNAC 1 cut(s) 280
MalI GATC 6 cut(s) 80, 413, 512, 632, 798, 1014
MboI GATC 6 cut(s) 78, 411, 510, 630, 796, 1012
MboII GAAGA 9 cut(s) 57, 275, 299, 346, 349, 520, 779, 856, 911
MflI RGATCY 2 cut(s) 78, 1012
MhlI GDGCHC 2 cut(s) 97, 522
MluCI AATT 5 cut(s) 33, 209, 301, 878, 1081
MlyI GAGTC 2 cut(s) 498, 1030
MmeI TCCRAC 1 cut(s) 274
MroXI GAANNNNTTC 1 cut(s) 441
MseI TTAA 3 cut(s) 48, 785, 908
MspI CCGG 1 cut(s) 687
MspR9I CCNGG 3 cut(s) 159, 327, 688
Mva1269I GAATGC 2 cut(s) 822, 1027
MvaI CCWGG 2 cut(s) 159, 327
MwoI GCNNNNNNNGC 4 cut(s) 114, 123, 649, 921
NciI CCSGG 1 cut(s) 688
NcoI CCATGG 1 cut(s) 152
NdeI CATATG 1 cut(s) 382
NdeII GATC 6 cut(s) 78, 411, 510, 630, 796, 1012
NlaIII CATG 4 cut(s) 156, 254, 517, 928
NmuCI GTSAC 1 cut(s) 280
PctI GAATGC 2 cut(s) 822, 1027
PdmI GAANNNNTTC 1 cut(s) 441
PfeI GAWTC 2 cut(s) 148, 297
PflMI CCANNNNNTGG 1 cut(s) 158
PkrI GCNGC 3 cut(s) 40, 645, 835
PleI GAGTC 2 cut(s) 497, 1030
PpsI GAGTC 2 cut(s) 497, 1030
Psp124BI GAGCTC 1 cut(s) 97
Psp6I CCWGG 2 cut(s) 157, 325
PspGI CCWGG 2 cut(s) 157, 325
PspPI GGNCC 2 cut(s) 701, 852
PsuI RGATCY 2 cut(s) 78, 1012
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
SacI GAGCTC 1 cut(s) 97
SaqAI TTAA 3 cut(s) 48, 785, 908
SatI GCNGC 3 cut(s) 39, 644, 834
Sau3AI GATC 6 cut(s) 78, 411, 510, 630, 796, 1012
Sau96I GGNCC 2 cut(s) 701, 852
SchI GAGTC 2 cut(s) 498, 1030
ScrFI CCNGG 3 cut(s) 159, 327, 688
SduI GDGCHC 2 cut(s) 97, 522
SfaNI GCATC 2 cut(s) 468, 583
SinI GGWCC 1 cut(s) 852
Sse9I AATT 5 cut(s) 33, 209, 301, 878, 1081
SsiI CCGC 1 cut(s) 124
SspMI CTAG 4 cut(s) 534, 587, 738, 969
SstI GAGCTC 1 cut(s) 97
StyD4I CCNGG 3 cut(s) 157, 325, 686
StyI CCWWGG 2 cut(s) 152, 973
TaaI ACNGT 3 cut(s) 89, 373, 982
TaqI TCGA 7 cut(s) 21, 28, 207, 261, 865, 993, 1004
TasI AATT 5 cut(s) 33, 209, 301, 878, 1081
TatI WGTACW 1 cut(s) 142
TfiI GAWTC 2 cut(s) 148, 297
Tru1I TTAA 3 cut(s) 48, 785, 908
Tru9I TTAA 3 cut(s) 48, 785, 908
TscAI CASTG 3 cut(s) 289, 378, 490
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 3 cut(s) 38, 643, 833
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 4 cut(s) 259, 450, 684, 780
TspRI CASTG 3 cut(s) 289, 378, 490
Van91I CCANNNNNTGG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 852
XagI CCTNNNNNAGG 1 cut(s) 669
XapI RAATTY 2 cut(s) 209, 878
XmnI GAANNNNTTC 1 cut(s) 441
XspI CTAG 4 cut(s) 534, 587, 738, 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.