Rh2BG657100
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0006146
Physical Location & Seq
Forward (+)
87381674 .. 87385296
3623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG657100.1

Sequence Viewer

Length: 1341 bp
ATGGTTCATGTTTGCGGAGTTTCATTAATTTGTCTTCCAATGTGGTTTCTCTGTTGGTTACTTTATCTTGTTACTGAAAACTGTAATGTAATTGAAATTGAGGCTAATGCAGTATATAATTCTTGTAGGGCTTGGCTGATCAACAGCAGAGGATTTGCAAACAAAGTCAAAAACTGTGCTTCTCAAATCAAAGACTGTGGGGCAAGTCGCGAGTGTCCAAAATGCCATTATCTTATCAGCAACAGCGATGTTTCAACAGAATGGCCTGGCTTTCCGACTGGTGTGAAGTTTGATCCATCTGATACTGATCTCATAGAACATTTAGCTGCGAAAGTTGGTGTTGGAAACTCAAAACCACACATGTTTATTGATGAGTTCATCCCAACTATTGATTGGGATATCGGCATTTGCTACACTCATCCTGAAAACCTTCCTGGTGCAAAGAAAGATGGAAGTAGCTTCCATTTCTTTCATAAAACATGTAATGCATATTCTACTGGTCGGCGGAAGCGTCGCAAGATTGACAAAGAGCATGACTTAGCCGCACAGGCTGTTCGTTGGCACAAGACCGGGAAGACCAAGGCTATAAGAAGTGGAGTTCATCCGGGCTGGAAGAAGATCATGGTGCTGTATAAAAGTTCAATCAAAGGCTCCAAAGCAGATAAGACTGACTGGGTGATGCATCAGTATCATTTGGGAAGTACAGAAGATGAGAAAGAAGGTGAATATGTGGTGTCGAAGATATTCTATCAACAGCCAAAGCAGGCTGACAAGAATGATCACAATTTGGTCATTGAAGAATCTGAATCCTATGTGCTTCAACGTTCTCCAATTACCCCCATAACAAATCCTCCGACTACTCCTGCACCAGAGGAATCTGCTTGGTGTGATGCTGGTCCTGACGAATATATGCAGAATTCCTATGCCAAGGTAGCAGAACATGTCCCGGAAGTATCTCAATATGCCCAACTTAGGAAGTTCGAGGACAGTATGTCTCATGTCCCTCAACTTGATAGTCAGTTTGAGAACAATGTGGGGCAACCTACCTGGTTGGCAGGCGAATCTCAGGTTGATGAATACTGCGGGTTAAATTGCTTCGATGACACCTTGTTATGCAAGGAGACATTTAATTCTTCCACTCCTCTAAATGGTCCAGTTCTGAATCCCATATCCAACAGTGACTGTGTTAACAACACGTACGGGGTGACTGGAAACAGCAGCACAGCATTTGGAATCCCTGACCTTGAGAACCTCGAGTTTGATAGTCCACCACATTTCCAGCTAACTGGTTTGCAGTTTTGTTCCCAAGACAGTATACTTGAGTGGTTGGACAGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

446

Amino Acids

50.16

Weight (kDa)

5.45

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 92 - 232 2e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1315
AccII CGCG 1 cut(s) 210
AciI CCGC 4 cut(s) 15, 505, 543, 1083
AclI AACGTT 1 cut(s) 823
AclWI GGATC 1 cut(s) 287
AcsI RAATTY 1 cut(s) 916
AfaI GTAC 2 cut(s) 703, 1199
AfiI CCNNNNNNNGG 2 cut(s) 972, 1148
AflIII ACRYGT 4 cut(s) 360, 479, 940, 1194
AgsI TTSAA 5 cut(s) 95, 255, 642, 797, 821
AhdI GACNNNNNGTC 1 cut(s) 991
AjnI CCWGG 3 cut(s) 265, 433, 1046
AluBI AGCT 3 cut(s) 326, 459, 1282
AluI AGCT 3 cut(s) 326, 459, 1282
Alw26I GTCTC 2 cut(s) 999, 1115
AlwI GGATC 1 cut(s) 287
AlwNI CAGNNNCTG 1 cut(s) 1182
Ama87I CYCGRG 1 cut(s) 1253
AoxI GGCC 1 cut(s) 263
ApeKI GCWGC 2 cut(s) 326, 1218
ApoI RAATTY 1 cut(s) 916
AseI ATTAAT 1 cut(s) 26
Asp700I GAANNNNTTC 2 cut(s) 429, 743
AspS9I GGNCC 2 cut(s) 896, 1151
AsuC2I CCSGG 3 cut(s) 571, 606, 947
AsuHPI GGTGA 3 cut(s) 688, 734, 1216
AvaI CYCGRG 1 cut(s) 1253
AvaII GGWCC 2 cut(s) 896, 1151
BbsI GAAGAC 2 cut(s) 26, 581
BbvI GCAGC 2 cut(s) 313, 1230
BccI CCATC 2 cut(s) 304, 443
BciT130I CCWGG 3 cut(s) 267, 435, 1048
BclI TGATCA 2 cut(s) 138, 778
BcnI CCSGG 3 cut(s) 571, 606, 947
BcoDI GTCTC 2 cut(s) 999, 1115
BglI GCCNNNNNGGC 1 cut(s) 548
BisI GCNGC 3 cut(s) 327, 543, 1219
BlsI GCNGC 3 cut(s) 328, 544, 1220
Bme1390I CCNGG 6 cut(s) 267, 435, 571, 606, 947, 1048
Bme18I GGWCC 2 cut(s) 896, 1151
BmeRI GACNNNNNGTC 1 cut(s) 991
BmeT110I CYCGRG 1 cut(s) 1253
BmgT120I GGNCC 2 cut(s) 896, 1151
BmiI GGNNCC 1 cut(s) 652
BmrFI CCNGG 6 cut(s) 267, 435, 571, 606, 947, 1048
BmrI ACTGGG 1 cut(s) 682
BmsI GCATC 3 cut(s) 669, 691, 880
BmuI ACTGGG 1 cut(s) 682
BpiI GAAGAC 2 cut(s) 26, 581
BpuEI CTTGAG 2 cut(s) 1265, 1340
BpuMI CCSGG 3 cut(s) 571, 606, 947
BsaAI YACGTR 1 cut(s) 1197
BsaBI GATNNNNATC 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 579, 927
BsaXI ACNNNNNCTCC 2 cut(s) 835, 865
Bsc4I CCNNNNNNNGG 2 cut(s) 972, 1148
Bse1I ACTGG 6 cut(s) 283, 502, 677, 1154, 1213, 1291
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 3 cut(s) 267, 435, 1048
BseDI CCNNGG 2 cut(s) 579, 927
BseGI GGATG 3 cut(s) 378, 418, 601
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 2 cut(s) 972, 1148
BseMII CTCAG 1 cut(s) 1079
BseNI ACTGG 6 cut(s) 283, 502, 677, 1154, 1213, 1291
BseRI GAGGAG 1 cut(s) 1131
BseXI GCAGC 2 cut(s) 313, 1230
BsgI GTGCAG 1 cut(s) 849
Bsh1236I CGCG 1 cut(s) 210
BshFI GGCC 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 1253
BsiSI CCGG 3 cut(s) 570, 605, 947
BsiWI CGTACG 1 cut(s) 1197
BslFI GGGAC 2 cut(s) 929, 986
BslI CCNNNNNNNGG 2 cut(s) 972, 1148
BsmAI GTCTC 2 cut(s) 999, 1115
BsmFI GGGAC 2 cut(s) 929, 986
BsnI GGCC 1 cut(s) 265
BsoBI CYCGRG 1 cut(s) 1253
Bsp143I GATC 5 cut(s) 138, 292, 307, 618, 778
Bsp68I TCGCGA 1 cut(s) 210
BspACI CCGC 4 cut(s) 15, 505, 543, 1083
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 1 cut(s) 1078
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 652
BspPI GGATC 1 cut(s) 287
BsrI ACTGG 6 cut(s) 283, 502, 677, 1154, 1213, 1291
BssECI CCNNGG 2 cut(s) 579, 927
BssMI GATC 5 cut(s) 138, 292, 307, 618, 778
BssNAI GTATAC 1 cut(s) 1316
BssT1I CCWWGG 2 cut(s) 579, 927
Bst1107I GTATAC 1 cut(s) 1316
Bst2UI CCWGG 3 cut(s) 267, 435, 1048
Bst4CI ACNGT 7 cut(s) 83, 176, 197, 989, 1178, 1184, 1313
BstBAI YACGTR 1 cut(s) 1197
BstC8I GCNNGC 2 cut(s) 765, 1057
BstDEI CTNAG 3 cut(s) 538, 971, 1065
BstF5I GGATG 3 cut(s) 378, 418, 601
BstFNI CGCG 1 cut(s) 210
BstKTI GATC 5 cut(s) 141, 295, 310, 621, 781
BstMAI GTCTC 2 cut(s) 999, 1115
BstMBI GATC 5 cut(s) 138, 292, 307, 618, 778
BstMWI GCNNNNNNNGC 2 cut(s) 548, 932
BstNI CCWGG 3 cut(s) 267, 435, 1048
BstNSI RCATGY 3 cut(s) 364, 483, 944
BstSCI CCNGG 6 cut(s) 265, 433, 569, 604, 945, 1046
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 2 cut(s) 313, 1230
BstV2I GAAGAC 2 cut(s) 26, 581
BstXI CCANNNNNNTGG 1 cut(s) 1286
BstZ17I GTATAC 1 cut(s) 1316
BsuRI GGCC 1 cut(s) 265
BtgZI GCGATG 1 cut(s) 261
BtsCI GGATG 3 cut(s) 378, 418, 601
BtsIMutI CAGTG 1 cut(s) 1183
BtuMI TCGCGA 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 765, 1057
CaiI CAGNNNCTG 1 cut(s) 1182
Cfr13I GGNCC 2 cut(s) 896, 1151
CseI GACGC 1 cut(s) 500
CsiI ACCWGGT 1 cut(s) 1046
Csp6I GTAC 2 cut(s) 702, 1198
CspCI CAANNNNNGTGG 2 cut(s) 178, 213
CviAII CATG 7 cut(s) 8, 361, 480, 533, 622, 941, 998
CviQI GTAC 2 cut(s) 702, 1198
DdeI CTNAG 3 cut(s) 538, 971, 1065
DpnI GATC 5 cut(s) 140, 294, 309, 620, 780
DpnII GATC 5 cut(s) 138, 292, 307, 618, 778
DriI GACNNNNNGTC 1 cut(s) 991
Eam1105I GACNNNNNGTC 1 cut(s) 991
EciI GGCGGA 1 cut(s) 520
Eco130I CCWWGG 2 cut(s) 579, 927
Eco32I GATATC 1 cut(s) 400
Eco47I GGWCC 2 cut(s) 896, 1151
Eco88I CYCGRG 1 cut(s) 1253
EcoRI GAATTC 1 cut(s) 916
EcoRII CCWGG 3 cut(s) 265, 433, 1046
EcoRV GATATC 1 cut(s) 400
EcoT14I CCWWGG 2 cut(s) 579, 927
EcoT22I ATGCAT 2 cut(s) 490, 684
ErhI CCWWGG 2 cut(s) 579, 927
FaeI CATG 7 cut(s) 11, 364, 483, 536, 625, 944, 1001
FaqI GGGAC 2 cut(s) 929, 986
FatI CATG 7 cut(s) 7, 360, 479, 532, 621, 940, 997
FauI CCCGC 1 cut(s) 1076
FbaI TGATCA 2 cut(s) 138, 778
FblI GTMKAC 1 cut(s) 1315
Fnu4HI GCNGC 3 cut(s) 327, 543, 1219
FokI GGATG 3 cut(s) 365, 405, 588
Fsp4HI GCNGC 3 cut(s) 327, 543, 1219
GluI GCNGC 3 cut(s) 327, 543, 1219
HaeIII GGCC 1 cut(s) 265
HapII CCGG 3 cut(s) 570, 605, 947
HgaI GACGC 1 cut(s) 500
Hin1II CATG 7 cut(s) 11, 364, 483, 536, 625, 944, 1001
HincII GTYRAC 1 cut(s) 1189
HindII GTYRAC 1 cut(s) 1189
HinfI GANTC 6 cut(s) 800, 806, 875, 1061, 1162, 1233
HpaI GTTAAC 1 cut(s) 1189
HpaII CCGG 3 cut(s) 570, 605, 947
HphI GGTGA 3 cut(s) 688, 734, 1216
Hpy166II GTNNAC 3 cut(s) 1189, 1268, 1316
Hpy188I TCNGA 5 cut(s) 276, 301, 805, 855, 1161
Hpy188III TCNNGA 3 cut(s) 209, 422, 899
Hpy8I GTNNAC 3 cut(s) 1189, 1268, 1316
Hpy99I CGWCG 1 cut(s) 516
HpyAV CCTTC 2 cut(s) 440, 713
HpyCH4III ACNGT 7 cut(s) 83, 176, 197, 989, 1178, 1184, 1313
HpyCH4IV ACGT 2 cut(s) 823, 1196
HpyCH4V TGCA 9 cut(s) 110, 158, 440, 488, 682, 866, 913, 1116, 1294
HpyF10VI GCNNNNNNNGC 2 cut(s) 548, 932
HpyF3I CTNAG 3 cut(s) 538, 971, 1065
HpySE526I ACGT 2 cut(s) 823, 1196
Hsp92II CATG 7 cut(s) 11, 364, 483, 536, 625, 944, 1001
Ksp22I TGATCA 2 cut(s) 138, 778
KspAI GTTAAC 1 cut(s) 1189
Kzo9I GATC 5 cut(s) 138, 292, 307, 618, 778
LmnI GCTCC 1 cut(s) 656
Lsp1109I GCAGC 2 cut(s) 313, 1230
LweI GCATC 3 cut(s) 669, 691, 880
MabI ACCWGGT 1 cut(s) 1046
MaeII ACGT 2 cut(s) 823, 1196
MaeIII GTNAC 4 cut(s) 57, 70, 1178, 1204
MalI GATC 5 cut(s) 140, 294, 309, 620, 780
MboI GATC 5 cut(s) 138, 292, 307, 618, 778
MboII GAAGA 8 cut(s) 26, 586, 625, 628, 719, 751, 809, 1125
MluCI AATT 9 cut(s) 27, 90, 96, 118, 784, 831, 916, 1090, 1129
MmeI TCCRAC 5 cut(s) 299, 322, 878, 1197, 1308
MnlI CCTC 8 cut(s) 94, 143, 861, 865, 976, 1014, 1152, 1262
Mph1103I ATGCAT 2 cut(s) 490, 684
MroXI GAANNNNTTC 2 cut(s) 429, 743
MseI TTAA 4 cut(s) 26, 1088, 1128, 1188
MspI CCGG 3 cut(s) 570, 605, 947
MspR9I CCNGG 6 cut(s) 267, 435, 571, 606, 947, 1048
MvaI CCWGG 3 cut(s) 267, 435, 1048
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 548, 932
NciI CCSGG 3 cut(s) 571, 606, 947
NdeII GATC 5 cut(s) 138, 292, 307, 618, 778
NlaIII CATG 7 cut(s) 11, 364, 483, 536, 625, 944, 1001
NlaIV GGNNCC 1 cut(s) 652
NmuCI GTSAC 2 cut(s) 1178, 1204
NruI TCGCGA 1 cut(s) 210
NsiI ATGCAT 2 cut(s) 490, 684
NspI RCATGY 3 cut(s) 364, 483, 944
PaeR7I CTCGAG 1 cut(s) 1253
PciI ACATGT 3 cut(s) 360, 479, 940
PcsI WCGNNNNNNNCGW 1 cut(s) 508
PdmI GAANNNNTTC 2 cut(s) 429, 743
PfeI GAWTC 6 cut(s) 800, 806, 875, 1061, 1162, 1233
Pfl23II CGTACG 1 cut(s) 1197
PfoI TCCNGGA 1 cut(s) 945
PkrI GCNGC 3 cut(s) 328, 544, 1220
Ppu21I YACGTR 1 cut(s) 1197
PscI ACATGT 3 cut(s) 360, 479, 940
PshBI ATTAAT 1 cut(s) 26
Psp1406I AACGTT 1 cut(s) 823
Psp6I CCWGG 3 cut(s) 265, 433, 1046
PspGI CCWGG 3 cut(s) 265, 433, 1046
PspLI CGTACG 1 cut(s) 1197
PspN4I GGNNCC 1 cut(s) 652
PspPI GGNCC 2 cut(s) 896, 1151
PspXI VCTCGAGB 1 cut(s) 1253
PstNI CAGNNNCTG 1 cut(s) 1182
RruI TCGCGA 1 cut(s) 210
RsaI GTAC 2 cut(s) 703, 1199
RsaNI GTAC 2 cut(s) 702, 1198
SaqAI TTAA 4 cut(s) 26, 1088, 1128, 1188
SatI GCNGC 3 cut(s) 327, 543, 1219
Sau3AI GATC 5 cut(s) 138, 292, 307, 618, 778
Sau96I GGNCC 2 cut(s) 896, 1151
ScrFI CCNGG 6 cut(s) 267, 435, 571, 606, 947, 1048
SexAI ACCWGGT 1 cut(s) 1046
SfaNI GCATC 3 cut(s) 669, 691, 880
Sfr274I CTCGAG 1 cut(s) 1253
SinI GGWCC 2 cut(s) 896, 1151
SlaI CTCGAG 1 cut(s) 1253
SmlI CTYRAG 3 cut(s) 1244, 1253, 1319
SmoI CTYRAG 3 cut(s) 1244, 1253, 1319
Sse9I AATT 9 cut(s) 27, 90, 96, 118, 784, 831, 916, 1090, 1129
SsiI CCGC 4 cut(s) 15, 505, 543, 1083
StyD4I CCNGG 6 cut(s) 265, 433, 569, 604, 945, 1046
StyI CCWWGG 2 cut(s) 579, 927
TaaI ACNGT 7 cut(s) 83, 176, 197, 989, 1178, 1184, 1313
TaiI ACGT 2 cut(s) 826, 1199
TaqI TCGA 4 cut(s) 737, 981, 1098, 1254
TasI AATT 9 cut(s) 27, 90, 96, 118, 784, 831, 916, 1090, 1129
TatI WGTACW 1 cut(s) 701
TauI GCSGC 1 cut(s) 545
TfiI GAWTC 6 cut(s) 800, 806, 875, 1061, 1162, 1233
Tru1I TTAA 4 cut(s) 26, 1088, 1128, 1188
Tru9I TTAA 4 cut(s) 26, 1088, 1128, 1188
TscAI CASTG 1 cut(s) 1183
TseFI GTSAC 2 cut(s) 1178, 1204
TseI GCWGC 2 cut(s) 326, 1218
Tsp45I GTSAC 2 cut(s) 1178, 1204
TspDTI ATGAA 5 cut(s) 12, 367, 461, 590, 1089
TspRI CASTG 1 cut(s) 1183
VpaK11BI GGWCC 2 cut(s) 896, 1151
VspI ATTAAT 1 cut(s) 26
XapI RAATTY 1 cut(s) 916
XceI RCATGY 3 cut(s) 364, 483, 944
XcmI CCANNNNNNNNNTGG 1 cut(s) 390
XhoI CTCGAG 1 cut(s) 1253
XmiI GTMKAC 1 cut(s) 1315
XmnI GAANNNNTTC 2 cut(s) 429, 743
Zsp2I ATGCAT 2 cut(s) 490, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.