FvH4_6g51660
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006146
Physical Location & Seq
Forward (+)
38264787 .. 38268181
3395 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51660.t1

Sequence Viewer

Length: 1272 bp
ATGTTACTGGAATCTGCTGTAATTGAATTTGAGGTTAATGCAGTAGATAATTCTTGTAGGGCTTGGTTGTTCAACAGCAGAGGATTTGCAAGCAAAGTCAAAAACTGTTCGTCTCAAGTCCAAGATTGTGGGGCGAATCGTGAATGCCCAAGGTGCCATTATCTTATCAGCAACAGCGATGTTTCAACAAAATGGCCTGGCTTTCCGACTGGTGTGAAATTTGATCCATCTGATTCTGAACTCATTGATCATTTAGCTGCGAAAGTTGGTGTTGGCAACTCAAAACCACACATGTTTATTGATGAGTTCATCCCGACTATTGATTGGGACGTAGGCATTTGCTACACTCATCCTGAAAAGCTTCCTGGTGCAAAGAAAGATGGAAGTAGCTTCCATTTCTTTCATAAAACATTAAATGCATATTCAACTGGTCAACGGAAGCGTCGCAAGATTGACAAAGAGCAAGGCTTGGATGCACAGGCTGTTCGTTGGCACAAGACTGGCAAGACCAAGGCTATAAAAGGTGGAGTGCATCCCGGCTGGAAGAAGATCATGGTGCTGTATAAAAGTTCAAACAAAGGATCCAAAGCAGATAAGGCTGATTGGGTGATGCATCAGTATCATTTGGGAAGTACAGAAGATGAGAAAGAAGGTGAATATGTGGTGTCAAAGATATTCTACCAACAGCCTAAGCAGACTGACAAGAATGAAGACAATTTGGTCAAAGGAGAACCTGAATCCTCCATACTTCAAATTTCTCCAATAACCCCCATAACATGTCCTCCAACTACTCCTGCACCACAGGAATCCGCTTGGCGTGATGATGATCCTGATGAATATATTCACAAATCCCCTGCCAAGGTGACAGAGTATGTCCCAGAAGTATCTCAGTATGCCGTACTCAGGAAGTTCGAGGGCAGCATGTCTCATGTTCCTCAACTTGATAGTCAATTTGAGGACAATATTGGGCAACCTACCTGGTTGGCAGGCGAATCTCAGGCTGATGAATACTATGGTTTAAACTGCGTGGACGACACCTTGTTATGCAAGGAGACATTTAACTCTTCCACTTCTCTAAATGGTCCAGTTCTGAATCCCATATCTATCACTGACTATGCTAACAATACGAACGGGGTGACTGGAAACGGAAGCACATCATTTGGAGTCCCTGACCTTGAGAACCTTGAGTTTGATAGTCCACCAGATTTTCAGCTACATGGTTTGCAATTCTGTTCCCAAGATAGTATACTTGATTGGTTGGACTGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

424

Amino Acids

47.29

Weight (kDa)

5.22

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 69 - 209 8.1e-25 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 719
AccB1I GGYRCC 1 cut(s) 153
AccI GTMKAC 1 cut(s) 1246
AciI CCGC 1 cut(s) 810
AclWI GGATC 4 cut(s) 218, 576, 589, 821
AcsI RAATTY 3 cut(s) 26, 218, 753
AfaI GTAC 2 cut(s) 634, 900
AfiI CCNNNNNNNGG 2 cut(s) 859, 903
AflIII ACRYGT 2 cut(s) 291, 776
AgsI TTSAA 6 cut(s) 26, 73, 186, 426, 573, 752
AjnI CCWGG 3 cut(s) 196, 364, 977
AluBI AGCT 4 cut(s) 257, 361, 390, 1213
AluI AGCT 4 cut(s) 257, 361, 390, 1213
Alw26I GTCTC 3 cut(s) 117, 930, 1046
AlwI GGATC 4 cut(s) 218, 576, 589, 821
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 2 cut(s) 257, 918
ApoI RAATTY 3 cut(s) 26, 218, 753
Asp700I GAANNNNTTC 2 cut(s) 360, 840
AspS9I GGNCC 1 cut(s) 1082
AsuC2I CCSGG 1 cut(s) 537
AsuHPI GGTGA 4 cut(s) 619, 665, 874, 1147
AvaII GGWCC 1 cut(s) 1082
BamHI GGATCC 1 cut(s) 581
BanI GGYRCC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 717
BbvI GCAGC 2 cut(s) 244, 930
BccI CCATC 2 cut(s) 235, 374
BceAI ACGGC 1 cut(s) 881
BciT130I CCWGG 3 cut(s) 198, 366, 979
BclI TGATCA 1 cut(s) 247
BcnI CCSGG 1 cut(s) 537
BcoDI GTCTC 3 cut(s) 117, 930, 1046
BisI GCNGC 2 cut(s) 258, 919
BlsI GCNGC 2 cut(s) 259, 920
Bme1390I CCNGG 4 cut(s) 198, 366, 537, 979
Bme18I GGWCC 1 cut(s) 1082
BmgT120I GGNCC 1 cut(s) 1082
BmiI GGNNCC 2 cut(s) 155, 583
BmrFI CCNGG 4 cut(s) 198, 366, 537, 979
BmsI GCATC 4 cut(s) 463, 541, 600, 622
BpiI GAAGAC 1 cut(s) 717
Bpu10I CCTNAGC 1 cut(s) 690
BpuEI CTTGAG 3 cut(s) 99, 1196, 1205
BpuMI CCSGG 1 cut(s) 537
BsaBI GATNNNNATC 1 cut(s) 825
BsaJI CCNNGG 3 cut(s) 149, 510, 858
BsaXI ACNNNNNCTCC 2 cut(s) 766, 796
Bsc4I CCNNNNNNNGG 2 cut(s) 859, 903
Bse1I ACTGG 7 cut(s) 12, 214, 433, 505, 1085, 1144, 1268
Bse8I GATNNNNATC 1 cut(s) 825
BseBI CCWGG 3 cut(s) 198, 366, 979
BseDI CCNNGG 3 cut(s) 149, 510, 858
BseGI GGATG 5 cut(s) 309, 349, 478, 532, 1272
BseJI GATNNNNATC 1 cut(s) 825
BseLI CCNNNNNNNGG 2 cut(s) 859, 903
BseMII CTCAG 3 cut(s) 902, 916, 1010
BseNI ACTGG 7 cut(s) 12, 214, 433, 505, 1085, 1144, 1268
BseXI GCAGC 2 cut(s) 244, 930
BsgI GTGCAG 1 cut(s) 780
BshFI GGCC 1 cut(s) 196
BshNI GGYRCC 1 cut(s) 153
BsiSI CCGG 1 cut(s) 537
BslFI GGGAC 3 cut(s) 341, 860, 1151
BslI CCNNNNNNNGG 2 cut(s) 859, 903
BsmAI GTCTC 3 cut(s) 117, 930, 1046
BsmBI CGTCTC 1 cut(s) 117
BsmFI GGGAC 3 cut(s) 341, 860, 1151
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 1 cut(s) 196
Bsp143I GATC 5 cut(s) 223, 247, 549, 581, 826
BspACI CCGC 1 cut(s) 810
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 3 cut(s) 901, 915, 1009
BspLI GGNNCC 2 cut(s) 155, 583
BspPI GGATC 4 cut(s) 218, 576, 589, 821
BspT107I GGYRCC 1 cut(s) 153
BsrI ACTGG 7 cut(s) 12, 214, 433, 505, 1085, 1144, 1268
BssECI CCNNGG 3 cut(s) 149, 510, 858
BssMI GATC 5 cut(s) 223, 247, 549, 581, 826
BssNAI GTATAC 1 cut(s) 1247
BssT1I CCWWGG 3 cut(s) 149, 510, 858
Bst1107I GTATAC 1 cut(s) 1247
Bst2UI CCWGG 3 cut(s) 198, 366, 979
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 1069
BstC8I GCNNGC 2 cut(s) 91, 988
BstDEI CTNAG 4 cut(s) 690, 888, 902, 996
BstF5I GGATG 5 cut(s) 309, 349, 478, 532, 1272
BstKTI GATC 5 cut(s) 226, 250, 552, 584, 829
BstMAI GTCTC 3 cut(s) 117, 930, 1046
BstMBI GATC 5 cut(s) 223, 247, 549, 581, 826
BstMWI GCNNNNNNNGC 2 cut(s) 153, 596
BstNI CCWGG 3 cut(s) 198, 366, 979
BstNSI RCATGY 3 cut(s) 295, 780, 925
BstSCI CCNGG 4 cut(s) 196, 364, 535, 977
BstV1I GCAGC 2 cut(s) 244, 930
BstV2I GAAGAC 1 cut(s) 717
BstX2I RGATCY 1 cut(s) 581
BstXI CCANNNNNNTGG 1 cut(s) 128
BstYI RGATCY 1 cut(s) 581
BstZ17I GTATAC 1 cut(s) 1247
BsuRI GGCC 1 cut(s) 196
BtgZI GCGATG 1 cut(s) 192
BtsCI GGATG 5 cut(s) 309, 349, 478, 532, 1272
BtsIMutI CAGTG 1 cut(s) 1107
Cac8I GCNNGC 2 cut(s) 91, 988
Cfr13I GGNCC 1 cut(s) 1082
CseI GACGC 1 cut(s) 431
CsiI ACCWGGT 1 cut(s) 977
Csp6I GTAC 2 cut(s) 633, 899
CviAII CATG 6 cut(s) 292, 553, 777, 922, 929, 1217
CviQI GTAC 2 cut(s) 633, 899
DdeI CTNAG 4 cut(s) 690, 888, 902, 996
DpnI GATC 5 cut(s) 225, 249, 551, 583, 828
DpnII GATC 5 cut(s) 223, 247, 549, 581, 826
DraI TTTAAA 1 cut(s) 1020
DrdI GACNNNNNNGTC 1 cut(s) 719
DseDI GACNNNNNNGTC 1 cut(s) 719
Eam1104I CTCTTC 1 cut(s) 1069
EarI CTCTTC 1 cut(s) 1069
Eco130I CCWWGG 3 cut(s) 149, 510, 858
Eco47I GGWCC 1 cut(s) 1082
EcoRII CCWGG 3 cut(s) 196, 364, 977
EcoT14I CCWWGG 3 cut(s) 149, 510, 858
EcoT22I ATGCAT 2 cut(s) 421, 615
ErhI CCWWGG 3 cut(s) 149, 510, 858
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 6 cut(s) 295, 556, 780, 925, 932, 1220
FaqI GGGAC 3 cut(s) 341, 860, 1151
FatI CATG 6 cut(s) 291, 552, 776, 921, 928, 1216
FbaI TGATCA 1 cut(s) 247
FblI GTMKAC 1 cut(s) 1246
Fnu4HI GCNGC 2 cut(s) 258, 919
FokI GGATG 4 cut(s) 296, 336, 485, 519
Fsp4HI GCNGC 2 cut(s) 258, 919
GluI GCNGC 2 cut(s) 258, 919
HaeIII GGCC 1 cut(s) 196
HapII CCGG 1 cut(s) 537
HgaI GACGC 1 cut(s) 431
Hin1II CATG 6 cut(s) 295, 556, 780, 925, 932, 1220
HincII GTYRAC 1 cut(s) 434
HindII GTYRAC 1 cut(s) 434
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 8 cut(s) 11, 136, 233, 737, 806, 992, 1093, 1164
HpaII CCGG 1 cut(s) 537
HphI GGTGA 4 cut(s) 619, 665, 874, 1147
Hpy166II GTNNAC 4 cut(s) 434, 1030, 1199, 1247
Hpy188I TCNGA 4 cut(s) 207, 232, 238, 1092
Hpy188III TCNNGA 5 cut(s) 140, 313, 353, 830, 904
Hpy8I GTNNAC 4 cut(s) 434, 1030, 1199, 1247
Hpy99I CGWCG 1 cut(s) 447
HpyAV CCTTC 1 cut(s) 644
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4IV ACGT 1 cut(s) 330
HpyF10VI GCNNNNNNNGC 2 cut(s) 153, 596
HpyF3I CTNAG 4 cut(s) 690, 888, 902, 996
HpySE526I ACGT 1 cut(s) 330
Hsp92II CATG 6 cut(s) 295, 556, 780, 925, 932, 1220
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 5 cut(s) 223, 247, 549, 581, 826
Lsp1109I GCAGC 2 cut(s) 244, 930
LweI GCATC 4 cut(s) 463, 541, 600, 622
MabI ACCWGGT 1 cut(s) 977
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 3 cut(s) 3, 862, 1135
MalI GATC 5 cut(s) 225, 249, 551, 583, 828
MboI GATC 5 cut(s) 223, 247, 549, 581, 826
MboII GAAGA 5 cut(s) 556, 559, 650, 722, 1056
MflI RGATCY 1 cut(s) 581
MluCI AATT 8 cut(s) 21, 26, 49, 218, 715, 753, 950, 1226
MlyI GAGTC 1 cut(s) 1173
MmeI TCCRAC 3 cut(s) 230, 809, 1239
MnlI CCTC 7 cut(s) 25, 74, 751, 792, 907, 945, 949
Mph1103I ATGCAT 2 cut(s) 421, 615
MroXI GAANNNNTTC 2 cut(s) 360, 840
MseI TTAA 4 cut(s) 36, 413, 1019, 1059
MspI CCGG 1 cut(s) 537
MspR9I CCNGG 4 cut(s) 198, 366, 537, 979
MssI GTTTAAAC 1 cut(s) 1020
Mva1269I GAATGC 1 cut(s) 149
MvaI CCWGG 3 cut(s) 198, 366, 979
MwoI GCNNNNNNNGC 2 cut(s) 153, 596
NciI CCSGG 1 cut(s) 537
NdeII GATC 5 cut(s) 223, 247, 549, 581, 826
NlaIII CATG 6 cut(s) 295, 556, 780, 925, 932, 1220
NlaIV GGNNCC 2 cut(s) 155, 583
NmuCI GTSAC 2 cut(s) 862, 1135
NsiI ATGCAT 2 cut(s) 421, 615
NspI RCATGY 3 cut(s) 295, 780, 925
PciI ACATGT 2 cut(s) 291, 776
PctI GAATGC 1 cut(s) 149
PdmI GAANNNNTTC 2 cut(s) 360, 840
PfeI GAWTC 7 cut(s) 11, 136, 233, 737, 806, 992, 1093
PkrI GCNGC 2 cut(s) 259, 920
PleI GAGTC 1 cut(s) 1172
PmeI GTTTAAAC 1 cut(s) 1020
PpsI GAGTC 1 cut(s) 1172
PscI ACATGT 2 cut(s) 291, 776
Psp6I CCWGG 3 cut(s) 196, 364, 977
PspGI CCWGG 3 cut(s) 196, 364, 977
PspN4I GGNNCC 2 cut(s) 155, 583
PspPI GGNCC 1 cut(s) 1082
PsuI RGATCY 1 cut(s) 581
RsaI GTAC 2 cut(s) 634, 900
RsaNI GTAC 2 cut(s) 633, 899
SaqAI TTAA 4 cut(s) 36, 413, 1019, 1059
SatI GCNGC 2 cut(s) 258, 919
Sau3AI GATC 5 cut(s) 223, 247, 549, 581, 826
Sau96I GGNCC 1 cut(s) 1082
SchI GAGTC 1 cut(s) 1173
ScrFI CCNGG 4 cut(s) 198, 366, 537, 979
SexAI ACCWGGT 1 cut(s) 977
SfaNI GCATC 4 cut(s) 463, 541, 600, 622
SinI GGWCC 1 cut(s) 1082
SmlI CTYRAG 3 cut(s) 114, 1175, 1184
SmoI CTYRAG 3 cut(s) 114, 1175, 1184
Sse9I AATT 8 cut(s) 21, 26, 49, 218, 715, 753, 950, 1226
SsiI CCGC 1 cut(s) 810
SspI AATATT 1 cut(s) 964
StyD4I CCNGG 4 cut(s) 196, 364, 535, 977
StyI CCWWGG 3 cut(s) 149, 510, 858
TaaI ACNGT 1 cut(s) 107
TaiI ACGT 1 cut(s) 333
TaqI TCGA 1 cut(s) 912
TasI AATT 8 cut(s) 21, 26, 49, 218, 715, 753, 950, 1226
TatI WGTACW 1 cut(s) 632
TfiI GAWTC 7 cut(s) 11, 136, 233, 737, 806, 992, 1093
Tru1I TTAA 4 cut(s) 36, 413, 1019, 1059
Tru9I TTAA 4 cut(s) 36, 413, 1019, 1059
TscAI CASTG 1 cut(s) 1114
TseFI GTSAC 2 cut(s) 862, 1135
TseI GCWGC 2 cut(s) 257, 918
Tsp45I GTSAC 2 cut(s) 862, 1135
TspDTI ATGAA 5 cut(s) 298, 392, 723, 849, 1020
TspGWI ACGGA 2 cut(s) 451, 1161
TspRI CASTG 1 cut(s) 1114
VpaK11BI GGWCC 1 cut(s) 1082
XapI RAATTY 3 cut(s) 26, 218, 753
XceI RCATGY 3 cut(s) 295, 780, 925
XmiI GTMKAC 1 cut(s) 1246
XmnI GAANNNNTTC 2 cut(s) 360, 840
Zsp2I ATGCAT 2 cut(s) 421, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.