Rorug02G0566400
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006146
Physical Location & Seq
Forward (+)
69124199 .. 69127539
3341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0566400.1

Sequence Viewer

Length: 1299 bp
ATGCTCTCTCTCCTTTCTTCTCTCTTCAGAGCATCAATGGCTGTGTTTGTGGTGGTACTACTCTGTGTGCTCTTTGTGCTCTGTTTCTGCTCTGCTTTGCTAAGATGGAATGAGGTGAGGTACAGGAAGAAGGGTCTTCCTCCAGGCACAATGGGCTGGCCAGTCTTTGGAGAAACCACAGAGTTCCTCAAGCAAGGCCCAAGCTTCATGAAAAACCAGAGAGCTAGGTATGGTAGTTTTTTCAAATCCCACATACTGGGGTGTCCTACCGTAGTTTCCATGGATCCAGAGGTGAACAGATACATCCTAATGAACGAAGCTAAAGGCCTCGTTCCCGGGTACCCTCAATCGATGTTGGATATCTTGGGCAAGTGTAACATTGCAGCTGTTCATGGCTCCACTCACAAGTACATGAGAGGGGCATTGCTTGGCCTCATTAGCTCAACCATGATCAGAGACCAGATTTTGCCCAAGATTGATGACTTCATGAGAGCCCACCTCAGTGGTTGGGGGAACCAAGTCATCAACATCCAAGAAAAGACCAAAGAGATGGCGCTTCTTTCGTCGCTTAAACAGATTGCAGGCATTGAATCAAGCTCGATTTCTCAGGCATTCAAGACCGACTTCTTCAAGCTTGTGTTGGGAACTCTCTCATTGCCCATTGATCTTCCTGGCACAAATTATCGCCGCGGATTTCAGGCGAGGAAAAATATTGTTAGCATGTTGAAGCAACTAATAGAAGATAGAAGGGCTTCTTCAGATGAAGTCCACCAAGACATGCTTGGTGGATTGATGAGAAGTGATGATCAGAACAGATACAAACTCACTGATGAAGAAATAATCGATCACATCATCACGATTATGTATTCGGGCTATGAGACTGTTTCGACCACATCAATGATGGCGGTTAAGTACCTTCATGATCATCCACAAGCGATTGAAGAACTCAGAAAAGAACATTTGGCAATCAGAGCCAGAAAAAGGCTCGAGGATCCCATTGACTGGAATGACCTGAAATCTATGCGGTTTACTCGTGCGGTGATATTTGAGACCTCAAGATTAGCTACTATTGTAAATGGGGTTTTGAGGAAAACCACTCAAGATATGGAACTAAATGGGTTTTTGATACCAAAAGGATGGAGAATCTATGTTTATACAAGAGAGACTAACTATGATTCGTTTACGTACCCTGATCCATTAACCTTCAATCCATGGAGATGGATAAGAGCTTGGAGTCTAACAACTCCTTTATATTTGGGGGAGGTACTAGGCTGTGTCCAGGAAAGGAGTTGGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

432

Amino Acids

49.53

Weight (kDa)

9.13

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 47 - 408 8e-43 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 339
AccB1I GGYRCC 1 cut(s) 339
AccB7I CCANNNNNTGG 3 cut(s) 167, 256, 1002
AccII CGCG 1 cut(s) 690
AciI CCGC 5 cut(s) 688, 690, 905, 1024, 1037
AclWI GGATC 5 cut(s) 278, 291, 986, 999, 1187
AcoI YGGCCR 1 cut(s) 158
AcuI CTGAAG 2 cut(s) 10, 741
AfaI GTAC 7 cut(s) 57, 122, 341, 410, 914, 1187, 1266
AfiI CCNNNNNNNGG 4 cut(s) 167, 256, 981, 1002
AgsI TTSAA 7 cut(s) 244, 590, 616, 631, 727, 941, 1207
AjnI CCWGG 3 cut(s) 142, 670, 1278
AleI CACNNNNGTG 1 cut(s) 501
AluBI AGCT 9 cut(s) 204, 224, 320, 386, 441, 597, 634, 1064, 1229
AluI AGCT 9 cut(s) 204, 224, 320, 386, 441, 597, 634, 1064, 1229
Alw21I GWGCWC 2 cut(s) 72, 81
Alw26I GTCTC 4 cut(s) 450, 872, 1043, 1157
AlwI GGATC 5 cut(s) 278, 291, 986, 999, 1187
Ama87I CYCGRG 2 cut(s) 335, 986
AoxI GGCC 4 cut(s) 158, 196, 325, 430
ApeKI GCWGC 1 cut(s) 383
Asp700I GAANNNNTTC 1 cut(s) 751
Asp718I GGTACC 1 cut(s) 339
AspLEI GCGC 1 cut(s) 556
AspS9I GGNCC 1 cut(s) 197
AsuC2I CCSGG 2 cut(s) 336, 337
AsuHPI GGTGA 3 cut(s) 127, 304, 1051
AvaI CYCGRG 2 cut(s) 335, 986
BalI TGGCCA 1 cut(s) 160
BamHI GGATCC 2 cut(s) 283, 991
BanI GGYRCC 1 cut(s) 339
BanII GRGCYC 1 cut(s) 496
BauI CACGAG 1 cut(s) 1032
BbsI GAAGAC 1 cut(s) 128
Bbv12I GWGCWC 2 cut(s) 72, 81
BbvI GCAGC 1 cut(s) 395
BccI CCATC 5 cut(s) 99, 544, 895, 1131, 1212
BciT130I CCWGG 3 cut(s) 144, 672, 1280
BclI TGATCA 3 cut(s) 450, 805, 922
BcnI CCSGG 2 cut(s) 336, 337
BcoDI GTCTC 4 cut(s) 450, 872, 1043, 1157
BfaI CTAG 2 cut(s) 225, 1268
BfoI RGCGCY 1 cut(s) 557
BisI GCNGC 2 cut(s) 384, 688
BlsI GCNGC 2 cut(s) 385, 689
Bme1390I CCNGG 5 cut(s) 144, 336, 337, 672, 1280
BmeT110I CYCGRG 2 cut(s) 335, 986
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 5 cut(s) 285, 341, 397, 515, 993
BmrFI CCNGG 5 cut(s) 144, 336, 337, 672, 1280
BmrI ACTGGG 1 cut(s) 266
BmsI GCATC 1 cut(s) 41
BmuI ACTGGG 1 cut(s) 266
BpiI GAAGAC 1 cut(s) 128
BplI GAGNNNNNCTC 2 cut(s) 483, 515
BpmI CTGGAG 1 cut(s) 126
BpuEI CTTGAG 3 cut(s) 173, 1039, 1083
BpuMI CCSGG 2 cut(s) 336, 337
Bsa29I ATCGAT 2 cut(s) 350, 843
BsaAI YACGTR 1 cut(s) 1185
BsaI GGTCTC 2 cut(s) 450, 1043
BsaJI CCNNGG 4 cut(s) 279, 335, 688, 1211
Bsc4I CCNNNNNNNGG 4 cut(s) 167, 256, 981, 1002
Bse1I ACTGG 3 cut(s) 161, 261, 1007
Bse3DI GCAATG 3 cut(s) 378, 422, 653
BseBI CCWGG 3 cut(s) 144, 672, 1280
BseCI ATCGAT 2 cut(s) 350, 843
BseDI CCNNGG 4 cut(s) 279, 335, 688, 1211
BseGI GGATG 4 cut(s) 303, 528, 925, 1142
BseLI CCNNNNNNNGG 4 cut(s) 167, 256, 981, 1002
BseMI GCAATG 3 cut(s) 378, 422, 653
BseMII CTCAG 3 cut(s) 514, 620, 961
BseNI ACTGG 3 cut(s) 161, 261, 1007
BseXI GCAGC 1 cut(s) 395
Bsh1236I CGCG 1 cut(s) 690
BshFI GGCC 4 cut(s) 160, 198, 327, 432
BshNI GGYRCC 1 cut(s) 339
BshVI ATCGAT 2 cut(s) 350, 843
BsiHKAI GWGCWC 2 cut(s) 72, 81
BsiHKCI CYCGRG 2 cut(s) 335, 986
BsiSI CCGG 1 cut(s) 336
BslI CCNNNNNNNGG 4 cut(s) 167, 256, 981, 1002
BsmAI GTCTC 4 cut(s) 450, 872, 1043, 1157
BsmI GAATGC 1 cut(s) 611
BsnI GGCC 4 cut(s) 160, 198, 327, 432
Bso31I GGTCTC 2 cut(s) 450, 1043
BsoBI CYCGRG 2 cut(s) 335, 986
Bsp1286I GDGCHC 3 cut(s) 72, 81, 496
Bsp143I GATC 8 cut(s) 283, 450, 664, 805, 844, 922, 991, 1192
Bsp19I CCATGG 2 cut(s) 279, 1211
BspACI CCGC 5 cut(s) 688, 690, 905, 1024, 1037
BspANI GGCC 4 cut(s) 160, 198, 327, 432
BspCNI CTCAG 3 cut(s) 513, 619, 960
BspDI ATCGAT 2 cut(s) 350, 843
BspFNI CGCG 1 cut(s) 690
BspHI TCATGA 3 cut(s) 207, 486, 919
BspLI GGNNCC 5 cut(s) 285, 341, 397, 515, 993
BspPI GGATC 5 cut(s) 278, 291, 986, 999, 1187
BspT107I GGYRCC 1 cut(s) 339
BspTNI GGTCTC 2 cut(s) 450, 1043
BsrDI GCAATG 3 cut(s) 378, 422, 653
BsrI ACTGG 3 cut(s) 161, 261, 1007
BssECI CCNNGG 4 cut(s) 279, 335, 688, 1211
BssMI GATC 8 cut(s) 283, 450, 664, 805, 844, 922, 991, 1192
BssSI CACGAG 1 cut(s) 1032
BssT1I CCWWGG 2 cut(s) 279, 1211
Bst2BI CACGAG 1 cut(s) 1032
Bst2UI CCWGG 3 cut(s) 144, 672, 1280
Bst4CI ACNGT 2 cut(s) 271, 883
Bst6I CTCTTC 1 cut(s) 29
BstBAI YACGTR 1 cut(s) 1185
BstC8I GCNNGC 2 cut(s) 158, 583
BstDEI CTNAG 4 cut(s) 101, 500, 606, 947
BstDSI CCRYGG 3 cut(s) 279, 688, 1211
BstF5I GGATG 4 cut(s) 303, 528, 925, 1142
BstFNI CGCG 1 cut(s) 690
BstH2I RGCGCY 1 cut(s) 557
BstHHI GCGC 1 cut(s) 556
BstKTI GATC 8 cut(s) 286, 453, 667, 808, 847, 925, 994, 1195
BstMAI GTCTC 4 cut(s) 450, 872, 1043, 1157
BstMBI GATC 8 cut(s) 283, 450, 664, 805, 844, 922, 991, 1192
BstMWI GCNNNNNNNGC 5 cut(s) 38, 76, 153, 438, 971
BstNI CCWGG 3 cut(s) 144, 672, 1280
BstNSI RCATGY 2 cut(s) 724, 781
BstSCI CCNGG 5 cut(s) 142, 334, 335, 670, 1278
BstSNI TACGTA 1 cut(s) 1185
BstUI CGCG 1 cut(s) 690
BstV1I GCAGC 1 cut(s) 395
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 2 cut(s) 283, 991
BstXI CCANNNNNNTGG 4 cut(s) 503, 550, 1137, 1218
BstYI RGATCY 2 cut(s) 283, 991
Bsu15I ATCGAT 2 cut(s) 350, 843
BsuRI GGCC 4 cut(s) 160, 198, 327, 432
BsuTUI ATCGAT 2 cut(s) 350, 843
BtgI CCRYGG 3 cut(s) 279, 688, 1211
BtsCI GGATG 4 cut(s) 303, 528, 925, 1142
BtsIMutI CAGTG 2 cut(s) 508, 825
Cac8I GCNNGC 2 cut(s) 158, 583
CciI TCATGA 3 cut(s) 207, 486, 919
CfoI GCGC 1 cut(s) 556
Cfr13I GGNCC 1 cut(s) 197
Cfr42I CCGCGG 1 cut(s) 691
Cfr9I CCCGGG 1 cut(s) 335
ClaI ATCGAT 2 cut(s) 350, 843
Csp6I GTAC 7 cut(s) 56, 121, 340, 409, 913, 1186, 1265
CviQI GTAC 7 cut(s) 56, 121, 340, 409, 913, 1186, 1265
DdeI CTNAG 4 cut(s) 101, 500, 606, 947
DpnI GATC 8 cut(s) 285, 452, 666, 807, 846, 924, 993, 1194
DpnII GATC 8 cut(s) 283, 450, 664, 805, 844, 922, 991, 1192
EaeI YGGCCR 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Eco105I TACGTA 1 cut(s) 1185
Eco130I CCWWGG 2 cut(s) 279, 1211
Eco147I AGGCCT 1 cut(s) 327
Eco24I GRGCYC 1 cut(s) 496
Eco31I GGTCTC 2 cut(s) 450, 1043
Eco32I GATATC 1 cut(s) 361
Eco57I CTGAAG 2 cut(s) 10, 741
Eco88I CYCGRG 2 cut(s) 335, 986
EcoRII CCWGG 3 cut(s) 142, 670, 1278
EcoRV GATATC 1 cut(s) 361
EcoT14I CCWWGG 2 cut(s) 279, 1211
EcoT38I GRGCYC 1 cut(s) 496
ErhI CCWWGG 2 cut(s) 279, 1211
FalI AAGNNNNNCTT 6 cut(s) 608, 640, 739, 771, 765, 797
FbaI TGATCA 3 cut(s) 450, 805, 922
Fnu4HI GCNGC 2 cut(s) 384, 688
FokI GGATG 4 cut(s) 290, 515, 912, 1149
FriOI GRGCYC 1 cut(s) 496
Fsp4HI GCNGC 2 cut(s) 384, 688
FspBI CTAG 2 cut(s) 225, 1268
GlaI GCGC 1 cut(s) 555
GluI GCNGC 2 cut(s) 384, 688
GsuI CTGGAG 1 cut(s) 126
HaeII RGCGCY 1 cut(s) 557
HaeIII GGCC 4 cut(s) 160, 198, 327, 432
HapII CCGG 1 cut(s) 336
HhaI GCGC 1 cut(s) 556
Hin6I GCGC 1 cut(s) 554
HinP1I GCGC 1 cut(s) 554
HindIII AAGCTT 2 cut(s) 202, 632
HinfI GANTC 4 cut(s) 590, 1143, 1175, 1234
HpaII CCGG 1 cut(s) 336
HphI GGTGA 3 cut(s) 127, 304, 1051
Hpy166II GTNNAC 4 cut(s) 295, 769, 1029, 1182
Hpy188I TCNGA 6 cut(s) 29, 455, 760, 810, 950, 971
Hpy188III TCNNGA 8 cut(s) 208, 287, 487, 616, 856, 920, 1056, 1100
Hpy8I GTNNAC 4 cut(s) 295, 769, 1029, 1182
Hpy99I CGWCG 1 cut(s) 568
HpyAV CCTTC 4 cut(s) 124, 741, 926, 1213
HpyCH4III ACNGT 2 cut(s) 271, 883
HpyCH4IV ACGT 1 cut(s) 1184
HpyCH4V TGCA 2 cut(s) 383, 581
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 76, 153, 438, 971
HpyF3I CTNAG 4 cut(s) 101, 500, 606, 947
HpySE526I ACGT 1 cut(s) 1184
HspAI GCGC 1 cut(s) 554
KpnI GGTACC 1 cut(s) 343
Ksp22I TGATCA 3 cut(s) 450, 805, 922
KspI CCGCGG 1 cut(s) 691
Kzo9I GATC 8 cut(s) 283, 450, 664, 805, 844, 922, 991, 1192
LmnI GCTCC 1 cut(s) 401
Lsp1109I GCAGC 1 cut(s) 395
LweI GCATC 1 cut(s) 41
MaeI CTAG 2 cut(s) 225, 1268
MaeII ACGT 1 cut(s) 1184
MaeIII GTNAC 1 cut(s) 374
MalI GATC 8 cut(s) 285, 452, 666, 807, 846, 924, 993, 1194
MboI GATC 8 cut(s) 283, 450, 664, 805, 844, 922, 991, 1192
MflI RGATCY 2 cut(s) 283, 991
MhlI GDGCHC 3 cut(s) 72, 81, 496
MlsI TGGCCA 1 cut(s) 160
MluCI AATT 1 cut(s) 679
MluNI TGGCCA 1 cut(s) 160
MlyI GAGTC 1 cut(s) 1243
MmeI TCCRAC 1 cut(s) 336
Mox20I TGGCCA 1 cut(s) 160
MroXI GAANNNNTTC 1 cut(s) 751
MscI TGGCCA 1 cut(s) 160
MseI TTAA 3 cut(s) 570, 909, 1199
MslI CAYNNNNRTG 5 cut(s) 308, 501, 860, 896, 1216
Msp20I TGGCCA 1 cut(s) 160
MspA1I CMGCKG 2 cut(s) 386, 690
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 5 cut(s) 144, 336, 337, 672, 1280
Mva1269I GAATGC 1 cut(s) 611
MvaI CCWGG 3 cut(s) 144, 672, 1280
MvnI CGCG 1 cut(s) 690
MwoI GCNNNNNNNGC 5 cut(s) 38, 76, 153, 438, 971
NciI CCSGG 2 cut(s) 336, 337
NcoI CCATGG 2 cut(s) 279, 1211
NdeII GATC 8 cut(s) 283, 450, 664, 805, 844, 922, 991, 1192
NlaIV GGNNCC 5 cut(s) 285, 341, 397, 515, 993
NspI RCATGY 2 cut(s) 724, 781
OliI CACNNNNGTG 1 cut(s) 501
PaeR7I CTCGAG 1 cut(s) 986
PagI TCATGA 3 cut(s) 207, 486, 919
PceI AGGCCT 1 cut(s) 327
PctI GAATGC 1 cut(s) 611
PdmI GAANNNNTTC 1 cut(s) 751
PfeI GAWTC 3 cut(s) 590, 1143, 1175
PflMI CCANNNNNTGG 3 cut(s) 167, 256, 1002
PfoI TCCNGGA 1 cut(s) 1278
PkrI GCNGC 2 cut(s) 385, 689
PleI GAGTC 1 cut(s) 1242
PpsI GAGTC 1 cut(s) 1242
Ppu21I YACGTR 1 cut(s) 1185
Psp6I CCWGG 3 cut(s) 142, 670, 1278
PspGI CCWGG 3 cut(s) 142, 670, 1278
PspN4I GGNNCC 5 cut(s) 285, 341, 397, 515, 993
PspPI GGNCC 1 cut(s) 197
PspXI VCTCGAGB 1 cut(s) 986
PsuI RGATCY 2 cut(s) 283, 991
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 7 cut(s) 57, 122, 341, 410, 914, 1187, 1266
RsaNI GTAC 7 cut(s) 56, 121, 340, 409, 913, 1186, 1265
RseI CAYNNNNRTG 5 cut(s) 308, 501, 860, 896, 1216
SacII CCGCGG 1 cut(s) 691
SaqAI TTAA 3 cut(s) 570, 909, 1199
SatI GCNGC 2 cut(s) 384, 688
Sau3AI GATC 8 cut(s) 283, 450, 664, 805, 844, 922, 991, 1192
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 1243
ScrFI CCNGG 5 cut(s) 144, 336, 337, 672, 1280
SduI GDGCHC 3 cut(s) 72, 81, 496
SfaNI GCATC 1 cut(s) 41
Sfr274I CTCGAG 1 cut(s) 986
Sfr303I CCGCGG 1 cut(s) 691
SgrBI CCGCGG 1 cut(s) 691
SlaI CTCGAG 1 cut(s) 986
SmaI CCCGGG 1 cut(s) 337
SmiMI CAYNNNNRTG 5 cut(s) 308, 501, 860, 896, 1216
SmlI CTYRAG 4 cut(s) 188, 986, 1054, 1098
SmoI CTYRAG 4 cut(s) 188, 986, 1054, 1098
SnaBI TACGTA 1 cut(s) 1185
Sse9I AATT 1 cut(s) 679
SseBI AGGCCT 1 cut(s) 327
SsiI CCGC 5 cut(s) 688, 690, 905, 1024, 1037
SspI AATATT 1 cut(s) 712
SspMI CTAG 2 cut(s) 225, 1268
StuI AGGCCT 1 cut(s) 327
StyD4I CCNGG 5 cut(s) 142, 334, 335, 670, 1278
StyI CCWWGG 2 cut(s) 279, 1211
TaaI ACNGT 2 cut(s) 271, 883
TaiI ACGT 1 cut(s) 1187
TaqI TCGA 5 cut(s) 350, 599, 843, 887, 987
TaqII GACCGA 1 cut(s) 635
TasI AATT 1 cut(s) 679
TatI WGTACW 1 cut(s) 408
TauI GCSGC 1 cut(s) 690
TfiI GAWTC 3 cut(s) 590, 1143, 1175
Tru1I TTAA 3 cut(s) 570, 909, 1199
Tru9I TTAA 3 cut(s) 570, 909, 1199
TscAI CASTG 2 cut(s) 508, 832
TseI GCWGC 1 cut(s) 383
TspDTI ATGAA 8 cut(s) 196, 224, 326, 380, 475, 777, 846, 908
TspMI CCCGGG 1 cut(s) 335
TspRI CASTG 2 cut(s) 508, 832
Van91I CCANNNNNTGG 3 cut(s) 167, 256, 1002
XceI RCATGY 2 cut(s) 724, 781
XcmI CCANNNNNNNNNTGG 3 cut(s) 779, 898, 1102
XhoI CTCGAG 1 cut(s) 986
XmaI CCCGGG 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 751
XspI CTAG 2 cut(s) 225, 1268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.