Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006146

Physical Location & Seq

Genomic Coordinates Forward (+)

26210598 .. 26214422

Gene Structure 3825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G293200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGAAATATGACATATGCAGACGCTTGGTTCAGTGGTTTTGTTCATTTTTCATGTCAATTTGGGTTTTTTTTTTCTTTTCTGAGAGACGCATATCAGCTTTCTCCTTTTTCACCTTTTTAAGTGTAATGGACGATGTAGAAAGTTTCGGGATGAATTTAAGGTTTTTTCCTACTCTGGAGTGGATGATGTACAAAGTTTCCAAGGCTTGGCTGATTAACAGTAGAGGACTGGCAAACAAAGTGAAAAATGCTGCTCTATCGTCTGCTTATCAAATCAAAGACTGTGGGGCAAATCGTGATTGCCCAAATTGCCATTTTGTTATAGATAACAGTGATGTTTTATCAGAATGGCCGGGCTTGCCAGCTGGTGTGAAGTTTGATCCATCTGATGCTGAACTCCTAGAACACTTGGCAGCTAAGTGTGGTGTTGGAAACTCAAAACCGCACATGTTTATCGATGAGTTCATCCCAACACTTGCTGGGGACAATGGAATTTACTACGATCATCCGGCAAACCTTCCTGGTTCAAAGAATGATGGAAGCAGCTTCCATTTCTTCCATAAAACAATTAATGCATATGCTACCGGTCACCGGAAGCGCCGCAAGGTTGACTGTCATCGTAGCTTGGCTGCAGAGCATGTCCGCTGGCACAAAACAGGTAAGACCAAGCCTATAATGGAAAATGGAGTTCAGAAGGGCTGTAAGAAGATCATGGTCCTATACAAAAGTTCAAAGAAAGGCTCCAAAGCAGATAAGTCTAACTGGGTGATGCATCAGTATCACCTGGGAACTGAAGATGGTGAGAAAGAAGGTGAATATGTGGTTTCAAAGATATTCTACCAACAGCATAAGCAGTCAGAAACGAATGATAACAATTTGGTCATTGAAGACGATGTCAATGCACTTGGAACTAGTCCAAGGACCCCCATAACAAGTGCTCCAAATCCACCTAGACCAGGGAAATCTGTTGGGTGTGATGATGTTCCTGATGAAGATGTGTTAGACTCATCTGCCAAGGAAGCAGAGCTTGTGCCTGGTACTCAGTTTGGGGACAATATAGGGGACACTACCTGGTTGGCAGGCGAATCTCAGGCTGATGAAAACTGTGATTTAGATTGCTTGGAGGACACCTTGTTATGCAAGGAGACTTTTGATTCTTCCACTCTTCTAAATGGTTCGTTTGCAGATGGCATATCTAGCACTGACTTTCCAAGCAATATATACGGGGTGACTGGAAATAGCAGCACATCATGTGGAATTGGTGACCTTGAGAACATTGATCTTGGCACTCCACCAGATTTCCAGCTTGCTGATTTGCAGTTTTGTTCCCAAGACAGTTTACTTGGATGGCTAGACAGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

455

Amino Acids

50.61

Weight (kDa)

5.21

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01600 AT5G14490 AT5G14490 AT5G14490 AT5G14490
fragaria_vesca	FvH4_6g51660 FvH4_6g51660
malus_domestica	MD09G1023600.v1.1 MD17G1023100.v1.1
prunus_persica	Prupe.3G293200_v2.0.a1 Prupe.3G293200_v2.0.a1 Prupe.3G293200_v2.0.a1
pyrus_communis	pycom111g01970 pycom17g01980
rosa_chinensis	RchiOBHm_Chr2g0173191
rosa_laevigata	RLG00000022169
rosa_roxburghii	Rroxscaffold_2G00079130
rosa_rugosa	Rorug02G0566100 Rorug02G0566200 Rorug02G0566300.1 Rorug02G0566400 Rorug02G0566400
rosa_samantha	Rh2AG646400 Rh2BG657100 Rh2CG622200 Rh2DG670500
rosa_wichuraiana	Rw2G053090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	207
AciI	CCGC	3 cut(s)	443, 601, 643
AclWI	GGATC	1 cut(s)	374
AcoI	YGGCCR	1 cut(s)	350
AcsI	RAATTY	2 cut(s)	154, 492
AcuI	CTGAAG	1 cut(s)	813
AfaI	GTAC	2 cut(s)	191, 1039
AfiI	CCNNNNNNNGG	3 cut(s)	207, 591, 956
AflIII	ACRYGT	1 cut(s)	447
AgeI	ACCGGT	1 cut(s)	584
AgsI	TTSAA	4 cut(s)	528, 732, 828, 887
AhlI	ACTAGT	1 cut(s)	911
AjnI	CCWGG	5 cut(s)	520, 783, 955, 1033, 1070
AluBI	AGCT	7 cut(s)	98, 365, 416, 546, 624, 1027, 1306
AluI	AGCT	7 cut(s)	98, 365, 416, 546, 624, 1027, 1306
Alw21I	GWGCWC	1 cut(s)	940
Alw26I	GTCTC	2 cut(s)	79, 1139
AlwI	GGATC	1 cut(s)	374
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	5 cut(s)	251, 413, 543, 629, 1242
ApoI	RAATTY	2 cut(s)	154, 492
AseI	ATTAAT	1 cut(s)	570
AsiGI	ACCGGT	1 cut(s)	584
AspLEI	GCGC	1 cut(s)	600
AspS9I	GGNCC	2 cut(s)	715, 921
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	8 cut(s)	103, 581, 773, 778, 812, 824, 1240, 1274
AvaII	GGWCC	2 cut(s)	715, 921
BbsI	GAAGAC	1 cut(s)	894
Bbv12I	GWGCWC	1 cut(s)	940
BbvI	GCAGC	5 cut(s)	238, 425, 555, 616, 1254
BccI	CCATC	5 cut(s)	391, 530, 791, 1181, 1341
BcgI	CGANNNNNNTGC	2 cut(s)	881, 915
BciT130I	CCWGG	5 cut(s)	522, 785, 957, 1035, 1072
BcnI	CCSGG	1 cut(s)	354
BcoDI	GTCTC	2 cut(s)	79, 1139
BcuI	ACTAGT	1 cut(s)	911
BfaI	CTAG	5 cut(s)	401, 912, 951, 1197, 1352
BfmI	CTRYAG	1 cut(s)	630
BfoI	RGCGCY	1 cut(s)	601
BisI	GCNGC	6 cut(s)	252, 414, 544, 601, 630, 1243
BlsI	GCNGC	6 cut(s)	253, 415, 545, 602, 631, 1244
Bme1390I	CCNGG	6 cut(s)	354, 522, 785, 957, 1035, 1072
Bme18I	GGWCC	2 cut(s)	715, 921
BmgT120I	GGNCC	2 cut(s)	715, 921
BmiI	GGNNCC	2 cut(s)	742, 923
BmrFI	CCNGG	6 cut(s)	354, 522, 785, 957, 1035, 1072
BmrI	ACTGGG	1 cut(s)	772
BmsI	GCATC	3 cut(s)	379, 759, 781
BmuI	ACTGGG	1 cut(s)	772
BpiI	GAAGAC	1 cut(s)	894
BpmI	CTGGAG	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	1289
BpuMI	CCSGG	1 cut(s)	354
Bsa29I	ATCGAT	1 cut(s)	456
BsaJI	CCNNGG	5 cut(s)	201, 784, 917, 956, 1014
BsaWI	WCCGGW	2 cut(s)	584, 591
BsaXI	ACNNNNNCTCC	2 cut(s)	922, 952
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 591, 956
Bse118I	RCCGGY	1 cut(s)	584
Bse1I	ACTGG	3 cut(s)	234, 767, 1237
BseBI	CCWGG	5 cut(s)	522, 785, 957, 1035, 1072
BseCI	ATCGAT	1 cut(s)	456
BseDI	CCNNGG	5 cut(s)	201, 784, 917, 956, 1014
BseGI	GGATG	5 cut(s)	156, 189, 465, 505, 1352
BseLI	CCNNNNNNNGG	3 cut(s)	207, 591, 956
BseMII	CTCAG	3 cut(s)	72, 1055, 1103
BseNI	ACTGG	3 cut(s)	234, 767, 1237
BseXI	GCAGC	5 cut(s)	238, 425, 555, 616, 1254
BseYI	CCCAGC	1 cut(s)	479
BshFI	GGCC	1 cut(s)	352
BshTI	ACCGGT	1 cut(s)	584
BshVI	ATCGAT	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	940
BsiSI	CCGG	4 cut(s)	353, 509, 585, 592
BslFI	GGGAC	3 cut(s)	497, 1064, 1076
BslI	CCNNNNNNNGG	3 cut(s)	207, 591, 956
BsmAI	GTCTC	2 cut(s)	79, 1139
BsmBI	CGTCTC	1 cut(s)	79
BsmFI	GGGAC	3 cut(s)	497, 1064, 1076
BsnI	GGCC	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	940
Bsp1407I	TGTACA	1 cut(s)	189
Bsp143I	GATC	4 cut(s)	379, 502, 708, 1279
BspACI	CCGC	3 cut(s)	443, 601, 643
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	3 cut(s)	73, 1054, 1102
BspDI	ATCGAT	1 cut(s)	456
BspLI	GGNNCC	2 cut(s)	742, 923
BspMAI	CTGCAG	1 cut(s)	634
BspPI	GGATC	1 cut(s)	374
BsrFI	RCCGGY	1 cut(s)	584
BsrGI	TGTACA	1 cut(s)	189
BsrI	ACTGG	3 cut(s)	234, 767, 1237
BssAI	RCCGGY	1 cut(s)	584
BssECI	CCNNGG	5 cut(s)	201, 784, 917, 956, 1014
BssMI	GATC	4 cut(s)	379, 502, 708, 1279
BssT1I	CCWWGG	3 cut(s)	201, 917, 1014
Bst2UI	CCWGG	5 cut(s)	522, 785, 957, 1035, 1072
Bst4CI	ACNGT	6 cut(s)	221, 284, 332, 614, 1106, 1337
Bst6I	CTCTTC	1 cut(s)	1170
BstAUI	TGTACA	1 cut(s)	189
BstC8I	GCNNGC	5 cut(s)	359, 363, 647, 1081, 1308
BstDEI	CTNAG	4 cut(s)	81, 417, 1041, 1089
BstEII	GGTNACC	2 cut(s)	587, 1262
BstENI	CCTNNNNNAGG	1 cut(s)	954
BstF5I	GGATG	5 cut(s)	156, 189, 465, 505, 1352
BstH2I	RGCGCY	1 cut(s)	601
BstHHI	GCGC	1 cut(s)	600
BstKTI	GATC	4 cut(s)	382, 505, 711, 1282
BstMAI	GTCTC	2 cut(s)	79, 1139
BstMBI	GATC	4 cut(s)	379, 502, 708, 1279
BstMWI	GCNNNNNNNGC	4 cut(s)	309, 358, 1019, 1197
BstNI	CCWGG	5 cut(s)	522, 785, 957, 1035, 1072
BstNSI	RCATGY	2 cut(s)	451, 641
BstPI	GGTNACC	2 cut(s)	587, 1262
BstSCI	CCNGG	6 cut(s)	352, 520, 783, 955, 1033, 1070
BstSFI	CTRYAG	1 cut(s)	630
BstV1I	GCAGC	5 cut(s)	238, 425, 555, 616, 1254
BstV2I	GAAGAC	1 cut(s)	894
Bsu15I	ATCGAT	1 cut(s)	456
BsuRI	GGCC	1 cut(s)	352
BsuTUI	ATCGAT	1 cut(s)	456
BtsCI	GGATG	5 cut(s)	156, 189, 465, 505, 1352
BtsIMutI	CAGTG	3 cut(s)	38, 337, 1200
Cac8I	GCNNGC	5 cut(s)	359, 363, 647, 1081, 1308
CfoI	GCGC	1 cut(s)	600
Cfr10I	RCCGGY	1 cut(s)	584
Cfr13I	GGNCC	2 cut(s)	715, 921
ClaI	ATCGAT	1 cut(s)	456
CseI	GACGC	2 cut(s)	30, 96
CsiI	ACCWGGT	1 cut(s)	1070
Csp6I	GTAC	2 cut(s)	190, 1038
CspAI	ACCGGT	1 cut(s)	584
CspCI	CAANNNNNGTGG	2 cut(s)	265, 300
CviAII	CATG	5 cut(s)	52, 448, 638, 712, 1251
CviQI	GTAC	2 cut(s)	190, 1038
DdeI	CTNAG	4 cut(s)	81, 417, 1041, 1089
DpnI	GATC	4 cut(s)	381, 504, 710, 1281
DpnII	GATC	4 cut(s)	379, 502, 708, 1279
EaeI	YGGCCR	1 cut(s)	350
Eam1104I	CTCTTC	1 cut(s)	1170
EarI	CTCTTC	1 cut(s)	1170
Eco130I	CCWWGG	3 cut(s)	201, 917, 1014
Eco47I	GGWCC	2 cut(s)	715, 921
Eco57I	CTGAAG	1 cut(s)	813
Eco91I	GGTNACC	2 cut(s)	587, 1262
EcoNI	CCTNNNNNAGG	1 cut(s)	954
EcoO109I	RGGNCCY	1 cut(s)	921
EcoO65I	GGTNACC	2 cut(s)	587, 1262
EcoRII	CCWGG	5 cut(s)	520, 783, 955, 1033, 1070
EcoT14I	CCWWGG	3 cut(s)	201, 917, 1014
EcoT22I	ATGCAT	2 cut(s)	577, 774
ErhI	CCWWGG	3 cut(s)	201, 917, 1014
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	5 cut(s)	55, 451, 641, 715, 1254
FalI	AAGNNNNNCTT	2 cut(s)	1011, 1043
FaqI	GGGAC	3 cut(s)	497, 1064, 1076
FatI	CATG	5 cut(s)	51, 447, 637, 711, 1250
FauNDI	CATATG	2 cut(s)	14, 577
Fnu4HI	GCNGC	6 cut(s)	252, 414, 544, 601, 630, 1243
FokI	GGATG	5 cut(s)	163, 196, 452, 492, 1359
Fsp4HI	GCNGC	6 cut(s)	252, 414, 544, 601, 630, 1243
FspBI	CTAG	5 cut(s)	401, 912, 951, 1197, 1352
GlaI	GCGC	1 cut(s)	599
GluI	GCNGC	6 cut(s)	252, 414, 544, 601, 630, 1243
GsaI	CCCAGC	1 cut(s)	483
GsuI	CTGGAG	1 cut(s)	197
HaeII	RGCGCY	1 cut(s)	601
HaeIII	GGCC	1 cut(s)	352
HapII	CCGG	4 cut(s)	353, 509, 585, 592
HgaI	GACGC	2 cut(s)	30, 96
HhaI	GCGC	1 cut(s)	600
Hin1II	CATG	5 cut(s)	55, 451, 641, 715, 1254
Hin6I	GCGC	1 cut(s)	598
HinP1I	GCGC	1 cut(s)	598
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	3 cut(s)	1004, 1085, 1154
HpaII	CCGG	4 cut(s)	353, 509, 585, 592
HphI	GGTGA	8 cut(s)	103, 581, 773, 778, 812, 824, 1240, 1274
Hpy166II	GTNNAC	2 cut(s)	610, 1340
Hpy188I	TCNGA	5 cut(s)	82, 346, 388, 693, 859
Hpy188III	TCNNGA	4 cut(s)	148, 176, 296, 986
Hpy8I	GTNNAC	2 cut(s)	610, 1340
HpyAV	CCTTC	3 cut(s)	527, 688, 803
HpyCH4III	ACNGT	6 cut(s)	221, 284, 332, 614, 1106, 1337
HpyCH4V	TGCA	8 cut(s)	18, 575, 632, 772, 902, 1140, 1184, 1318
HpyF10VI	GCNNNNNNNGC	4 cut(s)	309, 358, 1019, 1197
HpyF3I	CTNAG	4 cut(s)	81, 417, 1041, 1089
Hsp92II	CATG	5 cut(s)	55, 451, 641, 715, 1254
HspAI	GCGC	1 cut(s)	598
Kzo9I	GATC	4 cut(s)	379, 502, 708, 1279
LmnI	GCTCC	2 cut(s)	746, 943
Lsp1109I	GCAGC	5 cut(s)	238, 425, 555, 616, 1254
LweI	GCATC	3 cut(s)	379, 759, 781
MabI	ACCWGGT	1 cut(s)	1070
MaeI	CTAG	5 cut(s)	401, 912, 951, 1197, 1352
MaeIII	GTNAC	3 cut(s)	587, 1228, 1262
MalI	GATC	4 cut(s)	381, 504, 710, 1281
MboI	GATC	4 cut(s)	379, 502, 708, 1279
MboII	GAAGA	7 cut(s)	547, 718, 806, 899, 1004, 1149, 1157
MhlI	GDGCHC	1 cut(s)	940
MluCI	AATT	7 cut(s)	57, 154, 307, 492, 567, 874, 1257
MlyI	GAGTC	1 cut(s)	998
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	2 cut(s)	218, 1117
Mph1103I	ATGCAT	2 cut(s)	577, 774
MseI	TTAA	4 cut(s)	119, 158, 216, 570
MspA1I	CMGCKG	2 cut(s)	365, 645
MspI	CCGG	4 cut(s)	353, 509, 585, 592
MspR9I	CCNGG	6 cut(s)	354, 522, 785, 957, 1035, 1072
MvaI	CCWGG	5 cut(s)	522, 785, 957, 1035, 1072
MwoI	GCNNNNNNNGC	4 cut(s)	309, 358, 1019, 1197
NciI	CCSGG	1 cut(s)	354
NdeI	CATATG	2 cut(s)	14, 577
NdeII	GATC	4 cut(s)	379, 502, 708, 1279
NlaIII	CATG	5 cut(s)	55, 451, 641, 715, 1254
NlaIV	GGNNCC	2 cut(s)	742, 923
NmuCI	GTSAC	3 cut(s)	587, 1228, 1262
NsiI	ATGCAT	2 cut(s)	577, 774
NspI	RCATGY	2 cut(s)	451, 641
PciI	ACATGT	1 cut(s)	447
PfeI	GAWTC	2 cut(s)	1085, 1154
PflFI	GACNNNGTC	1 cut(s)	893
PflMI	CCANNNNNTGG	1 cut(s)	207
PinAI	ACCGGT	1 cut(s)	584
PkrI	GCNGC	6 cut(s)	253, 415, 545, 602, 631, 1244
PleI	GAGTC	1 cut(s)	998
PpsI	GAGTC	1 cut(s)	998
PpuMI	RGGWCCY	1 cut(s)	921
PscI	ACATGT	1 cut(s)	447
PshBI	ATTAAT	1 cut(s)	570
Psp5II	RGGWCCY	1 cut(s)	921
Psp6I	CCWGG	5 cut(s)	520, 783, 955, 1033, 1070
PspEI	GGTNACC	2 cut(s)	587, 1262
PspFI	CCCAGC	1 cut(s)	479
PspGI	CCWGG	5 cut(s)	520, 783, 955, 1033, 1070
PspN4I	GGNNCC	2 cut(s)	742, 923
PspPI	GGNCC	2 cut(s)	715, 921
PspPPI	RGGWCCY	1 cut(s)	921
PstI	CTGCAG	1 cut(s)	634
PsyI	GACNNNGTC	1 cut(s)	893
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	2 cut(s)	191, 1039
RsaNI	GTAC	2 cut(s)	190, 1038
SaqAI	TTAA	4 cut(s)	119, 158, 216, 570
SatI	GCNGC	6 cut(s)	252, 414, 544, 601, 630, 1243
Sau3AI	GATC	4 cut(s)	379, 502, 708, 1279
Sau96I	GGNCC	2 cut(s)	715, 921
SchI	GAGTC	1 cut(s)	998
ScrFI	CCNGG	6 cut(s)	354, 522, 785, 957, 1035, 1072
SduI	GDGCHC	1 cut(s)	940
SexAI	ACCWGGT	1 cut(s)	1070
SfaNI	GCATC	3 cut(s)	379, 759, 781
SfcI	CTRYAG	1 cut(s)	630
SinI	GGWCC	2 cut(s)	715, 921
SmlI	CTYRAG	1 cut(s)	1268
SmoI	CTYRAG	1 cut(s)	1268
SpeI	ACTAGT	1 cut(s)	911
Sse9I	AATT	7 cut(s)	57, 154, 307, 492, 567, 874, 1257
SsiI	CCGC	3 cut(s)	443, 601, 643
SspMI	CTAG	5 cut(s)	401, 912, 951, 1197, 1352
StyD4I	CCNGG	6 cut(s)	352, 520, 783, 955, 1033, 1070
StyI	CCWWGG	3 cut(s)	201, 917, 1014
TaaI	ACNGT	6 cut(s)	221, 284, 332, 614, 1106, 1337
TaqI	TCGA	1 cut(s)	456
TasI	AATT	7 cut(s)	57, 154, 307, 492, 567, 874, 1257
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	1 cut(s)	603
TfiI	GAWTC	2 cut(s)	1085, 1154
Tru1I	TTAA	4 cut(s)	119, 158, 216, 570
Tru9I	TTAA	4 cut(s)	119, 158, 216, 570
TscAI	CASTG	3 cut(s)	38, 337, 1207
TseFI	GTSAC	3 cut(s)	587, 1228, 1262
TseI	GCWGC	5 cut(s)	251, 413, 543, 629, 1242
Tsp45I	GTSAC	3 cut(s)	587, 1228, 1262
TspDTI	ATGAA	7 cut(s)	17, 33, 40, 167, 454, 1005, 1113
TspRI	CASTG	3 cut(s)	38, 337, 1207
Tth111I	GACNNNGTC	1 cut(s)	893
Van91I	CCANNNNNTGG	1 cut(s)	207
VpaK11BI	GGWCC	2 cut(s)	715, 921
VspI	ATTAAT	1 cut(s)	570
XagI	CCTNNNNNAGG	1 cut(s)	954
XapI	RAATTY	2 cut(s)	154, 492
XceI	RCATGY	2 cut(s)	451, 641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	673
XspI	CTAG	5 cut(s)	401, 912, 951, 1197, 1352
Zsp2I	ATGCAT	2 cut(s)	577, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.