AT5G14490
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006146
Physical Location & Seq
Reverse (-)
4670289 .. 4672958
2670 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14490.4

Sequence Viewer

Length: 1053 bp
ATGAAAACTCTACACAGGACTTGGATAGTGGATGGCCCATGGATCTCAAGGAATGTAAAGAATGCGTCTCTGTCTTCAGCTCTGCAGATTAAAGACTGCGGAGCTTATATCAACTGCTTTAACTGCTCTTACCGCATCGACAACAGCAATGTACTGACTCCATGGCCAGGCCTTCCTAAAGGTGTGAAATTCGAGCCAACCGATGAGGAAGTGATTGAGCATTTGGAAGCTAAGTGTGGTATTGATGGCTTAAAACCACATCTTCTTATCCAAGACTTTATATGTTCAGTCACTCAAGATGTTGGTATCAACTACACTCACCCTCAAAACCTTCCAGGTGTGAGTAAAGATGGAACTAGTGTCTTCTTCTTTAACAAGACGGCACATGCATATCAAAATGGGCAGAGAAAGCGGAGAAGGATCACACCAACTAGTCTCAAGGATGATACGGTTCGCTGGCACAAGACTGGTCAAACCAAACCGGTGATGCTCAATGGAATCCAGAAGGGATGCAAGAAGATCATGGTGCTCTACAAGAGCGCGAGAAAGGGATTCAAACCCGAGAAATCTAACTGGGTTTTGCACCAGTACCATTTGGGAACTGAAGAAGGCGAGATTGGGGAATATGTTGTCTCTAAGATCACATATCAGCAACCAAAGCAACAGGAGAAAACCATCGATGAGAGTGAGAGTTCTGGGGTTCGAGGTGGCCCTAGCACACCGAAAACTAGTACTATTACACAAGTTAGACCTGTGATTTCTGTTGATGAGGATGAAATAGCTTTTGATGATGATTCTAAGATGGTTCTTGATTCATATGCCGAGGGACTGGAGAACATTCAAGAAGCTTCTTCTGGTTCGACATCAGACAAAATAGCTAAAGTGGGAGGGAATGTGAGTGTTATTGAAGATAACTTAATGTCCAAGAAAATTGAAGCTTCGTCGATTCCTAATCATGGAAATGTTGACTACGGATCAGGAAACTTTTCAGTTTCAGATTTGGAGAATGCAGAATTAGGGACTCTCCCTGATTTACTTTCCGTGAGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

350

Amino Acids

38.74

Weight (kDa)

6.33

Isoelectric Point (pI)

32.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 56 - 196 1.6e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 542
AciI CCGC 3 cut(s) 99, 133, 412
AclWI GGATC 3 cut(s) 50, 428, 982
AcoI YGGCCR 1 cut(s) 164
AcsI RAATTY 1 cut(s) 188
AcuI CTGAAG 2 cut(s) 60, 624
AfaI GTAC 3 cut(s) 153, 590, 733
AfiI CCNNNNNNNGG 2 cut(s) 167, 956
AgeI ACCGGT 1 cut(s) 481
AgsI TTSAA 4 cut(s) 556, 842, 908, 935
AhlI ACTAGT 3 cut(s) 356, 431, 728
AjnI CCWGG 2 cut(s) 166, 334
AjuI GAANNNNNNNTTGG 2 cut(s) 600, 632
AluBI AGCT 7 cut(s) 80, 104, 230, 782, 848, 878, 938
AluI AGCT 7 cut(s) 80, 104, 230, 782, 848, 878, 938
Alw21I GWGCWC 1 cut(s) 531
Alw26I GTCTC 3 cut(s) 72, 440, 637
AlwI GGATC 3 cut(s) 50, 428, 982
Ama87I CYCGRG 1 cut(s) 560
AoxI GGCC 4 cut(s) 34, 164, 169, 709
ApoI RAATTY 1 cut(s) 188
AsiGI ACCGGT 1 cut(s) 481
Asp700I GAANNNNTTC 1 cut(s) 985
AspLEI GCGC 1 cut(s) 542
AspS9I GGNCC 2 cut(s) 35, 710
AsuHPI GGTGA 2 cut(s) 311, 496
AvaI CYCGRG 1 cut(s) 560
BalI TGGCCA 1 cut(s) 166
BbsI GAAGAC 2 cut(s) 66, 355
Bbv12I GWGCWC 1 cut(s) 531
BccI CCATC 5 cut(s) 26, 239, 344, 683, 796
BceAI ACGGC 1 cut(s) 396
BciT130I CCWGG 2 cut(s) 168, 336
BcoDI GTCTC 3 cut(s) 72, 440, 637
BcuI ACTAGT 3 cut(s) 356, 431, 728
BfaI CTAG 4 cut(s) 357, 432, 714, 729
BfmI CTRYAG 1 cut(s) 83
BmcAI AGTACT 1 cut(s) 733
Bme1390I CCNGG 2 cut(s) 168, 336
BmeT110I CYCGRG 1 cut(s) 560
BmgT120I GGNCC 2 cut(s) 35, 710
BmrFI CCNGG 2 cut(s) 168, 336
BmrI ACTGGG 1 cut(s) 583
BmsI GCATC 3 cut(s) 144, 477, 500
BmuI ACTGGG 1 cut(s) 583
BpiI GAAGAC 2 cut(s) 66, 355
BpmI CTGGAG 1 cut(s) 851
BpuEI CTTGAG 3 cut(s) 31, 279, 422
Bsa29I ATCGAT 1 cut(s) 678
BsaJI CCNNGG 3 cut(s) 38, 161, 822
BsaWI WCCGGW 1 cut(s) 481
BsaXI ACNNNNNCTCC 2 cut(s) 879, 909
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 956
Bse118I RCCGGY 1 cut(s) 481
Bse1I ACTGG 4 cut(s) 472, 578, 586, 834
Bse3DI GCAATG 1 cut(s) 154
BseBI CCWGG 2 cut(s) 168, 336
BseCI ATCGAT 1 cut(s) 678
BseDI CCNNGG 3 cut(s) 38, 161, 822
BseGI GGATG 4 cut(s) 37, 448, 515, 778
BseLI CCNNNNNNNGG 2 cut(s) 167, 956
BseMI GCAATG 1 cut(s) 154
BseNI ACTGG 4 cut(s) 472, 578, 586, 834
Bsh1236I CGCG 1 cut(s) 542
BshFI GGCC 4 cut(s) 36, 166, 171, 711
BshTI ACCGGT 1 cut(s) 481
BshVI ATCGAT 1 cut(s) 678
BsiHKAI GWGCWC 1 cut(s) 531
BsiHKCI CYCGRG 1 cut(s) 560
BsiSI CCGG 1 cut(s) 482
BslFI GGGAC 2 cut(s) 840, 1033
BslI CCNNNNNNNGG 2 cut(s) 167, 956
BsmAI GTCTC 3 cut(s) 72, 440, 637
BsmBI CGTCTC 1 cut(s) 72
BsmFI GGGAC 2 cut(s) 840, 1033
BsmI GAATGC 2 cut(s) 67, 1012
BsnI GGCC 4 cut(s) 36, 166, 171, 711
BsoBI CYCGRG 1 cut(s) 560
Bsp1286I GDGCHC 1 cut(s) 531
Bsp143I GATC 5 cut(s) 42, 420, 519, 639, 974
Bsp19I CCATGG 2 cut(s) 38, 161
BspACI CCGC 3 cut(s) 99, 133, 412
BspANI GGCC 4 cut(s) 36, 166, 171, 711
BspDI ATCGAT 1 cut(s) 678
BspFNI CGCG 1 cut(s) 542
BspMAI CTGCAG 1 cut(s) 87
BspPI GGATC 3 cut(s) 50, 428, 982
BsrDI GCAATG 1 cut(s) 154
BsrFI RCCGGY 1 cut(s) 481
BsrI ACTGG 4 cut(s) 472, 578, 586, 834
BssAI RCCGGY 1 cut(s) 481
BssECI CCNNGG 3 cut(s) 38, 161, 822
BssMI GATC 5 cut(s) 42, 420, 519, 639, 974
BssT1I CCWWGG 2 cut(s) 38, 161
Bst2UI CCWGG 2 cut(s) 168, 336
Bst4CI ACNGT 1 cut(s) 451
BstC8I GCNNGC 1 cut(s) 458
BstDEI CTNAG 3 cut(s) 231, 636, 798
BstDSI CCRYGG 2 cut(s) 38, 161
BstF5I GGATG 4 cut(s) 37, 448, 515, 778
BstFNI CGCG 1 cut(s) 542
BstHHI GCGC 1 cut(s) 542
BstKTI GATC 5 cut(s) 45, 423, 522, 642, 977
BstMAI GTCTC 3 cut(s) 72, 440, 637
BstMBI GATC 5 cut(s) 42, 420, 519, 639, 974
BstMWI GCNNNNNNNGC 4 cut(s) 123, 132, 409, 658
BstNI CCWGG 2 cut(s) 168, 336
BstNSI RCATGY 1 cut(s) 389
BstSCI CCNGG 2 cut(s) 166, 334
BstSFI CTRYAG 1 cut(s) 83
BstUI CGCG 1 cut(s) 542
BstV2I GAAGAC 2 cut(s) 66, 355
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
Bsu15I ATCGAT 1 cut(s) 678
BsuRI GGCC 4 cut(s) 36, 166, 171, 711
BsuTUI ATCGAT 1 cut(s) 678
BtgI CCRYGG 2 cut(s) 38, 161
BtsCI GGATG 4 cut(s) 37, 448, 515, 778
Cac8I GCNNGC 1 cut(s) 458
CfoI GCGC 1 cut(s) 542
Cfr10I RCCGGY 1 cut(s) 481
Cfr13I GGNCC 2 cut(s) 35, 710
ClaI ATCGAT 1 cut(s) 678
CseI GACGC 1 cut(s) 54
Csp6I GTAC 3 cut(s) 152, 589, 732
CspAI ACCGGT 1 cut(s) 481
CviAII CATG 5 cut(s) 39, 162, 386, 523, 956
CviQI GTAC 3 cut(s) 152, 589, 732
DdeI CTNAG 3 cut(s) 231, 636, 798
DpnI GATC 5 cut(s) 44, 422, 521, 641, 976
DpnII GATC 5 cut(s) 42, 420, 519, 639, 974
EaeI YGGCCR 1 cut(s) 164
Eco130I CCWWGG 2 cut(s) 38, 161
Eco147I AGGCCT 1 cut(s) 171
Eco57I CTGAAG 2 cut(s) 60, 624
Eco88I CYCGRG 1 cut(s) 560
EcoRII CCWGG 2 cut(s) 166, 334
EcoT14I CCWWGG 2 cut(s) 38, 161
EcoT22I ATGCAT 1 cut(s) 391
ErhI CCWWGG 2 cut(s) 38, 161
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 5 cut(s) 42, 165, 389, 526, 959
FaqI GGGAC 2 cut(s) 840, 1033
FatI CATG 5 cut(s) 38, 161, 385, 522, 955
FauNDI CATATG 1 cut(s) 817
FokI GGATG 4 cut(s) 44, 455, 522, 785
FspBI CTAG 4 cut(s) 357, 432, 714, 729
GlaI GCGC 1 cut(s) 541
GsuI CTGGAG 1 cut(s) 851
HaeIII GGCC 4 cut(s) 36, 166, 171, 711
HapII CCGG 1 cut(s) 482
HgaI GACGC 1 cut(s) 54
HhaI GCGC 1 cut(s) 542
Hin1II CATG 5 cut(s) 42, 165, 389, 526, 959
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HincII GTYRAC 1 cut(s) 967
HindII GTYRAC 1 cut(s) 967
HindIII AAGCTT 2 cut(s) 846, 936
HinfI GANTC 7 cut(s) 157, 498, 552, 794, 812, 946, 1021
HpaII CCGG 1 cut(s) 482
HphI GGTGA 2 cut(s) 311, 496
Hpy166II GTNNAC 1 cut(s) 967
Hpy188I TCNGA 2 cut(s) 868, 997
Hpy188III TCNNGA 5 cut(s) 296, 502, 809, 842, 978
Hpy8I GTNNAC 1 cut(s) 967
Hpy99I CGWCG 1 cut(s) 946
HpyAV CCTTC 5 cut(s) 182, 341, 411, 499, 602
HpyCH4III ACNGT 1 cut(s) 451
HpyCH4V TGCA 5 cut(s) 85, 389, 513, 583, 1010
HpyF10VI GCNNNNNNNGC 4 cut(s) 123, 132, 409, 658
HpyF3I CTNAG 3 cut(s) 231, 636, 798
Hsp92II CATG 5 cut(s) 42, 165, 389, 526, 959
HspAI GCGC 1 cut(s) 540
Kzo9I GATC 5 cut(s) 42, 420, 519, 639, 974
LmnI GCTCC 1 cut(s) 101
LweI GCATC 3 cut(s) 144, 477, 500
MaeI CTAG 4 cut(s) 357, 432, 714, 729
MaeIII GTNAC 1 cut(s) 289
MalI GATC 5 cut(s) 44, 422, 521, 641, 976
MboI GATC 5 cut(s) 42, 420, 519, 639, 974
MboII GAAGA 8 cut(s) 66, 254, 355, 358, 529, 617, 843, 920
MflI RGATCY 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 531
MlsI TGGCCA 1 cut(s) 166
MluCI AATT 3 cut(s) 188, 930, 1013
MluNI TGGCCA 1 cut(s) 166
MlyI GAGTC 2 cut(s) 151, 1015
MnlI CCTC 6 cut(s) 199, 333, 698, 763, 817, 881
Mox20I TGGCCA 1 cut(s) 166
Mph1103I ATGCAT 1 cut(s) 391
MroXI GAANNNNTTC 1 cut(s) 985
MscI TGGCCA 1 cut(s) 166
MseI TTAA 5 cut(s) 90, 120, 251, 372, 917
MslI CAYNNNNRTG 1 cut(s) 960
Msp20I TGGCCA 1 cut(s) 166
MspI CCGG 1 cut(s) 482
MspR9I CCNGG 2 cut(s) 168, 336
Mva1269I GAATGC 2 cut(s) 67, 1012
MvaI CCWGG 2 cut(s) 168, 336
MvnI CGCG 1 cut(s) 542
MwoI GCNNNNNNNGC 4 cut(s) 123, 132, 409, 658
NcoI CCATGG 2 cut(s) 38, 161
NdeI CATATG 1 cut(s) 817
NdeII GATC 5 cut(s) 42, 420, 519, 639, 974
NlaIII CATG 5 cut(s) 42, 165, 389, 526, 959
NmeAIII GCCGAG 1 cut(s) 847
NmuCI GTSAC 1 cut(s) 289
NsiI ATGCAT 1 cut(s) 391
NspI RCATGY 1 cut(s) 389
PceI AGGCCT 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 2 cut(s) 67, 1012
PdmI GAANNNNTTC 1 cut(s) 985
PfeI GAWTC 5 cut(s) 498, 552, 794, 812, 946
PinAI ACCGGT 1 cut(s) 481
PleI GAGTC 2 cut(s) 151, 1015
PpsI GAGTC 2 cut(s) 151, 1015
Psp6I CCWGG 2 cut(s) 166, 334
PspGI CCWGG 2 cut(s) 166, 334
PspPI GGNCC 2 cut(s) 35, 710
PstI CTGCAG 1 cut(s) 87
PsuI RGATCY 1 cut(s) 42
RsaI GTAC 3 cut(s) 153, 590, 733
RsaNI GTAC 3 cut(s) 152, 589, 732
RseI CAYNNNNRTG 1 cut(s) 960
SaqAI TTAA 5 cut(s) 90, 120, 251, 372, 917
Sau3AI GATC 5 cut(s) 42, 420, 519, 639, 974
Sau96I GGNCC 2 cut(s) 35, 710
ScaI AGTACT 1 cut(s) 733
SchI GAGTC 2 cut(s) 151, 1015
ScrFI CCNGG 2 cut(s) 168, 336
SduI GDGCHC 1 cut(s) 531
SfaNI GCATC 3 cut(s) 144, 477, 500
SfcI CTRYAG 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 960
SmlI CTYRAG 3 cut(s) 46, 294, 437
SmoI CTYRAG 3 cut(s) 46, 294, 437
SpeI ACTAGT 3 cut(s) 356, 431, 728
Sse9I AATT 3 cut(s) 188, 930, 1013
SseBI AGGCCT 1 cut(s) 171
SsiI CCGC 3 cut(s) 99, 133, 412
SspMI CTAG 4 cut(s) 357, 432, 714, 729
StuI AGGCCT 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 166, 334
StyI CCWWGG 2 cut(s) 38, 161
TaaI ACNGT 1 cut(s) 451
TaqI TCGA 6 cut(s) 138, 192, 678, 703, 860, 944
TasI AATT 3 cut(s) 188, 930, 1013
TatI WGTACW 2 cut(s) 151, 731
TfiI GAWTC 5 cut(s) 498, 552, 794, 812, 946
Tru1I TTAA 5 cut(s) 90, 120, 251, 372, 917
Tru9I TTAA 5 cut(s) 90, 120, 251, 372, 917
TseFI GTSAC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 3 cut(s) 17, 789, 804
TspGWI ACGGA 2 cut(s) 987, 1030
XapI RAATTY 1 cut(s) 188
XceI RCATGY 1 cut(s) 389
XmnI GAANNNNTTC 1 cut(s) 985
XspI CTAG 4 cut(s) 357, 432, 714, 729
ZrmI AGTACT 1 cut(s) 733
Zsp2I ATGCAT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.