pycom111g01970
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0006146
Physical Location & Seq
Reverse (-)
1177887 .. 1180726
2840 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g01970.1

Sequence Viewer

Length: 1206 bp
ATGGCAAGGGCTTGGCTGATTAACAGCAGAGGACTTGCAAAGAAAGTGAAGAATGCTTCTCAATCGTCTGCGTGTCCAATCAAAGACTCTGGGGCAAATCGTGAATGCCCGAATTGCCATTTTGTTATAGATAACAGTGATGTTTTATCGGAATGGCCTGGCTTACCAGTTGGTGTGAAGTTTGATCCATCTGATGGTGAACTCTTAGAACACTTAGCAGCTAAGTGTGGGGTCGGAAACTCACAGCCACACATGTTTATTGATGAGTTCATCCCAACACTTGAGGGGGACAATGGAATTTACTGTGATCATCCTGAAAACCTTCCTGGTGCAACAAAAGATGGAAGCAGCATCCATTTTTTCCACAAAACAATGAATGCATATGCTACTGGTCAGAGGAAGCGCCGCAAGGTTGATAATCAACGTAGTGTGGCTGCAGAGAATATCCGCTGGCACAAAACGGGTAAGACCAAGGCTTTAATAGAAAATGGAATTAAGGGCTGGAAGAAGATCATGGTTCTATACAAAAGTTCGAAGAAAGGTTCCAAACCAGAGAAGATGAACTGGGCGATGCATCAGTATCACCTGGGAGCTGAAGATGATGAGAAAGATGGTGAATATGTGGTGTCGAAGATATTCTACCAACAGCATAAGCAGTCAGAAACGAATGATAACAATGTGGTTGTTGAAGACTCTGACGTCAACGCACTTCAAACTAGTCCCAGGACCCCCGCAACCAATCCTCCAATTCCACCCAGACCAGGGAAATCTGTTTGGTGTGATGATGTTCCTGATGAAGCTATGCTCCCCTCATCTTCCAAGGAAGTGGAGCTAGTCCAGGAAGCATATCATGTCCCTCAACCTGATACTCGGTTTGAGGACAACATTGGGCAGCCTACCTGGCTGGCAGGCGAATCTCAGGTTGAAGATTTAGATAGCTTGGGCGAAACCTTGTTATGCAAGGAGATTTTCGGTTATTCCACTGATCTAAATGGTTCAGCACCGAATCCCATATCTAACACTGACTTTAATAACAATACATACGGGGTGACTGGAAACAGCAGCACATCGTGTGGAATTCATGACCTTGAAAACATTGAACTTGATTCTCCTCCAGATTTCCAGCTAGCTGTTATGATGACGATGAAAGAGCTTCCGGGAATGACATCGAATTCCCAATTTTGTGCAATCGTAGAATCCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

402

Amino Acids

44.3

Weight (kDa)

5.16

Isoelectric Point (pI)

48.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 56 - 196 3.6e-22 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 698
AatII GACGTC 1 cut(s) 702
AccB7I CCANNNNNTGG 1 cut(s) 194
AciI CCGC 3 cut(s) 406, 448, 732
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 3 cut(s) 297, 1077, 1171
AcuI CTGAAG 1 cut(s) 615
AcyI GRCGYC 1 cut(s) 699
AdeI CACNNNGTG 1 cut(s) 1071
AfiI CCNNNNNNNGG 3 cut(s) 194, 761, 762
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 5 cut(s) 689, 713, 926, 1091, 1100
AhlI ACTAGT 1 cut(s) 716
AjnI CCWGG 7 cut(s) 157, 325, 585, 722, 760, 837, 899
AluBI AGCT 8 cut(s) 221, 593, 800, 832, 939, 1126, 1130, 1153
AluI AGCT 8 cut(s) 221, 593, 800, 832, 939, 1126, 1130, 1153
AlwI GGATC 1 cut(s) 179
AoxI GGCC 1 cut(s) 155
ApeKI GCWGC 5 cut(s) 218, 348, 434, 892, 1062
ApoI RAATTY 3 cut(s) 297, 1077, 1171
Asp700I GAANNNNTTC 2 cut(s) 321, 635
AspLEI GCGC 1 cut(s) 405
AspS9I GGNCC 1 cut(s) 726
AsuC2I CCSGG 1 cut(s) 1158
AsuHPI GGTGA 4 cut(s) 209, 575, 626, 1060
AsuII TTCGAA 1 cut(s) 533
AsuNHI GCTAGC 1 cut(s) 1126
AvaII GGWCC 1 cut(s) 726
BarI GAAGNNNNNNTAC 2 cut(s) 623, 655
BbsI GAAGAC 1 cut(s) 696
BbvI GCAGC 5 cut(s) 230, 360, 421, 904, 1074
BccI CCATC 4 cut(s) 188, 196, 335, 605
BciT130I CCWGG 7 cut(s) 159, 327, 587, 724, 762, 839, 901
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 1 cut(s) 1158
BcuI ACTAGT 1 cut(s) 716
BfaI CTAG 3 cut(s) 717, 833, 1127
BfmI CTRYAG 1 cut(s) 435
BfoI RGCGCY 1 cut(s) 406
BglI GCCNNNNNGGC 1 cut(s) 901
BisI GCNGC 6 cut(s) 219, 349, 406, 435, 893, 1063
BlsI GCNGC 6 cut(s) 220, 350, 407, 436, 894, 1064
Bme1390I CCNGG 8 cut(s) 159, 327, 587, 724, 762, 839, 901, 1158
Bme18I GGWCC 1 cut(s) 726
BmgT120I GGNCC 1 cut(s) 726
BmiI GGNNCC 2 cut(s) 544, 728
BmrFI CCNGG 8 cut(s) 159, 327, 587, 724, 762, 839, 901, 1158
BmrI ACTGGG 1 cut(s) 574
BmsI GCATC 3 cut(s) 360, 561, 583
BmtI GCTAGC 1 cut(s) 1130
BmuI ACTGGG 1 cut(s) 574
BpiI GAAGAC 1 cut(s) 696
BpmI CTGGAG 1 cut(s) 1098
Bpu14I TTCGAA 1 cut(s) 533
BpuEI CTTGAG 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 1158
BsaHI GRCGYC 1 cut(s) 699
BsaJI CCNNGG 5 cut(s) 471, 586, 722, 761, 819
BsaXI ACNNNNNCTCC 2 cut(s) 727, 757
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 761, 762
Bse1I ACTGG 4 cut(s) 167, 394, 569, 1057
BseBI CCWGG 7 cut(s) 159, 327, 587, 724, 762, 839, 901
BseDI CCNNGG 5 cut(s) 471, 586, 722, 761, 819
BseGI GGATG 3 cut(s) 270, 310, 351
BseLI CCNNNNNNNGG 3 cut(s) 194, 761, 762
BseMII CTCAG 1 cut(s) 932
BseNI ACTGG 4 cut(s) 167, 394, 569, 1057
BseRI GAGGAG 1 cut(s) 1101
BseXI GCAGC 5 cut(s) 230, 360, 421, 904, 1074
BshFI GGCC 1 cut(s) 157
BsiSI CCGG 1 cut(s) 1157
BslFI GGGAC 3 cut(s) 302, 705, 839
BslI CCNNNNNNNGG 3 cut(s) 194, 761, 762
BsmFI GGGAC 3 cut(s) 302, 705, 839
BsmI GAATGC 3 cut(s) 58, 110, 382
BsnI GGCC 1 cut(s) 157
Bsp119I TTCGAA 1 cut(s) 533
Bsp143I GATC 4 cut(s) 184, 307, 510, 985
BspACI CCGC 3 cut(s) 406, 448, 732
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 1 cut(s) 931
BspHI TCATGA 1 cut(s) 1081
BspLI GGNNCC 2 cut(s) 544, 728
BspMAI CTGCAG 1 cut(s) 439
BspOI GCTAGC 1 cut(s) 1130
BspPI GGATC 1 cut(s) 179
BspT104I TTCGAA 1 cut(s) 533
BsrI ACTGG 4 cut(s) 167, 394, 569, 1057
BssECI CCNNGG 5 cut(s) 471, 586, 722, 761, 819
BssMI GATC 4 cut(s) 184, 307, 510, 985
BssNI GRCGYC 1 cut(s) 699
BssT1I CCWWGG 2 cut(s) 471, 819
Bst2UI CCWGG 7 cut(s) 159, 327, 587, 724, 762, 839, 901
Bst4CI ACNGT 2 cut(s) 137, 305
BstACI GRCGYC 1 cut(s) 699
BstBI TTCGAA 1 cut(s) 533
BstC8I GCNNGC 4 cut(s) 452, 906, 910, 1128
BstDEI CTNAG 4 cut(s) 205, 214, 222, 918
BstF5I GGATG 3 cut(s) 270, 310, 351
BstH2I RGCGCY 1 cut(s) 406
BstHHI GCGC 1 cut(s) 405
BstKTI GATC 4 cut(s) 187, 310, 513, 988
BstMBI GATC 4 cut(s) 184, 307, 510, 985
BstMWI GCNNNNNNNGC 2 cut(s) 114, 901
BstNI CCWGG 7 cut(s) 159, 327, 587, 724, 762, 839, 901
BstNSI RCATGY 1 cut(s) 256
BstSCI CCNGG 8 cut(s) 157, 325, 585, 722, 760, 837, 899, 1156
BstSFI CTRYAG 1 cut(s) 435
BstV1I GCAGC 5 cut(s) 230, 360, 421, 904, 1074
BstV2I GAAGAC 1 cut(s) 696
BstXI CCANNNNNNTGG 1 cut(s) 826
BsuRI GGCC 1 cut(s) 157
BtgZI GCGATG 1 cut(s) 584
BtsCI GGATG 3 cut(s) 270, 310, 351
BtsIMutI CAGTG 3 cut(s) 142, 981, 1020
Cac8I GCNNGC 4 cut(s) 452, 906, 910, 1128
CciI TCATGA 1 cut(s) 1081
CfoI GCGC 1 cut(s) 405
Cfr13I GGNCC 1 cut(s) 726
CviAII CATG 4 cut(s) 253, 514, 851, 1082
DdeI CTNAG 4 cut(s) 205, 214, 222, 918
DpnI GATC 4 cut(s) 186, 309, 512, 987
DpnII GATC 4 cut(s) 184, 307, 510, 985
DraIII CACNNNGTG 1 cut(s) 1071
DrdI GACNNNNNNGTC 1 cut(s) 698
DseDI GACNNNNNNGTC 1 cut(s) 698
Eco130I CCWWGG 2 cut(s) 471, 819
Eco47I GGWCC 1 cut(s) 726
Eco57I CTGAAG 1 cut(s) 615
EcoO109I RGGNCCY 1 cut(s) 726
EcoRI GAATTC 2 cut(s) 1077, 1171
EcoRII CCWGG 7 cut(s) 157, 325, 585, 722, 760, 837, 899
EcoT14I CCWWGG 2 cut(s) 471, 819
EcoT22I ATGCAT 2 cut(s) 382, 576
ErhI CCWWGG 2 cut(s) 471, 819
FaeI CATG 4 cut(s) 256, 517, 854, 1085
FaqI GGGAC 3 cut(s) 302, 705, 839
FatI CATG 4 cut(s) 252, 513, 850, 1081
FauI CCCGC 1 cut(s) 739
FauNDI CATATG 1 cut(s) 382
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 6 cut(s) 219, 349, 406, 435, 893, 1063
FokI GGATG 3 cut(s) 257, 297, 338
Fsp4HI GCNGC 6 cut(s) 219, 349, 406, 435, 893, 1063
FspBI CTAG 3 cut(s) 717, 833, 1127
GlaI GCGC 1 cut(s) 404
GluI GCNGC 6 cut(s) 219, 349, 406, 435, 893, 1063
GsuI CTGGAG 1 cut(s) 1098
HaeII RGCGCY 1 cut(s) 406
HaeIII GGCC 1 cut(s) 157
HapII CCGG 1 cut(s) 1157
HhaI GCGC 1 cut(s) 405
Hin1I GRCGYC 1 cut(s) 699
Hin1II CATG 4 cut(s) 256, 517, 854, 1085
Hin6I GCGC 1 cut(s) 403
HinP1I GCGC 1 cut(s) 403
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HinfI GANTC 6 cut(s) 86, 692, 914, 1006, 1106, 1196
HpaII CCGG 1 cut(s) 1157
HphI GGTGA 4 cut(s) 209, 575, 626, 1060
Hpy166II GTNNAC 2 cut(s) 200, 703
Hpy188I TCNGA 6 cut(s) 151, 193, 236, 396, 661, 697
Hpy188III TCNNGA 5 cut(s) 101, 314, 791, 1082, 1115
Hpy8I GTNNAC 2 cut(s) 200, 703
HpyAV CCTTC 1 cut(s) 332
HpyCH4III ACNGT 2 cut(s) 137, 305
HpyCH4IV ACGT 2 cut(s) 424, 699
HpyCH4V TGCA 7 cut(s) 38, 332, 380, 437, 574, 960, 1187
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 901
HpyF3I CTNAG 4 cut(s) 205, 214, 222, 918
HpySE526I ACGT 2 cut(s) 424, 699
Hsp92I GRCGYC 1 cut(s) 699
Hsp92II CATG 4 cut(s) 256, 517, 854, 1085
HspAI GCGC 1 cut(s) 403
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 4 cut(s) 184, 307, 510, 985
LmnI GCTCC 3 cut(s) 590, 810, 829
Lsp1109I GCAGC 5 cut(s) 230, 360, 421, 904, 1074
LweI GCATC 3 cut(s) 360, 561, 583
MaeI CTAG 3 cut(s) 717, 833, 1127
MaeII ACGT 2 cut(s) 424, 699
MaeIII GTNAC 1 cut(s) 1048
MalI GATC 4 cut(s) 186, 309, 512, 987
MboI GATC 4 cut(s) 184, 307, 510, 985
MluCI AATT 7 cut(s) 112, 297, 492, 747, 1077, 1171, 1178
MlyI GAGTC 2 cut(s) 80, 686
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 8 cut(s) 23, 277, 390, 753, 820, 867, 871, 1122
Mph1103I ATGCAT 2 cut(s) 382, 576
MroXI GAANNNNTTC 2 cut(s) 321, 635
MseI TTAA 5 cut(s) 21, 479, 495, 1029, 1204
MspA1I CMGCKG 1 cut(s) 450
MspI CCGG 1 cut(s) 1157
MspR9I CCNGG 8 cut(s) 159, 327, 587, 724, 762, 839, 901, 1158
Mva1269I GAATGC 3 cut(s) 58, 110, 382
MvaI CCWGG 7 cut(s) 159, 327, 587, 724, 762, 839, 901
MwoI GCNNNNNNNGC 2 cut(s) 114, 901
NciI CCSGG 1 cut(s) 1158
NdeI CATATG 1 cut(s) 382
NdeII GATC 4 cut(s) 184, 307, 510, 985
NheI GCTAGC 1 cut(s) 1126
NlaIII CATG 4 cut(s) 256, 517, 854, 1085
NlaIV GGNNCC 2 cut(s) 544, 728
NmuCI GTSAC 1 cut(s) 1048
NsiI ATGCAT 2 cut(s) 382, 576
NspI RCATGY 1 cut(s) 256
NspV TTCGAA 1 cut(s) 533
PagI TCATGA 1 cut(s) 1081
PciI ACATGT 1 cut(s) 252
PctI GAATGC 3 cut(s) 58, 110, 382
PdmI GAANNNNTTC 2 cut(s) 321, 635
PfeI GAWTC 4 cut(s) 914, 1006, 1106, 1196
PflMI CCANNNNNTGG 1 cut(s) 194
PfoI TCCNGGA 2 cut(s) 837, 1156
PkrI GCNGC 6 cut(s) 220, 350, 407, 436, 894, 1064
PleI GAGTC 2 cut(s) 80, 686
PpsI GAGTC 2 cut(s) 80, 686
PpuMI RGGWCCY 1 cut(s) 726
PscI ACATGT 1 cut(s) 252
Psp5II RGGWCCY 1 cut(s) 726
Psp6I CCWGG 7 cut(s) 157, 325, 585, 722, 760, 837, 899
PspGI CCWGG 7 cut(s) 157, 325, 585, 722, 760, 837, 899
PspN4I GGNNCC 2 cut(s) 544, 728
PspPI GGNCC 1 cut(s) 726
PspPPI RGGWCCY 1 cut(s) 726
PstI CTGCAG 1 cut(s) 439
SaqAI TTAA 5 cut(s) 21, 479, 495, 1029, 1204
SatI GCNGC 6 cut(s) 219, 349, 406, 435, 893, 1063
Sau3AI GATC 4 cut(s) 184, 307, 510, 985
Sau96I GGNCC 1 cut(s) 726
SchI GAGTC 2 cut(s) 80, 686
ScrFI CCNGG 8 cut(s) 159, 327, 587, 724, 762, 839, 901, 1158
SfaNI GCATC 3 cut(s) 360, 561, 583
SfcI CTRYAG 1 cut(s) 435
SfuI TTCGAA 1 cut(s) 533
SinI GGWCC 1 cut(s) 726
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
SpeI ACTAGT 1 cut(s) 716
Sse9I AATT 7 cut(s) 112, 297, 492, 747, 1077, 1171, 1178
SsiI CCGC 3 cut(s) 406, 448, 732
SspMI CTAG 3 cut(s) 717, 833, 1127
StyD4I CCNGG 8 cut(s) 157, 325, 585, 722, 760, 837, 899, 1156
StyI CCWWGG 2 cut(s) 471, 819
TaaI ACNGT 2 cut(s) 137, 305
TaiI ACGT 2 cut(s) 427, 702
TaqI TCGA 3 cut(s) 533, 629, 1169
TasI AATT 7 cut(s) 112, 297, 492, 747, 1077, 1171, 1178
TauI GCSGC 1 cut(s) 408
TfiI GAWTC 4 cut(s) 914, 1006, 1106, 1196
Tru1I TTAA 5 cut(s) 21, 479, 495, 1029, 1204
Tru9I TTAA 5 cut(s) 21, 479, 495, 1029, 1204
TscAI CASTG 3 cut(s) 142, 988, 1027
TseFI GTSAC 1 cut(s) 1048
TseI GCWGC 5 cut(s) 218, 348, 434, 892, 1062
Tsp45I GTSAC 1 cut(s) 1048
TspDTI ATGAA 6 cut(s) 259, 389, 575, 810, 1070, 1160
TspRI CASTG 3 cut(s) 142, 988, 1027
Van91I CCANNNNNTGG 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 726
XapI RAATTY 3 cut(s) 297, 1077, 1171
XceI RCATGY 1 cut(s) 256
XmnI GAANNNNTTC 2 cut(s) 321, 635
XspI CTAG 3 cut(s) 717, 833, 1127
ZraI GACGTC 1 cut(s) 700
Zsp2I ATGCAT 2 cut(s) 382, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.