RLG00000022169
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006146
Physical Location & Seq
Forward (+)
81482005 .. 81485147
3143 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022169

Sequence Viewer

Length: 1236 bp
ATGGCGAGGGCTTGGCTGATCAACAGCAGAGGATTTGCAAACAAAGTCAAAAACTGTGCTTCTCAAATCAAAGACTGTGGGGCGAGTCGCGAGTGTCCAAAATGCCATTATCTTATCAGCAACAGCGATGTTTCAACAGAATGGCCTGGCTTTCCGACTGGTGTGAAGTTTGATCCATCTGATACTGATCTCATAGAACATTTAGCTGCGAAAGTTGGTGTTGGAAACTCAAAACCACACATGTTTATTGATGAGTTCATCCCAACTATTGATTGGGATATCGGCATTTGCTACACTCATCCTGAAAACCTTCCTGGTGCAAAGAAAGATGGAAGTAGCTTCCATTTCTTTCATAAAACATGTAATGCATATTCTACTGGTCAGCGGAAGCGTCGCAAGATTGACAAAGAGCATGACTTGACCGCACAGGCTGTTCGTTGGCACAAGACCGGCAAGACCAAGGCTATTAGAAGTGGAGTTCATCCGGGCTGGAAGAAGATCATGGTGTTGTATAAAAGTTCAATCAAAGGGTCCAAAGCAGATAAGACTGACTGGGTGATGCATCAGTATCATTTGGGAAGTACAGAAGATGAGAAAGAAGGCGAATATGTGGTGTCAAAGATATTCTATCAACAGCCTAAGCAGGCTGACAAGAATGATCACAATTTGGTCATTGAACAATCTGAATCCCATGTGCTTCAACGTTCTCCAATTACCCCCATAACAAATCCTCCAACTACTCCTGCACCAGAGGAATCTGCTTGGTGTGATGCTGGTTCTGACGAATATATGCAGAATTCCTATGCCAAGGTAGCAGAACATGTCCCGGAAGTATCTCAATATGCCCAACTTAGGAAGTTCGAGGACAGTATGTCTCATGTCCCTCAACTTGATAGTCAGTTTGAGAGCAATATGGGGCAACCTACCTGGTTGGCAGGCGAATCTCAGGCTGATGAATACTATGGTTTAAATTGCTTGGATGACACCTTGTTATGCAAGGAGACATTTAATTCTTCCACTCCTATAAATGGTCCAGTTCTGAATCCCATATCTAACAGTGACTGTGTTAACAACACGTATGGGGTGACTGGAAATAGCAGCACAGCATTTGGAATCCCTGACCTTGAGAACCTTGAGTTTGATAGTCCACCACATTTCCAGCTAACTGGTTTGCAGTTTTGTTCCCAAGACACTTCTAGGGCAGGTGACCATGGAGCTACAAGTAAGCAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

412

Amino Acids

45.83

Weight (kDa)

5.85

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 52 - 192 1.2e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1193
Acc36I ACCTGC 1 cut(s) 1193
AccII CGCG 1 cut(s) 90
AciI CCGC 2 cut(s) 385, 423
AclI AACGTT 1 cut(s) 703
AclWI GGATC 1 cut(s) 167
AcsI RAATTY 1 cut(s) 796
AfaI GTAC 1 cut(s) 583
AfiI CCNNNNNNNGG 2 cut(s) 852, 1028
AflIII ACRYGT 4 cut(s) 240, 359, 820, 1074
AgsI TTSAA 4 cut(s) 135, 522, 677, 701
AhdI GACNNNNNGTC 1 cut(s) 871
AjnI CCWGG 3 cut(s) 145, 313, 926
AluBI AGCT 4 cut(s) 206, 339, 1162, 1217
AluI AGCT 4 cut(s) 206, 339, 1162, 1217
Alw26I GTCTC 2 cut(s) 879, 995
AlwI GGATC 1 cut(s) 167
AlwNI CAGNNNCTG 1 cut(s) 1062
AoxI GGCC 1 cut(s) 143
ApeKI GCWGC 2 cut(s) 206, 1098
ApoI RAATTY 1 cut(s) 796
Asp700I GAANNNNTTC 1 cut(s) 309
AspS9I GGNCC 2 cut(s) 531, 1031
AsuC2I CCSGG 2 cut(s) 486, 827
AsuHPI GGTGA 3 cut(s) 568, 1096, 1217
AvaII GGWCC 2 cut(s) 531, 1031
BbvI GCAGC 2 cut(s) 193, 1110
BccI CCATC 2 cut(s) 184, 323
BciT130I CCWGG 3 cut(s) 147, 315, 928
BclI TGATCA 2 cut(s) 18, 658
BcnI CCSGG 2 cut(s) 486, 827
BcoDI GTCTC 2 cut(s) 879, 995
BfaI CTAG 1 cut(s) 1197
BfuAI ACCTGC 1 cut(s) 1193
BisI GCNGC 2 cut(s) 207, 1099
BlsI GCNGC 2 cut(s) 208, 1100
Bme1390I CCNGG 5 cut(s) 147, 315, 486, 827, 928
Bme18I GGWCC 2 cut(s) 531, 1031
BmeRI GACNNNNNGTC 1 cut(s) 871
BmgT120I GGNCC 2 cut(s) 531, 1031
BmiI GGNNCC 1 cut(s) 532
BmrFI CCNGG 5 cut(s) 147, 315, 486, 827, 928
BmrI ACTGGG 1 cut(s) 562
BmsI GCATC 3 cut(s) 549, 571, 760
BmuI ACTGGG 1 cut(s) 562
Bpu10I CCTNAGC 1 cut(s) 639
BpuEI CTTGAG 2 cut(s) 1145, 1154
BpuMI CCSGG 2 cut(s) 486, 827
BsaAI YACGTR 1 cut(s) 1077
BsaBI GATNNNNATC 1 cut(s) 186
BsaJI CCNNGG 3 cut(s) 459, 807, 1210
BsaXI ACNNNNNCTCC 2 cut(s) 715, 745
Bsc4I CCNNNNNNNGG 2 cut(s) 852, 1028
Bse118I RCCGGY 1 cut(s) 449
Bse1I ACTGG 6 cut(s) 163, 382, 557, 1034, 1093, 1171
Bse8I GATNNNNATC 1 cut(s) 186
BseBI CCWGG 3 cut(s) 147, 315, 928
BseDI CCNNGG 3 cut(s) 459, 807, 1210
BseGI GGATG 4 cut(s) 258, 298, 481, 985
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 2 cut(s) 852, 1028
BseMII CTCAG 1 cut(s) 959
BseNI ACTGG 6 cut(s) 163, 382, 557, 1034, 1093, 1171
BseXI GCAGC 2 cut(s) 193, 1110
BsgI GTGCAG 1 cut(s) 729
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 1 cut(s) 145
BsiSI CCGG 3 cut(s) 450, 485, 827
BslFI GGGAC 2 cut(s) 809, 866
BslI CCNNNNNNNGG 2 cut(s) 852, 1028
BsmAI GTCTC 2 cut(s) 879, 995
BsmFI GGGAC 2 cut(s) 809, 866
BsnI GGCC 1 cut(s) 145
Bsp143I GATC 5 cut(s) 18, 172, 187, 498, 658
Bsp19I CCATGG 1 cut(s) 1210
Bsp68I TCGCGA 1 cut(s) 90
BspACI CCGC 2 cut(s) 385, 423
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 1 cut(s) 958
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 532
BspMI ACCTGC 1 cut(s) 1193
BspPI GGATC 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 449
BsrI ACTGG 6 cut(s) 163, 382, 557, 1034, 1093, 1171
BssAI RCCGGY 1 cut(s) 449
BssECI CCNNGG 3 cut(s) 459, 807, 1210
BssMI GATC 5 cut(s) 18, 172, 187, 498, 658
BssT1I CCWWGG 3 cut(s) 459, 807, 1210
Bst2UI CCWGG 3 cut(s) 147, 315, 928
Bst4CI ACNGT 5 cut(s) 56, 77, 869, 1058, 1064
BstBAI YACGTR 1 cut(s) 1077
BstC8I GCNNGC 2 cut(s) 645, 937
BstDEI CTNAG 3 cut(s) 639, 851, 945
BstDSI CCRYGG 1 cut(s) 1210
BstEII GGTNACC 1 cut(s) 1205
BstF5I GGATG 4 cut(s) 258, 298, 481, 985
BstFNI CGCG 1 cut(s) 90
BstKTI GATC 5 cut(s) 21, 175, 190, 501, 661
BstMAI GTCTC 2 cut(s) 879, 995
BstMBI GATC 5 cut(s) 18, 172, 187, 498, 658
BstMWI GCNNNNNNNGC 1 cut(s) 812
BstNI CCWGG 3 cut(s) 147, 315, 928
BstNSI RCATGY 3 cut(s) 244, 363, 824
BstPI GGTNACC 1 cut(s) 1205
BstSCI CCNGG 5 cut(s) 145, 313, 484, 825, 926
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 193, 1110
BstXI CCANNNNNNTGG 1 cut(s) 1166
BsuRI GGCC 1 cut(s) 145
BtgI CCRYGG 1 cut(s) 1210
BtgZI GCGATG 1 cut(s) 141
BtsCI GGATG 4 cut(s) 258, 298, 481, 985
BtsIMutI CAGTG 1 cut(s) 1063
BtuMI TCGCGA 1 cut(s) 90
BveI ACCTGC 1 cut(s) 1193
Cac8I GCNNGC 2 cut(s) 645, 937
CaiI CAGNNNCTG 1 cut(s) 1062
Cfr10I RCCGGY 1 cut(s) 449
Cfr13I GGNCC 2 cut(s) 531, 1031
CseI GACGC 1 cut(s) 380
CsiI ACCWGGT 1 cut(s) 926
Csp6I GTAC 1 cut(s) 582
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 8 cut(s) 241, 360, 413, 502, 692, 821, 878, 1211
CviQI GTAC 1 cut(s) 582
DdeI CTNAG 3 cut(s) 639, 851, 945
DpnI GATC 5 cut(s) 20, 174, 189, 500, 660
DpnII GATC 5 cut(s) 18, 172, 187, 498, 658
DraI TTTAAA 1 cut(s) 969
DriI GACNNNNNGTC 1 cut(s) 871
Eam1105I GACNNNNNGTC 1 cut(s) 871
Eco130I CCWWGG 3 cut(s) 459, 807, 1210
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 2 cut(s) 531, 1031
Eco91I GGTNACC 1 cut(s) 1205
EcoO65I GGTNACC 1 cut(s) 1205
EcoRI GAATTC 1 cut(s) 796
EcoRII CCWGG 3 cut(s) 145, 313, 926
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 3 cut(s) 459, 807, 1210
EcoT22I ATGCAT 2 cut(s) 370, 564
ErhI CCWWGG 3 cut(s) 459, 807, 1210
FaeI CATG 8 cut(s) 244, 363, 416, 505, 695, 824, 881, 1214
FaqI GGGAC 2 cut(s) 809, 866
FatI CATG 8 cut(s) 240, 359, 412, 501, 691, 820, 877, 1210
FbaI TGATCA 2 cut(s) 18, 658
Fnu4HI GCNGC 2 cut(s) 207, 1099
FokI GGATG 4 cut(s) 245, 285, 468, 992
Fsp4HI GCNGC 2 cut(s) 207, 1099
FspBI CTAG 1 cut(s) 1197
GluI GCNGC 2 cut(s) 207, 1099
HaeIII GGCC 1 cut(s) 145
HapII CCGG 3 cut(s) 450, 485, 827
HgaI GACGC 1 cut(s) 380
Hin1II CATG 8 cut(s) 244, 363, 416, 505, 695, 824, 881, 1214
HincII GTYRAC 1 cut(s) 1069
HindII GTYRAC 1 cut(s) 1069
HinfI GANTC 6 cut(s) 85, 686, 755, 941, 1042, 1113
HpaI GTTAAC 1 cut(s) 1069
HpaII CCGG 3 cut(s) 450, 485, 827
HphI GGTGA 3 cut(s) 568, 1096, 1217
Hpy166II GTNNAC 2 cut(s) 1069, 1148
Hpy188I TCNGA 5 cut(s) 156, 181, 685, 781, 1041
Hpy188III TCNNGA 2 cut(s) 89, 302
Hpy8I GTNNAC 2 cut(s) 1069, 1148
Hpy99I CGWCG 1 cut(s) 396
HpyAV CCTTC 2 cut(s) 320, 593
HpyCH4III ACNGT 5 cut(s) 56, 77, 869, 1058, 1064
HpyCH4IV ACGT 2 cut(s) 703, 1076
HpyCH4V TGCA 8 cut(s) 38, 320, 368, 562, 746, 793, 996, 1174
HpyF10VI GCNNNNNNNGC 1 cut(s) 812
HpyF3I CTNAG 3 cut(s) 639, 851, 945
HpySE526I ACGT 2 cut(s) 703, 1076
Hsp92II CATG 8 cut(s) 244, 363, 416, 505, 695, 824, 881, 1214
Ksp22I TGATCA 2 cut(s) 18, 658
KspAI GTTAAC 1 cut(s) 1069
Kzo9I GATC 5 cut(s) 18, 172, 187, 498, 658
LmnI GCTCC 1 cut(s) 1214
Lsp1109I GCAGC 2 cut(s) 193, 1110
LweI GCATC 3 cut(s) 549, 571, 760
MabI ACCWGGT 1 cut(s) 926
MaeI CTAG 1 cut(s) 1197
MaeII ACGT 2 cut(s) 703, 1076
MaeIII GTNAC 3 cut(s) 1058, 1084, 1205
MalI GATC 5 cut(s) 20, 174, 189, 500, 660
MboI GATC 5 cut(s) 18, 172, 187, 498, 658
MboII GAAGA 4 cut(s) 505, 508, 599, 1005
MluCI AATT 5 cut(s) 664, 711, 796, 970, 1009
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 3 cut(s) 179, 202, 758
MnlI CCTC 5 cut(s) 23, 741, 745, 856, 894
Mph1103I ATGCAT 2 cut(s) 370, 564
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 3 cut(s) 968, 1008, 1068
MspA1I CMGCKG 1 cut(s) 385
MspI CCGG 3 cut(s) 450, 485, 827
MspR9I CCNGG 5 cut(s) 147, 315, 486, 827, 928
MvaI CCWGG 3 cut(s) 147, 315, 928
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 812
NciI CCSGG 2 cut(s) 486, 827
NcoI CCATGG 1 cut(s) 1210
NdeII GATC 5 cut(s) 18, 172, 187, 498, 658
NlaIII CATG 8 cut(s) 244, 363, 416, 505, 695, 824, 881, 1214
NlaIV GGNNCC 1 cut(s) 532
NmuCI GTSAC 3 cut(s) 1058, 1084, 1205
NruI TCGCGA 1 cut(s) 90
NsiI ATGCAT 2 cut(s) 370, 564
NspI RCATGY 3 cut(s) 244, 363, 824
PaqCI CACCTGC 1 cut(s) 1193
PciI ACATGT 3 cut(s) 240, 359, 820
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 5 cut(s) 686, 755, 941, 1042, 1113
PfoI TCCNGGA 1 cut(s) 825
PkrI GCNGC 2 cut(s) 208, 1100
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
Ppu21I YACGTR 1 cut(s) 1077
PscI ACATGT 3 cut(s) 240, 359, 820
Psp1406I AACGTT 1 cut(s) 703
Psp6I CCWGG 3 cut(s) 145, 313, 926
PspEI GGTNACC 1 cut(s) 1205
PspGI CCWGG 3 cut(s) 145, 313, 926
PspN4I GGNNCC 1 cut(s) 532
PspPI GGNCC 2 cut(s) 531, 1031
PstNI CAGNNNCTG 1 cut(s) 1062
RruI TCGCGA 1 cut(s) 90
RsaI GTAC 1 cut(s) 583
RsaNI GTAC 1 cut(s) 582
SaqAI TTAA 3 cut(s) 968, 1008, 1068
SatI GCNGC 2 cut(s) 207, 1099
Sau3AI GATC 5 cut(s) 18, 172, 187, 498, 658
Sau96I GGNCC 2 cut(s) 531, 1031
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 5 cut(s) 147, 315, 486, 827, 928
SexAI ACCWGGT 1 cut(s) 926
SfaNI GCATC 3 cut(s) 549, 571, 760
SinI GGWCC 2 cut(s) 531, 1031
SmlI CTYRAG 2 cut(s) 1124, 1133
SmoI CTYRAG 2 cut(s) 1124, 1133
Sse9I AATT 5 cut(s) 664, 711, 796, 970, 1009
SsiI CCGC 2 cut(s) 385, 423
SspMI CTAG 1 cut(s) 1197
StyD4I CCNGG 5 cut(s) 145, 313, 484, 825, 926
StyI CCWWGG 3 cut(s) 459, 807, 1210
TaaI ACNGT 5 cut(s) 56, 77, 869, 1058, 1064
TaiI ACGT 2 cut(s) 706, 1079
TaqI TCGA 1 cut(s) 861
TasI AATT 5 cut(s) 664, 711, 796, 970, 1009
TatI WGTACW 1 cut(s) 581
TfiI GAWTC 5 cut(s) 686, 755, 941, 1042, 1113
Tru1I TTAA 3 cut(s) 968, 1008, 1068
Tru9I TTAA 3 cut(s) 968, 1008, 1068
TscAI CASTG 1 cut(s) 1063
TseFI GTSAC 3 cut(s) 1058, 1084, 1205
TseI GCWGC 2 cut(s) 206, 1098
Tsp45I GTSAC 3 cut(s) 1058, 1084, 1205
TspDTI ATGAA 4 cut(s) 247, 341, 470, 969
TspRI CASTG 1 cut(s) 1063
VpaK11BI GGWCC 2 cut(s) 531, 1031
XapI RAATTY 1 cut(s) 796
XceI RCATGY 3 cut(s) 244, 363, 824
XcmI CCANNNNNNNNNTGG 1 cut(s) 270
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 1 cut(s) 1197
Zsp2I ATGCAT 2 cut(s) 370, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.