RchiOBHm_Chr2g0173191
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006146
Physical Location & Seq
Forward (+)
86283136 .. 86286494
3359 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54042

Sequence Viewer

Length: 1233 bp
ATGTTGGCTTTCATTTTCATGGCTTGGCTGATCAACAGCAGAGGATTTGCAAACAAAGTCAAAAACTGTGCTTCTCAAATCAAAGACTGTGGAGCGAGTCGCGAGTGTCCAAAATGCCATTATCTTATCAGCAACAGCGATGTTTCAACAGAATGGCCTGGCTTTCCGACTGGTGTGAAGTTTGATCCATCTGATACTGATCTCATAGAACATTTAGCTGCGAAAGTTGGTGTTGGAAACTCAAAACCACACATGTTTATTGATGAGTTCATCCCAACTATTGATTGGGATATCGGCATTTGCTACACTCATCCTGAAAACCTTCCTGGTGCAAAGAAAGATGGAAGTAGCTTCCATTTCTTTCATAAAACATGTAATGCATATTCTACTGGTCGGCGGAAGCGTCGCAAGATTGACAAAGAGCATGACTTGGCCGCACAGGCTGTTCGTTGGCACAAGACCGGGAAGACCAAGGCTATAAGAAGTGGAGTTCATCCGGGCTGGAAGAAGATCATGGTGCTGTATAAAAGTTCAATCAAAGGGTCCAAAGCAGATAAGACTGACTGGGTGATGCATCAGTATCATTTGGGAAGTACAGAAGATGAGAAAGAAGGTGAATATGTGGTGTCGAAGATATTCTATCAACAGCCAAAGCAGGCTGACAAGAGTGATCACAATTTGGTCATTGAAGAATCTGAATCCTATGTGCTTCAACGTTCTCCAATTACCCCCATAACAAATCCTCCGACTACTCCTGCACCAGAGGAATCTGCTTGGTGTGATGCTGGTCCTGACGAATATATGCAGAATTCCTATGCCAAGGTAGCAGAACATGTCCCGGAAGTATCTCAATATGCCCAACTTAGGAAGTTCGAGGACAGTATGTCTCATGTCCCTCAACTTGATAGTCAGTTTGAGAACAATGTGGGGCAACCTACCTGGTTGGCAGGCGAATCTCAGGTTGATGAATACTGCGGGTTAAATTGCTTCGATGACACCTTGTTATGCAAGGAGACATTTAATTCTTCCACTCCTCTAAATGGTCCAGTTCTGAATCCCATATCTAACGGTGACTGTGTTAACAACACGTACGGGGTAACTGGAAACAGCAGCACAGCATTTGGAATCCCTGACCTTGAGAACCTCGAGTTTGATAGTCCACCAGATTTCCAGCTAACTGGTTTGCAGTTTTGTTCCCAAGACAGTATACTTGAGTGGTTGGACAGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

410

Amino Acids

45.99

Weight (kDa)

5.4

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 56 - 196 1.7e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1207
AccII CGCG 1 cut(s) 102
AciI CCGC 3 cut(s) 397, 435, 975
AclI AACGTT 1 cut(s) 715
AclWI GGATC 1 cut(s) 179
AcoI YGGCCR 1 cut(s) 432
AcsI RAATTY 1 cut(s) 808
AfaI GTAC 2 cut(s) 595, 1091
AfiI CCNNNNNNNGG 2 cut(s) 864, 1040
AflIII ACRYGT 4 cut(s) 252, 371, 832, 1086
AgsI TTSAA 4 cut(s) 147, 534, 689, 713
AhdI GACNNNNNGTC 1 cut(s) 883
AjnI CCWGG 3 cut(s) 157, 325, 938
AluBI AGCT 3 cut(s) 218, 351, 1174
AluI AGCT 3 cut(s) 218, 351, 1174
Alw26I GTCTC 2 cut(s) 891, 1007
AlwI GGATC 1 cut(s) 179
Ama87I CYCGRG 1 cut(s) 1145
AoxI GGCC 2 cut(s) 155, 432
ApeKI GCWGC 2 cut(s) 218, 1110
ApoI RAATTY 1 cut(s) 808
Asp700I GAANNNNTTC 2 cut(s) 321, 635
AspS9I GGNCC 3 cut(s) 543, 788, 1043
AsuC2I CCSGG 3 cut(s) 463, 498, 839
AsuHPI GGTGA 3 cut(s) 580, 626, 1082
AvaI CYCGRG 1 cut(s) 1145
AvaII GGWCC 3 cut(s) 543, 788, 1043
BbsI GAAGAC 1 cut(s) 473
BbvI GCAGC 2 cut(s) 205, 1122
BccI CCATC 2 cut(s) 196, 335
BciT130I CCWGG 3 cut(s) 159, 327, 940
BclI TGATCA 2 cut(s) 30, 670
BcnI CCSGG 3 cut(s) 463, 498, 839
BcoDI GTCTC 2 cut(s) 891, 1007
BglI GCCNNNNNGGC 1 cut(s) 440
BisI GCNGC 3 cut(s) 219, 435, 1111
BlsI GCNGC 3 cut(s) 220, 436, 1112
Bme1390I CCNGG 6 cut(s) 159, 327, 463, 498, 839, 940
Bme18I GGWCC 3 cut(s) 543, 788, 1043
BmeRI GACNNNNNGTC 1 cut(s) 883
BmeT110I CYCGRG 1 cut(s) 1145
BmgT120I GGNCC 3 cut(s) 543, 788, 1043
BmiI GGNNCC 1 cut(s) 544
BmrFI CCNGG 6 cut(s) 159, 327, 463, 498, 839, 940
BmrI ACTGGG 1 cut(s) 574
BmsI GCATC 3 cut(s) 561, 583, 772
BmuI ACTGGG 1 cut(s) 574
BpiI GAAGAC 1 cut(s) 473
BpuEI CTTGAG 2 cut(s) 1157, 1232
BpuMI CCSGG 3 cut(s) 463, 498, 839
BsaAI YACGTR 1 cut(s) 1089
BsaBI GATNNNNATC 1 cut(s) 198
BsaJI CCNNGG 2 cut(s) 471, 819
BsaXI ACNNNNNCTCC 2 cut(s) 727, 757
Bsc4I CCNNNNNNNGG 2 cut(s) 864, 1040
Bse1I ACTGG 6 cut(s) 175, 394, 569, 1046, 1105, 1183
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 3 cut(s) 159, 327, 940
BseDI CCNNGG 2 cut(s) 471, 819
BseGI GGATG 3 cut(s) 270, 310, 493
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 864, 1040
BseMII CTCAG 1 cut(s) 971
BseNI ACTGG 6 cut(s) 175, 394, 569, 1046, 1105, 1183
BseRI GAGGAG 1 cut(s) 1023
BseXI GCAGC 2 cut(s) 205, 1122
BsgI GTGCAG 1 cut(s) 741
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 2 cut(s) 157, 434
BsiHKCI CYCGRG 1 cut(s) 1145
BsiSI CCGG 3 cut(s) 462, 497, 839
BsiWI CGTACG 1 cut(s) 1089
BslFI GGGAC 2 cut(s) 821, 878
BslI CCNNNNNNNGG 2 cut(s) 864, 1040
BsmAI GTCTC 2 cut(s) 891, 1007
BsmFI GGGAC 2 cut(s) 821, 878
BsnI GGCC 2 cut(s) 157, 434
BsoBI CYCGRG 1 cut(s) 1145
Bsp143I GATC 5 cut(s) 30, 184, 199, 510, 670
Bsp68I TCGCGA 1 cut(s) 102
BspACI CCGC 3 cut(s) 397, 435, 975
BspANI GGCC 2 cut(s) 157, 434
BspCNI CTCAG 1 cut(s) 970
BspFNI CGCG 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 544
BspPI GGATC 1 cut(s) 179
BsrI ACTGG 6 cut(s) 175, 394, 569, 1046, 1105, 1183
BssECI CCNNGG 2 cut(s) 471, 819
BssMI GATC 5 cut(s) 30, 184, 199, 510, 670
BssNAI GTATAC 1 cut(s) 1208
BssT1I CCWWGG 2 cut(s) 471, 819
Bst1107I GTATAC 1 cut(s) 1208
Bst2UI CCWGG 3 cut(s) 159, 327, 940
Bst4CI ACNGT 6 cut(s) 68, 89, 881, 1070, 1076, 1205
BstBAI YACGTR 1 cut(s) 1089
BstC8I GCNNGC 2 cut(s) 657, 949
BstDEI CTNAG 2 cut(s) 863, 957
BstF5I GGATG 3 cut(s) 270, 310, 493
BstFNI CGCG 1 cut(s) 102
BstKTI GATC 5 cut(s) 33, 187, 202, 513, 673
BstMAI GTCTC 2 cut(s) 891, 1007
BstMBI GATC 5 cut(s) 30, 184, 199, 510, 670
BstMWI GCNNNNNNNGC 2 cut(s) 440, 824
BstNI CCWGG 3 cut(s) 159, 327, 940
BstNSI RCATGY 3 cut(s) 256, 375, 836
BstSCI CCNGG 6 cut(s) 157, 325, 461, 496, 837, 938
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 205, 1122
BstV2I GAAGAC 1 cut(s) 473
BstXI CCANNNNNNTGG 1 cut(s) 1178
BstZ17I GTATAC 1 cut(s) 1208
BsuRI GGCC 2 cut(s) 157, 434
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 3 cut(s) 270, 310, 493
BtuMI TCGCGA 1 cut(s) 102
Cac8I GCNNGC 2 cut(s) 657, 949
Cfr13I GGNCC 3 cut(s) 543, 788, 1043
CseI GACGC 1 cut(s) 392
CsiI ACCWGGT 1 cut(s) 938
Csp6I GTAC 2 cut(s) 594, 1090
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CviAII CATG 7 cut(s) 19, 253, 372, 425, 514, 833, 890
CviQI GTAC 2 cut(s) 594, 1090
DdeI CTNAG 2 cut(s) 863, 957
DpnI GATC 5 cut(s) 32, 186, 201, 512, 672
DpnII GATC 5 cut(s) 30, 184, 199, 510, 670
DriI GACNNNNNGTC 1 cut(s) 883
EaeI YGGCCR 1 cut(s) 432
Eam1105I GACNNNNNGTC 1 cut(s) 883
EciI GGCGGA 1 cut(s) 412
Eco130I CCWWGG 2 cut(s) 471, 819
Eco32I GATATC 1 cut(s) 292
Eco47I GGWCC 3 cut(s) 543, 788, 1043
Eco88I CYCGRG 1 cut(s) 1145
EcoRI GAATTC 1 cut(s) 808
EcoRII CCWGG 3 cut(s) 157, 325, 938
EcoRV GATATC 1 cut(s) 292
EcoT14I CCWWGG 2 cut(s) 471, 819
EcoT22I ATGCAT 2 cut(s) 382, 576
ErhI CCWWGG 2 cut(s) 471, 819
FaeI CATG 7 cut(s) 22, 256, 375, 428, 517, 836, 893
FaqI GGGAC 2 cut(s) 821, 878
FatI CATG 7 cut(s) 18, 252, 371, 424, 513, 832, 889
FauI CCCGC 1 cut(s) 968
FbaI TGATCA 2 cut(s) 30, 670
FblI GTMKAC 1 cut(s) 1207
Fnu4HI GCNGC 3 cut(s) 219, 435, 1111
FokI GGATG 3 cut(s) 257, 297, 480
Fsp4HI GCNGC 3 cut(s) 219, 435, 1111
GluI GCNGC 3 cut(s) 219, 435, 1111
HaeIII GGCC 2 cut(s) 157, 434
HapII CCGG 3 cut(s) 462, 497, 839
HgaI GACGC 1 cut(s) 392
Hin1II CATG 7 cut(s) 22, 256, 375, 428, 517, 836, 893
HincII GTYRAC 1 cut(s) 1081
HindII GTYRAC 1 cut(s) 1081
HinfI GANTC 7 cut(s) 97, 692, 698, 767, 953, 1054, 1125
HpaI GTTAAC 1 cut(s) 1081
HpaII CCGG 3 cut(s) 462, 497, 839
HphI GGTGA 3 cut(s) 580, 626, 1082
Hpy166II GTNNAC 3 cut(s) 1081, 1160, 1208
Hpy188I TCNGA 5 cut(s) 168, 193, 697, 747, 1053
Hpy188III TCNNGA 3 cut(s) 101, 314, 791
Hpy8I GTNNAC 3 cut(s) 1081, 1160, 1208
Hpy99I CGWCG 1 cut(s) 408
HpyAV CCTTC 2 cut(s) 332, 605
HpyCH4III ACNGT 6 cut(s) 68, 89, 881, 1070, 1076, 1205
HpyCH4IV ACGT 2 cut(s) 715, 1088
HpyCH4V TGCA 8 cut(s) 50, 332, 380, 574, 758, 805, 1008, 1186
HpyF10VI GCNNNNNNNGC 2 cut(s) 440, 824
HpyF3I CTNAG 2 cut(s) 863, 957
HpySE526I ACGT 2 cut(s) 715, 1088
Hsp92II CATG 7 cut(s) 22, 256, 375, 428, 517, 836, 893
Ksp22I TGATCA 2 cut(s) 30, 670
KspAI GTTAAC 1 cut(s) 1081
Kzo9I GATC 5 cut(s) 30, 184, 199, 510, 670
LmnI GCTCC 1 cut(s) 92
Lsp1109I GCAGC 2 cut(s) 205, 1122
LweI GCATC 3 cut(s) 561, 583, 772
MabI ACCWGGT 1 cut(s) 938
MaeII ACGT 2 cut(s) 715, 1088
MaeIII GTNAC 2 cut(s) 1070, 1096
MalI GATC 5 cut(s) 32, 186, 201, 512, 672
MboI GATC 5 cut(s) 30, 184, 199, 510, 670
MboII GAAGA 7 cut(s) 478, 517, 520, 611, 643, 701, 1017
MluCI AATT 5 cut(s) 676, 723, 808, 982, 1021
MlyI GAGTC 1 cut(s) 106
MmeI TCCRAC 4 cut(s) 191, 214, 770, 1200
MnlI CCTC 7 cut(s) 35, 753, 757, 868, 906, 1044, 1154
Mph1103I ATGCAT 2 cut(s) 382, 576
MroXI GAANNNNTTC 2 cut(s) 321, 635
MseI TTAA 3 cut(s) 980, 1020, 1080
MslI CAYNNNNRTG 1 cut(s) 17
MspI CCGG 3 cut(s) 462, 497, 839
MspR9I CCNGG 6 cut(s) 159, 327, 463, 498, 839, 940
MvaI CCWGG 3 cut(s) 159, 327, 940
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 440, 824
NciI CCSGG 3 cut(s) 463, 498, 839
NdeII GATC 5 cut(s) 30, 184, 199, 510, 670
NlaIII CATG 7 cut(s) 22, 256, 375, 428, 517, 836, 893
NlaIV GGNNCC 1 cut(s) 544
NmuCI GTSAC 1 cut(s) 1070
NruI TCGCGA 1 cut(s) 102
NsiI ATGCAT 2 cut(s) 382, 576
NspI RCATGY 3 cut(s) 256, 375, 836
PaeR7I CTCGAG 1 cut(s) 1145
PciI ACATGT 3 cut(s) 252, 371, 832
PcsI WCGNNNNNNNCGW 1 cut(s) 400
PdmI GAANNNNTTC 2 cut(s) 321, 635
PfeI GAWTC 6 cut(s) 692, 698, 767, 953, 1054, 1125
Pfl23II CGTACG 1 cut(s) 1089
PfoI TCCNGGA 1 cut(s) 837
PkrI GCNGC 3 cut(s) 220, 436, 1112
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
Ppu21I YACGTR 1 cut(s) 1089
PscI ACATGT 3 cut(s) 252, 371, 832
Psp1406I AACGTT 1 cut(s) 715
Psp6I CCWGG 3 cut(s) 157, 325, 938
PspGI CCWGG 3 cut(s) 157, 325, 938
PspLI CGTACG 1 cut(s) 1089
PspN4I GGNNCC 1 cut(s) 544
PspPI GGNCC 3 cut(s) 543, 788, 1043
PspXI VCTCGAGB 1 cut(s) 1145
RruI TCGCGA 1 cut(s) 102
RsaI GTAC 2 cut(s) 595, 1091
RsaNI GTAC 2 cut(s) 594, 1090
RseI CAYNNNNRTG 1 cut(s) 17
SaqAI TTAA 3 cut(s) 980, 1020, 1080
SatI GCNGC 3 cut(s) 219, 435, 1111
Sau3AI GATC 5 cut(s) 30, 184, 199, 510, 670
Sau96I GGNCC 3 cut(s) 543, 788, 1043
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 6 cut(s) 159, 327, 463, 498, 839, 940
SexAI ACCWGGT 1 cut(s) 938
SfaNI GCATC 3 cut(s) 561, 583, 772
Sfr274I CTCGAG 1 cut(s) 1145
SinI GGWCC 3 cut(s) 543, 788, 1043
SlaI CTCGAG 1 cut(s) 1145
SmiMI CAYNNNNRTG 1 cut(s) 17
SmlI CTYRAG 3 cut(s) 1136, 1145, 1211
SmoI CTYRAG 3 cut(s) 1136, 1145, 1211
Sse9I AATT 5 cut(s) 676, 723, 808, 982, 1021
SsiI CCGC 3 cut(s) 397, 435, 975
StyD4I CCNGG 6 cut(s) 157, 325, 461, 496, 837, 938
StyI CCWWGG 2 cut(s) 471, 819
TaaI ACNGT 6 cut(s) 68, 89, 881, 1070, 1076, 1205
TaiI ACGT 2 cut(s) 718, 1091
TaqI TCGA 4 cut(s) 629, 873, 990, 1146
TasI AATT 5 cut(s) 676, 723, 808, 982, 1021
TatI WGTACW 1 cut(s) 593
TauI GCSGC 1 cut(s) 437
TfiI GAWTC 6 cut(s) 692, 698, 767, 953, 1054, 1125
Tru1I TTAA 3 cut(s) 980, 1020, 1080
Tru9I TTAA 3 cut(s) 980, 1020, 1080
TseFI GTSAC 1 cut(s) 1070
TseI GCWGC 2 cut(s) 218, 1110
Tsp45I GTSAC 1 cut(s) 1070
TspDTI ATGAA 5 cut(s) 7, 259, 353, 482, 981
VpaK11BI GGWCC 3 cut(s) 543, 788, 1043
XapI RAATTY 1 cut(s) 808
XceI RCATGY 3 cut(s) 256, 375, 836
XcmI CCANNNNNNNNNTGG 1 cut(s) 282
XhoI CTCGAG 1 cut(s) 1145
XmiI GTMKAC 1 cut(s) 1207
XmnI GAANNNNTTC 2 cut(s) 321, 635
Zsp2I ATGCAT 2 cut(s) 382, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.