Rroxscaffold_2G00079130
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006146
Physical Location & Seq
Reverse (-)
2216141 .. 2218874
2734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00079130.1

Sequence Viewer

Length: 1353 bp
ATGTGGCTTCTCTGTTGGTTACTTTATCTTGTTACTGAAAACTGTAATGTAACTGAGATTGAGGCTAATGCAGTATATAATTCTTGTAGGGCTTGGCTGATCAACAGCAGAGGATTTGCAAACAAGGTCAAAAACTGTGCTTCTCAAATCAAAGACTGTGGGGCGAGTCGCGAGTGTCCAAAATGCCATTATCTTATCAGCAACAGCGATGTTTCAACAGAATGGCCTGGCTTTCCAACTGGTGTGAAGTTTGATCCATCTGATACTGATCTCATAGAACATTTATCTGCGAAAGTTGGTGTTGGAAACTCAAAACCACACATGTTTATTGATGAGTTCATCCCAACTATTGATTGGGATATCGGCATTTGCTACACTCATCCTGAAAACCTTCCTGGTGCAAAGAAAGATGGAAGTAGCTTCCATTTCTTTCATAAAACATGTAATGCATATTCTACTGGTAGGCGGAAGCGTCGCAAGATTGACAAAGAGCATGACTTGGCCGCACAGGCTGTTCGTTGGCACAAGACCGGCAAGACCAAGGCTATAAGAAGTGGAGTTCATCCGGGCTGGAAGAAGATCATGGTGCTGTATAAAAGTTCAATCAAAGGGTCCAAAGCAGATAAGACTGACTGGGTGATGCATCAGTATCATTTGGGAAGTACAGAAGATGAGAAAGAAGGTGAATATGTGGTGTCAAAGATATTCTATCAACAGCCTAAGCAGACTGACAAGAATGATCACAATGTGGTCATTGAAGAATCTGAATCCTATGTGCTTCAACATTCTCCAATTACCCCCATAACAAATCCTCCAACTACTCCTGCACCAGAGGAATCTGCTTGGTGTGATGCTGGTCCTGACGAATATATGCAGAATTCCTATGCCAAGGTAGCAGAACATGTCCCGGAAGTATCTCAATATGCCCAACTTAGGAAGTTCGAGGACAGTATGTCTCATGTCCCTCAACTTGATAGTCAGTTTGAGAACAATATGGGGCAACCTACCTGGTTGGCAGGCGAATCTCAGGCTGATGAATACTGCGGTTTAAATTGCTTGGATGACACCTTGTTATGCAAGGAGACATTTAATTCTTCCACTCCTCTAAATGGTCCAGTTCTGAATCCCATATCTAACGGTGACTGTGTTAGCAACACGTACGGGGTGACTGGAAACAGCAGCACAGCATTTGGAATCCCTGACCTTGAGAACCTCGAGTTTGATAGTCCGCCACAATTCCATCTAACTGTTGTGAATGAGCTTCCGGGAATGAAACTGAATTCCCAATTTTGTTCAATCCCAGCTTCTAGGGCAGGTGACCATGGAGCTACAAATGCAAGGATGCTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

450

Amino Acids

50.21

Weight (kDa)

5.64

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 79 - 219 2.8e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1304
Acc36I ACCTGC 1 cut(s) 1304
AccII CGCG 1 cut(s) 171
AciI CCGC 4 cut(s) 466, 504, 1044, 1229
AclWI GGATC 1 cut(s) 248
AcoI YGGCCR 1 cut(s) 501
AcsI RAATTY 2 cut(s) 877, 1279
AdeI CACNNNGTG 1 cut(s) 748
AfaI GTAC 2 cut(s) 664, 1160
AfiI CCNNNNNNNGG 2 cut(s) 933, 1109
AflIII ACRYGT 4 cut(s) 321, 440, 901, 1155
AgsI TTSAA 5 cut(s) 216, 603, 758, 782, 1296
AhdI GACNNNNNGTC 1 cut(s) 952
AjnI CCWGG 3 cut(s) 226, 394, 1007
AluBI AGCT 4 cut(s) 420, 1261, 1304, 1328
AluI AGCT 4 cut(s) 420, 1261, 1304, 1328
Alw26I GTCTC 2 cut(s) 960, 1076
AlwI GGATC 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 1214
AoxI GGCC 2 cut(s) 224, 501
ApeKI GCWGC 1 cut(s) 1179
ApoI RAATTY 2 cut(s) 877, 1279
Asp700I GAANNNNTTC 1 cut(s) 390
AspS9I GGNCC 3 cut(s) 612, 857, 1112
AsuC2I CCSGG 3 cut(s) 567, 908, 1266
AsuHPI GGTGA 5 cut(s) 649, 695, 1151, 1177, 1328
AvaI CYCGRG 1 cut(s) 1214
AvaII GGWCC 3 cut(s) 612, 857, 1112
BbvI GCAGC 1 cut(s) 1191
BccI CCATC 3 cut(s) 265, 404, 1248
BciT130I CCWGG 3 cut(s) 228, 396, 1009
BclI TGATCA 2 cut(s) 99, 739
BcnI CCSGG 3 cut(s) 567, 908, 1266
BcoDI GTCTC 2 cut(s) 960, 1076
BfaI CTAG 1 cut(s) 1308
BfuAI ACCTGC 1 cut(s) 1304
BglI GCCNNNNNGGC 1 cut(s) 509
BisI GCNGC 2 cut(s) 504, 1180
BlsI GCNGC 2 cut(s) 505, 1181
Bme1390I CCNGG 6 cut(s) 228, 396, 567, 908, 1009, 1266
Bme18I GGWCC 3 cut(s) 612, 857, 1112
BmeRI GACNNNNNGTC 1 cut(s) 952
BmeT110I CYCGRG 1 cut(s) 1214
BmgT120I GGNCC 3 cut(s) 612, 857, 1112
BmiI GGNNCC 1 cut(s) 613
BmrFI CCNGG 6 cut(s) 228, 396, 567, 908, 1009, 1266
BmrI ACTGGG 1 cut(s) 643
BmsI GCATC 4 cut(s) 630, 652, 841, 1332
BmuI ACTGGG 1 cut(s) 643
Bpu10I CCTNAGC 1 cut(s) 720
BpuEI CTTGAG 1 cut(s) 1226
BpuMI CCSGG 3 cut(s) 567, 908, 1266
BsaAI YACGTR 1 cut(s) 1158
BsaBI GATNNNNATC 1 cut(s) 267
BsaJI CCNNGG 3 cut(s) 540, 888, 1321
BsaXI ACNNNNNCTCC 2 cut(s) 796, 826
Bsc4I CCNNNNNNNGG 2 cut(s) 933, 1109
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 5 cut(s) 244, 463, 638, 1115, 1174
Bse8I GATNNNNATC 1 cut(s) 267
BseBI CCWGG 3 cut(s) 228, 396, 1009
BseDI CCNNGG 3 cut(s) 540, 888, 1321
BseGI GGATG 5 cut(s) 339, 379, 562, 1066, 1347
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 2 cut(s) 933, 1109
BseMII CTCAG 2 cut(s) 45, 1040
BseNI ACTGG 5 cut(s) 244, 463, 638, 1115, 1174
BseRI GAGGAG 1 cut(s) 1092
BseXI GCAGC 1 cut(s) 1191
BseYI CCCAGC 1 cut(s) 1300
BsgI GTGCAG 1 cut(s) 810
Bsh1236I CGCG 1 cut(s) 171
BshFI GGCC 2 cut(s) 226, 503
BsiHKCI CYCGRG 1 cut(s) 1214
BsiSI CCGG 4 cut(s) 531, 566, 908, 1265
BsiWI CGTACG 1 cut(s) 1158
BslFI GGGAC 2 cut(s) 890, 947
BslI CCNNNNNNNGG 2 cut(s) 933, 1109
BsmAI GTCTC 2 cut(s) 960, 1076
BsmFI GGGAC 2 cut(s) 890, 947
BsnI GGCC 2 cut(s) 226, 503
BsoBI CYCGRG 1 cut(s) 1214
Bsp143I GATC 5 cut(s) 99, 253, 268, 579, 739
Bsp19I CCATGG 1 cut(s) 1321
Bsp68I TCGCGA 1 cut(s) 171
BspACI CCGC 4 cut(s) 466, 504, 1044, 1229
BspANI GGCC 2 cut(s) 226, 503
BspCNI CTCAG 2 cut(s) 46, 1039
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 613
BspMI ACCTGC 1 cut(s) 1304
BspPI GGATC 1 cut(s) 248
BsrFI RCCGGY 1 cut(s) 530
BsrI ACTGG 5 cut(s) 244, 463, 638, 1115, 1174
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 3 cut(s) 540, 888, 1321
BssMI GATC 5 cut(s) 99, 253, 268, 579, 739
BssT1I CCWWGG 3 cut(s) 540, 888, 1321
Bst2UI CCWGG 3 cut(s) 228, 396, 1009
Bst4CI ACNGT 7 cut(s) 44, 137, 158, 950, 1139, 1145, 1249
BstBAI YACGTR 1 cut(s) 1158
BstC8I GCNNGC 1 cut(s) 1018
BstDEI CTNAG 4 cut(s) 54, 720, 932, 1026
BstDSI CCRYGG 1 cut(s) 1321
BstEII GGTNACC 1 cut(s) 1316
BstF5I GGATG 5 cut(s) 339, 379, 562, 1066, 1347
BstFNI CGCG 1 cut(s) 171
BstKTI GATC 5 cut(s) 102, 256, 271, 582, 742
BstMAI GTCTC 2 cut(s) 960, 1076
BstMBI GATC 5 cut(s) 99, 253, 268, 579, 739
BstMWI GCNNNNNNNGC 4 cut(s) 509, 893, 1310, 1334
BstNI CCWGG 3 cut(s) 228, 396, 1009
BstNSI RCATGY 3 cut(s) 325, 444, 905
BstPI GGTNACC 1 cut(s) 1316
BstSCI CCNGG 6 cut(s) 226, 394, 565, 906, 1007, 1264
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 1191
BsuRI GGCC 2 cut(s) 226, 503
BtgI CCRYGG 1 cut(s) 1321
BtgZI GCGATG 1 cut(s) 222
BtsCI GGATG 5 cut(s) 339, 379, 562, 1066, 1347
BtuMI TCGCGA 1 cut(s) 171
BveI ACCTGC 1 cut(s) 1304
Cac8I GCNNGC 1 cut(s) 1018
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 3 cut(s) 612, 857, 1112
CseI GACGC 1 cut(s) 461
CsiI ACCWGGT 1 cut(s) 1007
Csp6I GTAC 2 cut(s) 663, 1159
CspCI CAANNNNNGTGG 2 cut(s) 139, 174
CviAII CATG 7 cut(s) 322, 441, 494, 583, 902, 959, 1322
CviQI GTAC 2 cut(s) 663, 1159
DdeI CTNAG 4 cut(s) 54, 720, 932, 1026
DpnI GATC 5 cut(s) 101, 255, 270, 581, 741
DpnII GATC 5 cut(s) 99, 253, 268, 579, 739
DraI TTTAAA 1 cut(s) 1050
DraIII CACNNNGTG 1 cut(s) 748
DriI GACNNNNNGTC 1 cut(s) 952
EaeI YGGCCR 1 cut(s) 501
Eam1105I GACNNNNNGTC 1 cut(s) 952
EciI GGCGGA 2 cut(s) 481, 1218
Eco130I CCWWGG 3 cut(s) 540, 888, 1321
Eco32I GATATC 1 cut(s) 361
Eco47I GGWCC 3 cut(s) 612, 857, 1112
Eco88I CYCGRG 1 cut(s) 1214
Eco91I GGTNACC 1 cut(s) 1316
EcoO65I GGTNACC 1 cut(s) 1316
EcoRI GAATTC 2 cut(s) 877, 1279
EcoRII CCWGG 3 cut(s) 226, 394, 1007
EcoRV GATATC 1 cut(s) 361
EcoT14I CCWWGG 3 cut(s) 540, 888, 1321
EcoT22I ATGCAT 2 cut(s) 451, 645
ErhI CCWWGG 3 cut(s) 540, 888, 1321
FaeI CATG 7 cut(s) 325, 444, 497, 586, 905, 962, 1325
FaqI GGGAC 2 cut(s) 890, 947
FatI CATG 7 cut(s) 321, 440, 493, 582, 901, 958, 1321
FbaI TGATCA 2 cut(s) 99, 739
Fnu4HI GCNGC 2 cut(s) 504, 1180
FokI GGATG 4 cut(s) 326, 366, 549, 1073
Fsp4HI GCNGC 2 cut(s) 504, 1180
FspBI CTAG 1 cut(s) 1308
GluI GCNGC 2 cut(s) 504, 1180
GsaI CCCAGC 1 cut(s) 1304
HaeIII GGCC 2 cut(s) 226, 503
HapII CCGG 4 cut(s) 531, 566, 908, 1265
HgaI GACGC 1 cut(s) 461
Hin1II CATG 7 cut(s) 325, 444, 497, 586, 905, 962, 1325
HinfI GANTC 7 cut(s) 166, 761, 767, 836, 1022, 1123, 1194
HpaII CCGG 4 cut(s) 531, 566, 908, 1265
HphI GGTGA 5 cut(s) 649, 695, 1151, 1177, 1328
Hpy188I TCNGA 3 cut(s) 262, 766, 1122
Hpy188III TCNNGA 3 cut(s) 170, 383, 860
Hpy99I CGWCG 1 cut(s) 477
HpyAV CCTTC 2 cut(s) 401, 674
HpyCH4III ACNGT 7 cut(s) 44, 137, 158, 950, 1139, 1145, 1249
HpyCH4IV ACGT 1 cut(s) 1157
HpyCH4V TGCA 9 cut(s) 71, 119, 401, 449, 643, 827, 874, 1077, 1337
HpyF10VI GCNNNNNNNGC 4 cut(s) 509, 893, 1310, 1334
HpyF3I CTNAG 4 cut(s) 54, 720, 932, 1026
HpySE526I ACGT 1 cut(s) 1157
Hsp92II CATG 7 cut(s) 325, 444, 497, 586, 905, 962, 1325
Ksp22I TGATCA 2 cut(s) 99, 739
Kzo9I GATC 5 cut(s) 99, 253, 268, 579, 739
LmnI GCTCC 1 cut(s) 1325
Lsp1109I GCAGC 1 cut(s) 1191
LweI GCATC 4 cut(s) 630, 652, 841, 1332
MabI ACCWGGT 1 cut(s) 1007
MaeI CTAG 1 cut(s) 1308
MaeII ACGT 1 cut(s) 1157
MaeIII GTNAC 6 cut(s) 18, 31, 49, 1139, 1165, 1316
MalI GATC 5 cut(s) 101, 255, 270, 581, 741
MboI GATC 5 cut(s) 99, 253, 268, 579, 739
MboII GAAGA 5 cut(s) 586, 589, 680, 770, 1086
MluCI AATT 8 cut(s) 79, 792, 877, 1051, 1090, 1235, 1279, 1286
MlyI GAGTC 1 cut(s) 175
MmeI TCCRAC 3 cut(s) 260, 283, 839
MnlI CCTC 8 cut(s) 55, 104, 822, 826, 937, 975, 1113, 1223
Mph1103I ATGCAT 2 cut(s) 451, 645
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 2 cut(s) 1049, 1089
MspI CCGG 4 cut(s) 531, 566, 908, 1265
MspR9I CCNGG 6 cut(s) 228, 396, 567, 908, 1009, 1266
MvaI CCWGG 3 cut(s) 228, 396, 1009
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 4 cut(s) 509, 893, 1310, 1334
NciI CCSGG 3 cut(s) 567, 908, 1266
NcoI CCATGG 1 cut(s) 1321
NdeII GATC 5 cut(s) 99, 253, 268, 579, 739
NlaIII CATG 7 cut(s) 325, 444, 497, 586, 905, 962, 1325
NlaIV GGNNCC 1 cut(s) 613
NmuCI GTSAC 3 cut(s) 1139, 1165, 1316
NruI TCGCGA 1 cut(s) 171
NsiI ATGCAT 2 cut(s) 451, 645
NspI RCATGY 3 cut(s) 325, 444, 905
PaeR7I CTCGAG 1 cut(s) 1214
PaqCI CACCTGC 1 cut(s) 1304
PciI ACATGT 3 cut(s) 321, 440, 901
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 6 cut(s) 761, 767, 836, 1022, 1123, 1194
Pfl23II CGTACG 1 cut(s) 1158
PfoI TCCNGGA 2 cut(s) 906, 1264
PkrI GCNGC 2 cut(s) 505, 1181
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
Ppu21I YACGTR 1 cut(s) 1158
PscI ACATGT 3 cut(s) 321, 440, 901
Psp6I CCWGG 3 cut(s) 226, 394, 1007
PspEI GGTNACC 1 cut(s) 1316
PspFI CCCAGC 1 cut(s) 1300
PspGI CCWGG 3 cut(s) 226, 394, 1007
PspLI CGTACG 1 cut(s) 1158
PspN4I GGNNCC 1 cut(s) 613
PspPI GGNCC 3 cut(s) 612, 857, 1112
PspXI VCTCGAGB 1 cut(s) 1214
RruI TCGCGA 1 cut(s) 171
RsaI GTAC 2 cut(s) 664, 1160
RsaNI GTAC 2 cut(s) 663, 1159
SaqAI TTAA 2 cut(s) 1049, 1089
SatI GCNGC 2 cut(s) 504, 1180
Sau3AI GATC 5 cut(s) 99, 253, 268, 579, 739
Sau96I GGNCC 3 cut(s) 612, 857, 1112
SchI GAGTC 1 cut(s) 175
ScrFI CCNGG 6 cut(s) 228, 396, 567, 908, 1009, 1266
SexAI ACCWGGT 1 cut(s) 1007
SfaNI GCATC 4 cut(s) 630, 652, 841, 1332
Sfr274I CTCGAG 1 cut(s) 1214
SinI GGWCC 3 cut(s) 612, 857, 1112
SlaI CTCGAG 1 cut(s) 1214
SmlI CTYRAG 2 cut(s) 1205, 1214
SmoI CTYRAG 2 cut(s) 1205, 1214
Sse9I AATT 8 cut(s) 79, 792, 877, 1051, 1090, 1235, 1279, 1286
SsiI CCGC 4 cut(s) 466, 504, 1044, 1229
SspMI CTAG 1 cut(s) 1308
StyD4I CCNGG 6 cut(s) 226, 394, 565, 906, 1007, 1264
StyI CCWWGG 3 cut(s) 540, 888, 1321
TaaI ACNGT 7 cut(s) 44, 137, 158, 950, 1139, 1145, 1249
TaiI ACGT 1 cut(s) 1160
TaqI TCGA 2 cut(s) 942, 1215
TasI AATT 8 cut(s) 79, 792, 877, 1051, 1090, 1235, 1279, 1286
TatI WGTACW 1 cut(s) 662
TauI GCSGC 1 cut(s) 506
TfiI GAWTC 6 cut(s) 761, 767, 836, 1022, 1123, 1194
Tru1I TTAA 2 cut(s) 1049, 1089
Tru9I TTAA 2 cut(s) 1049, 1089
TseFI GTSAC 3 cut(s) 1139, 1165, 1316
TseI GCWGC 1 cut(s) 1179
Tsp45I GTSAC 3 cut(s) 1139, 1165, 1316
TspDTI ATGAA 5 cut(s) 328, 422, 551, 1050, 1286
VpaK11BI GGWCC 3 cut(s) 612, 857, 1112
XapI RAATTY 2 cut(s) 877, 1279
XceI RCATGY 3 cut(s) 325, 444, 905
XcmI CCANNNNNNNNNTGG 1 cut(s) 351
XhoI CTCGAG 1 cut(s) 1214
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 1 cut(s) 1308
Zsp2I ATGCAT 2 cut(s) 451, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.