MD09G1023600.v1.1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0006146
Physical Location & Seq
Reverse (-)
1412641 .. 1416096
3456 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1023600.v1.1.491

Sequence Viewer

Length: 1176 bp
ATGGCAAGGACTTGGCTGATTAACAGCAGAGGACTTGCAAACAAAGTGAAGAATGCTTCTCAATCGTCTGCGTGTCCAATCAAAGACTGTGGGGCAAATCGTGAATGCCCGAATTGCCATTTTGTTATAGATAACAGTGATGTTTTATCGGAATGGCCTGGCTTACCAGTTGGTGTGAAGTTTGATCCATCTGATGGTGAACTCTTAGAACACTTAGCAGCTAAGTGTGGCGTTGGAAACTCACAGCCACACATGTTTATTGCTGAGTTCATCCCAACACTTGAGGGGGACAATGGAATTTACTGTGATCATCCTGAAAACCTTCCTGGTGCAACAAAAGATGGAAGCAGCATCCATTTCTTCCACAAAACAATGAATGCATATGCTACTGGTCAGAGGAAGCGCCGCAAGGTTGATAGTCAACGTAGTGTGGCTGCAGAGAATGTCCGCTGGCACAAAACGGGTAAGACCAAGGCTTTAATAGAAAATGGAATTAAGGGCTGGAAGAAGATCATGGTTCTATACAAAAGTTCGAAGAAAGGTTCCAAAGCAGAGAAGATGAACTGGGTGATGCATCAGTATCACCTGGGAGCTGAAGATGATGAGAAAGAAGGTGAATATGTGGTGTCGAAGATATTCTACCAACAGCATAAGCAGTCAGAAACGAATGATAACAATGTGGTTGTTGAAGACTCTGATGTCAACGCACTTCAAACTAGTCCCAGGACCCCCGTAACCAATCCTCCAATTCCACCCAGACCAGGGAAATCTGTTTGGTGTGATGATGTTCCTGATGAAGCTGTGCTTCCCTCATCTTCCAAGGAAGCGGAGCTAGTCCAGGAAGCATATCATGTCCCTCAATCTGATACTCAGTTTGAGGACAACATTGGGCAGCCTACCTGGCTGGCAGGCGAATCTCAGGCTGACGATTTAGATAGCTTGGGCGAAACCTTGTTATGCAAGGAGATTTTTGGTTATTCCACTCTTCTAAATGATTCAGCACCGAATCCCACTGACTTTAATAACAATACCTACGGGGTGACTGGAAACAGCAGCACATCGTGTGGAATTCATGACCTTGAAAACATTGAACTTGATTCTCCTCCAGATTTCCAGCTAGCTGATTTGCAGTTTTGTTCCCAAGACAGTTTATTTAATTGGCTCGACAGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

392

Amino Acids

43.35

Weight (kDa)

5.03

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 56 - 196 4.2e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 698
AccB7I CCANNNNNTGG 1 cut(s) 194
AciI CCGC 3 cut(s) 406, 448, 827
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 2 cut(s) 297, 1068
AcuI CTGAAG 1 cut(s) 615
AdeI CACNNNGTG 1 cut(s) 1062
AfiI CCNNNNNNNGG 3 cut(s) 194, 761, 762
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 4 cut(s) 689, 713, 1082, 1091
AhlI ACTAGT 1 cut(s) 716
AjnI CCWGG 7 cut(s) 157, 325, 585, 722, 760, 837, 899
AluBI AGCT 7 cut(s) 221, 593, 800, 832, 939, 1117, 1121
AluI AGCT 7 cut(s) 221, 593, 800, 832, 939, 1117, 1121
AlwI GGATC 1 cut(s) 179
AoxI GGCC 1 cut(s) 155
ApeKI GCWGC 5 cut(s) 218, 348, 434, 892, 1053
ApoI RAATTY 2 cut(s) 297, 1068
Asp700I GAANNNNTTC 2 cut(s) 321, 635
AspLEI GCGC 1 cut(s) 405
AspS9I GGNCC 1 cut(s) 726
AsuHPI GGTGA 5 cut(s) 209, 575, 580, 626, 1051
AsuII TTCGAA 1 cut(s) 533
AsuNHI GCTAGC 1 cut(s) 1117
AvaII GGWCC 1 cut(s) 726
BarI GAAGNNNNNNTAC 2 cut(s) 623, 655
BbsI GAAGAC 1 cut(s) 696
BbvI GCAGC 5 cut(s) 230, 360, 421, 904, 1065
BccI CCATC 3 cut(s) 188, 196, 335
BciT130I CCWGG 7 cut(s) 159, 327, 587, 724, 762, 839, 901
BclI TGATCA 1 cut(s) 307
BcuI ACTAGT 1 cut(s) 716
BfaI CTAG 3 cut(s) 717, 833, 1118
BfmI CTRYAG 1 cut(s) 435
BfoI RGCGCY 1 cut(s) 406
BglI GCCNNNNNGGC 1 cut(s) 901
BisI GCNGC 6 cut(s) 219, 349, 406, 435, 893, 1054
BlsI GCNGC 6 cut(s) 220, 350, 407, 436, 894, 1055
Bme1390I CCNGG 7 cut(s) 159, 327, 587, 724, 762, 839, 901
Bme18I GGWCC 1 cut(s) 726
BmgT120I GGNCC 1 cut(s) 726
BmiI GGNNCC 2 cut(s) 544, 728
BmrFI CCNGG 7 cut(s) 159, 327, 587, 724, 762, 839, 901
BmrI ACTGGG 1 cut(s) 574
BmsI GCATC 3 cut(s) 360, 561, 583
BmtI GCTAGC 1 cut(s) 1121
BmuI ACTGGG 1 cut(s) 574
BpiI GAAGAC 1 cut(s) 696
BpmI CTGGAG 1 cut(s) 1089
Bpu14I TTCGAA 1 cut(s) 533
BpuEI CTTGAG 1 cut(s) 302
BsaJI CCNNGG 5 cut(s) 471, 586, 722, 761, 819
BsaXI ACNNNNNCTCC 2 cut(s) 727, 757
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 761, 762
Bse1I ACTGG 4 cut(s) 167, 394, 569, 1048
BseBI CCWGG 7 cut(s) 159, 327, 587, 724, 762, 839, 901
BseDI CCNNGG 5 cut(s) 471, 586, 722, 761, 819
BseGI GGATG 3 cut(s) 270, 310, 351
BseLI CCNNNNNNNGG 3 cut(s) 194, 761, 762
BseMII CTCAG 3 cut(s) 255, 884, 932
BseNI ACTGG 4 cut(s) 167, 394, 569, 1048
BseRI GAGGAG 1 cut(s) 1092
BseXI GCAGC 5 cut(s) 230, 360, 421, 904, 1065
BshFI GGCC 1 cut(s) 157
BslFI GGGAC 3 cut(s) 302, 705, 839
BslI CCNNNNNNNGG 3 cut(s) 194, 761, 762
BsmFI GGGAC 3 cut(s) 302, 705, 839
BsmI GAATGC 3 cut(s) 58, 110, 382
BsnI GGCC 1 cut(s) 157
Bsp119I TTCGAA 1 cut(s) 533
Bsp143I GATC 3 cut(s) 184, 307, 510
BspACI CCGC 3 cut(s) 406, 448, 827
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 3 cut(s) 256, 883, 931
BspHI TCATGA 1 cut(s) 1072
BspLI GGNNCC 2 cut(s) 544, 728
BspMAI CTGCAG 1 cut(s) 439
BspOI GCTAGC 1 cut(s) 1121
BspPI GGATC 1 cut(s) 179
BspT104I TTCGAA 1 cut(s) 533
BsrI ACTGG 4 cut(s) 167, 394, 569, 1048
BssECI CCNNGG 5 cut(s) 471, 586, 722, 761, 819
BssMI GATC 3 cut(s) 184, 307, 510
BssT1I CCWWGG 2 cut(s) 471, 819
Bst2UI CCWGG 7 cut(s) 159, 327, 587, 724, 762, 839, 901
Bst4CI ACNGT 4 cut(s) 89, 137, 305, 1148
Bst6I CTCTTC 1 cut(s) 990
BstBI TTCGAA 1 cut(s) 533
BstC8I GCNNGC 4 cut(s) 452, 906, 910, 1119
BstDEI CTNAG 6 cut(s) 205, 214, 222, 264, 870, 918
BstF5I GGATG 3 cut(s) 270, 310, 351
BstH2I RGCGCY 1 cut(s) 406
BstHHI GCGC 1 cut(s) 405
BstKTI GATC 3 cut(s) 187, 310, 513
BstMBI GATC 3 cut(s) 184, 307, 510
BstMWI GCNNNNNNNGC 2 cut(s) 114, 901
BstNI CCWGG 7 cut(s) 159, 327, 587, 724, 762, 839, 901
BstNSI RCATGY 1 cut(s) 256
BstSCI CCNGG 7 cut(s) 157, 325, 585, 722, 760, 837, 899
BstSFI CTRYAG 1 cut(s) 435
BstV1I GCAGC 5 cut(s) 230, 360, 421, 904, 1065
BstV2I GAAGAC 1 cut(s) 696
BsuRI GGCC 1 cut(s) 157
BtsCI GGATG 3 cut(s) 270, 310, 351
BtsIMutI CAGTG 2 cut(s) 142, 1011
Cac8I GCNNGC 4 cut(s) 452, 906, 910, 1119
CciI TCATGA 1 cut(s) 1072
CfoI GCGC 1 cut(s) 405
Cfr13I GGNCC 1 cut(s) 726
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CviAII CATG 4 cut(s) 253, 514, 851, 1073
DdeI CTNAG 6 cut(s) 205, 214, 222, 264, 870, 918
DpnI GATC 3 cut(s) 186, 309, 512
DpnII GATC 3 cut(s) 184, 307, 510
DraIII CACNNNGTG 1 cut(s) 1062
DrdI GACNNNNNNGTC 1 cut(s) 698
DseDI GACNNNNNNGTC 1 cut(s) 698
Eam1104I CTCTTC 1 cut(s) 990
EarI CTCTTC 1 cut(s) 990
Eco130I CCWWGG 2 cut(s) 471, 819
Eco47I GGWCC 1 cut(s) 726
Eco57I CTGAAG 1 cut(s) 615
EcoO109I RGGNCCY 1 cut(s) 726
EcoRI GAATTC 1 cut(s) 1068
EcoRII CCWGG 7 cut(s) 157, 325, 585, 722, 760, 837, 899
EcoT14I CCWWGG 2 cut(s) 471, 819
EcoT22I ATGCAT 2 cut(s) 382, 576
ErhI CCWWGG 2 cut(s) 471, 819
FaeI CATG 4 cut(s) 256, 517, 854, 1076
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FaqI GGGAC 3 cut(s) 302, 705, 839
FatI CATG 4 cut(s) 252, 513, 850, 1072
FauNDI CATATG 1 cut(s) 382
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 6 cut(s) 219, 349, 406, 435, 893, 1054
FokI GGATG 3 cut(s) 257, 297, 338
Fsp4HI GCNGC 6 cut(s) 219, 349, 406, 435, 893, 1054
FspBI CTAG 3 cut(s) 717, 833, 1118
GlaI GCGC 1 cut(s) 404
GluI GCNGC 6 cut(s) 219, 349, 406, 435, 893, 1054
GsuI CTGGAG 1 cut(s) 1089
HaeII RGCGCY 1 cut(s) 406
HaeIII GGCC 1 cut(s) 157
HhaI GCGC 1 cut(s) 405
Hin1II CATG 4 cut(s) 256, 517, 854, 1076
Hin6I GCGC 1 cut(s) 403
HinP1I GCGC 1 cut(s) 403
HincII GTYRAC 2 cut(s) 422, 703
HindII GTYRAC 2 cut(s) 422, 703
HinfI GANTC 5 cut(s) 692, 914, 995, 1006, 1097
HphI GGTGA 5 cut(s) 209, 575, 580, 626, 1051
Hpy166II GTNNAC 3 cut(s) 200, 422, 703
Hpy188I TCNGA 6 cut(s) 151, 193, 396, 661, 697, 865
Hpy188III TCNNGA 5 cut(s) 101, 314, 791, 1073, 1106
Hpy8I GTNNAC 3 cut(s) 200, 422, 703
HpyAV CCTTC 2 cut(s) 332, 605
HpyCH4III ACNGT 4 cut(s) 89, 137, 305, 1148
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 7 cut(s) 38, 332, 380, 437, 574, 960, 1129
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 901
HpyF3I CTNAG 6 cut(s) 205, 214, 222, 264, 870, 918
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 4 cut(s) 256, 517, 854, 1076
HspAI GCGC 1 cut(s) 403
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 3 cut(s) 184, 307, 510
LmnI GCTCC 2 cut(s) 590, 829
Lsp1109I GCAGC 5 cut(s) 230, 360, 421, 904, 1065
LweI GCATC 3 cut(s) 360, 561, 583
MaeI CTAG 3 cut(s) 717, 833, 1118
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 2 cut(s) 733, 1039
MalI GATC 3 cut(s) 186, 309, 512
MboI GATC 3 cut(s) 184, 307, 510
MluCI AATT 6 cut(s) 112, 297, 492, 747, 1068, 1156
MlyI GAGTC 1 cut(s) 686
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 8 cut(s) 23, 277, 390, 753, 820, 867, 871, 1113
Mph1103I ATGCAT 2 cut(s) 382, 576
MroXI GAANNNNTTC 2 cut(s) 321, 635
MseI TTAA 5 cut(s) 21, 479, 495, 1020, 1155
MspA1I CMGCKG 1 cut(s) 450
MspR9I CCNGG 7 cut(s) 159, 327, 587, 724, 762, 839, 901
Mva1269I GAATGC 3 cut(s) 58, 110, 382
MvaI CCWGG 7 cut(s) 159, 327, 587, 724, 762, 839, 901
MwoI GCNNNNNNNGC 2 cut(s) 114, 901
NdeI CATATG 1 cut(s) 382
NdeII GATC 3 cut(s) 184, 307, 510
NheI GCTAGC 1 cut(s) 1117
NlaIII CATG 4 cut(s) 256, 517, 854, 1076
NlaIV GGNNCC 2 cut(s) 544, 728
NmuCI GTSAC 1 cut(s) 1039
NsiI ATGCAT 2 cut(s) 382, 576
NspI RCATGY 1 cut(s) 256
NspV TTCGAA 1 cut(s) 533
PagI TCATGA 1 cut(s) 1072
PciI ACATGT 1 cut(s) 252
PctI GAATGC 3 cut(s) 58, 110, 382
PdmI GAANNNNTTC 2 cut(s) 321, 635
PfeI GAWTC 4 cut(s) 914, 995, 1006, 1097
PflMI CCANNNNNTGG 1 cut(s) 194
PfoI TCCNGGA 1 cut(s) 837
PkrI GCNGC 6 cut(s) 220, 350, 407, 436, 894, 1055
PleI GAGTC 1 cut(s) 686
PpsI GAGTC 1 cut(s) 686
PpuMI RGGWCCY 1 cut(s) 726
PscI ACATGT 1 cut(s) 252
Psp5II RGGWCCY 1 cut(s) 726
Psp6I CCWGG 7 cut(s) 157, 325, 585, 722, 760, 837, 899
PspGI CCWGG 7 cut(s) 157, 325, 585, 722, 760, 837, 899
PspN4I GGNNCC 2 cut(s) 544, 728
PspPI GGNCC 1 cut(s) 726
PspPPI RGGWCCY 1 cut(s) 726
PstI CTGCAG 1 cut(s) 439
SaqAI TTAA 5 cut(s) 21, 479, 495, 1020, 1155
SatI GCNGC 6 cut(s) 219, 349, 406, 435, 893, 1054
Sau3AI GATC 3 cut(s) 184, 307, 510
Sau96I GGNCC 1 cut(s) 726
SchI GAGTC 1 cut(s) 686
ScrFI CCNGG 7 cut(s) 159, 327, 587, 724, 762, 839, 901
SfaNI GCATC 3 cut(s) 360, 561, 583
SfcI CTRYAG 1 cut(s) 435
SfuI TTCGAA 1 cut(s) 533
SinI GGWCC 1 cut(s) 726
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
SpeI ACTAGT 1 cut(s) 716
Sse9I AATT 6 cut(s) 112, 297, 492, 747, 1068, 1156
SsiI CCGC 3 cut(s) 406, 448, 827
SspMI CTAG 3 cut(s) 717, 833, 1118
StyD4I CCNGG 7 cut(s) 157, 325, 585, 722, 760, 837, 899
StyI CCWWGG 2 cut(s) 471, 819
TaaI ACNGT 4 cut(s) 89, 137, 305, 1148
TaiI ACGT 1 cut(s) 427
TaqI TCGA 3 cut(s) 533, 629, 1164
TasI AATT 6 cut(s) 112, 297, 492, 747, 1068, 1156
TauI GCSGC 1 cut(s) 408
TfiI GAWTC 4 cut(s) 914, 995, 1006, 1097
Tru1I TTAA 5 cut(s) 21, 479, 495, 1020, 1155
Tru9I TTAA 5 cut(s) 21, 479, 495, 1020, 1155
TscAI CASTG 2 cut(s) 142, 1018
TseFI GTSAC 1 cut(s) 1039
TseI GCWGC 5 cut(s) 218, 348, 434, 892, 1053
Tsp45I GTSAC 1 cut(s) 1039
TspDTI ATGAA 5 cut(s) 259, 389, 575, 810, 1061
TspRI CASTG 2 cut(s) 142, 1018
Van91I CCANNNNNTGG 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 726
XapI RAATTY 2 cut(s) 297, 1068
XceI RCATGY 1 cut(s) 256
XmnI GAANNNNTTC 2 cut(s) 321, 635
XspI CTAG 3 cut(s) 717, 833, 1118
Zsp2I ATGCAT 2 cut(s) 382, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.