pycom17g01980
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0006146
Physical Location & Seq
Reverse (-)
1250527 .. 1252218
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g01980.1

Sequence Viewer

Length: 1164 bp
ATGCAATTATTTATATGTTCTCCAAAAGAAAAAAACTCAACTTTCTGCAAACATGTTTTATCGGAATGGCCTGGCTTACCGGTTGGTGTGAAGTTTGATCCATCTGATGGTGAACTCTTAGTACACTTAGCGGCTAAGTGTGGTGTCGGAAACTCACAGCCACACTTGCTTATCGATGAGTTCATCCCTACACTTGAGGGGGATAATGGAATTTGTTATGATCATCCCAAAAACCTTCCTGGTGCAACGAAAGATGGAAGCAGCATCCACTTCTTCCATAAAACAATGAATGCATATGCTACTGGTCAGAGGAAGCGCCGCAAGGTTGATAGTCAGCGTAGCGTGGCTTCAGAGGATGTCCGCTGGCACAAAACGGGTAAGACCAAGGCTATATTAGAAAATGGAGTTAAGGGCTGGAAGAAGATCATGGTCCTTTACAAAAGTTCGAAGAAAGGTACCAAGCCAGAAAAGGTTAACTGGGTGATGCATCAGTATCACCTGGGAGCTGAAGAGGATGAGAGAGAAGGCGACTATGTGGTGTCAAAGATATTCTACCAGCAGCATAAGCAGTCAGAAAGGAACGACAACAATGTGGTCGCTGAAGATTCTGACGTCAATGCACTTCGAACTAGCCCCAGGACCCCCGTATCCAGTCCTCCAATTCCACCCAGACCAGGGAAATCTGTTTGGTTTGAGGATGTTCCTGATGAAGCTATGCTCCGCTCATCTGTCAAGGAACCGGAGCTTGCCCAGGAAGCATATCATGTCCCTCAACCTGATACTCGGTTTGAAGACAATATTGGGGAGCCTACCTGGCTGGCAGGCGAATCTCAGGCTGACGATTTGCATAGCTTGGAAGAAACTTTGTTATGCAAGGAGATCTTTGGTCCAGCACCGAATCTCATATCTAACACTGACTTCAATAACAATACATACGAGGTGAATGGAAACAGCAGCACGTCGTGTGGACTTCGTGACCTTGAGAATATTGGACTTGATTCTCCTCCAGATTTCCAGCTACCTGTAAGCTTCCTGCTTACCCCTTCTTCTTCTGCTTTGTTAGATTTTTCAAGAAATATTGTACTAAAATTCACATTCATAATGCAGGATTTGCAGTTTTCTTCCCAAGACAGTTTACTTAATTGGCTAGACAGGTTTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

388

Amino Acids

43.5

Weight (kDa)

5.51

Isoelectric Point (pI)

54.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 27 - 167 3.1e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 615
Acc65I GGTACC 1 cut(s) 455
AccB1I GGYRCC 1 cut(s) 455
AccB7I CCANNNNNTGG 1 cut(s) 107
AccBSI CCGCTC 1 cut(s) 723
AciI CCGC 4 cut(s) 131, 319, 361, 721
AclWI GGATC 1 cut(s) 92
AcsI RAATTY 2 cut(s) 210, 1088
AcuI CTGAAG 3 cut(s) 333, 528, 621
AcyI GRCGYC 1 cut(s) 612
AdeI CACNNNGTG 1 cut(s) 963
AfaI GTAC 3 cut(s) 123, 457, 1083
AfiI CCNNNNNNNGG 3 cut(s) 107, 674, 675
AflIII ACRYGT 1 cut(s) 52
AgeI ACCGGT 1 cut(s) 79
AgsI TTSAA 3 cut(s) 791, 922, 1071
AjiI CACGTC 1 cut(s) 960
AjnI CCWGG 7 cut(s) 70, 238, 498, 635, 673, 750, 812
AjuI GAANNNNNNNTTGG 2 cut(s) 783, 815
AluBI AGCT 6 cut(s) 506, 713, 745, 852, 1018, 1029
AluI AGCT 6 cut(s) 506, 713, 745, 852, 1018, 1029
AlwI GGATC 1 cut(s) 92
AoxI GGCC 1 cut(s) 68
ApeKI GCWGC 3 cut(s) 261, 559, 954
ApoI RAATTY 2 cut(s) 210, 1088
AsiGI ACCGGT 1 cut(s) 79
Asp718I GGTACC 1 cut(s) 455
AspLEI GCGC 1 cut(s) 318
AspS9I GGNCC 3 cut(s) 430, 639, 887
AsuHPI GGTGA 4 cut(s) 122, 488, 493, 952
AsuII TTCGAA 2 cut(s) 446, 625
AvaII GGWCC 3 cut(s) 430, 639, 887
BaeI ACNNNNGTAYC 2 cut(s) 630, 663
BanI GGYRCC 1 cut(s) 455
BarI GAAGNNNNNNTAC 2 cut(s) 331, 363
BbsI GAAGAC 1 cut(s) 798
BbvI GCAGC 3 cut(s) 273, 571, 966
BccI CCATC 3 cut(s) 101, 109, 248
BciT130I CCWGG 7 cut(s) 72, 240, 500, 637, 675, 752, 814
BciVI GTATCC 1 cut(s) 658
BclI TGATCA 1 cut(s) 220
BfaI CTAG 2 cut(s) 630, 1148
BfoI RGCGCY 1 cut(s) 319
BfuI GTATCC 1 cut(s) 658
BglI GCCNNNNNGGC 1 cut(s) 814
BglII AGATCT 1 cut(s) 879
BisI GCNGC 5 cut(s) 132, 262, 319, 560, 955
BlsI GCNGC 5 cut(s) 133, 263, 320, 561, 956
Bme1390I CCNGG 7 cut(s) 72, 240, 500, 637, 675, 752, 814
Bme18I GGWCC 3 cut(s) 430, 639, 887
BmgBI CACGTC 1 cut(s) 960
BmgT120I GGNCC 3 cut(s) 430, 639, 887
BmiI GGNNCC 4 cut(s) 457, 641, 738, 807
BmrFI CCNGG 7 cut(s) 72, 240, 500, 637, 675, 752, 814
BmrI ACTGGG 1 cut(s) 487
BmsI GCATC 3 cut(s) 273, 474, 496
BmuI ACTGGG 1 cut(s) 487
BpiI GAAGAC 1 cut(s) 798
BpmI CTGGAG 1 cut(s) 990
Bpu14I TTCGAA 2 cut(s) 446, 625
BpuEI CTTGAG 2 cut(s) 215, 1001
Bsa29I ATCGAT 1 cut(s) 174
BsaHI GRCGYC 1 cut(s) 612
BsaJI CCNNGG 5 cut(s) 384, 499, 635, 674, 750
BsaWI WCCGGW 2 cut(s) 79, 739
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 674, 675
Bse118I RCCGGY 1 cut(s) 79
Bse1I ACTGG 3 cut(s) 307, 482, 651
BseBI CCWGG 7 cut(s) 72, 240, 500, 637, 675, 752, 814
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 5 cut(s) 384, 499, 635, 674, 750
BseGI GGATG 6 cut(s) 183, 223, 264, 361, 520, 703
BseLI CCNNNNNNNGG 3 cut(s) 107, 674, 675
BseMII CTCAG 1 cut(s) 845
BseNI ACTGG 3 cut(s) 307, 482, 651
BseRI GAGGAG 1 cut(s) 993
BseXI GCAGC 3 cut(s) 273, 571, 966
BshFI GGCC 1 cut(s) 70
BshNI GGYRCC 1 cut(s) 455
BshTI ACCGGT 1 cut(s) 79
BshVI ATCGAT 1 cut(s) 174
BsiSI CCGG 2 cut(s) 80, 740
BslFI GGGAC 1 cut(s) 752
BslI CCNNNNNNNGG 3 cut(s) 107, 674, 675
BsmFI GGGAC 1 cut(s) 752
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 1 cut(s) 70
Bsp119I TTCGAA 2 cut(s) 446, 625
Bsp143I GATC 4 cut(s) 97, 220, 423, 879
BspACI CCGC 4 cut(s) 131, 319, 361, 721
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 1 cut(s) 844
BspDI ATCGAT 1 cut(s) 174
BspLI GGNNCC 4 cut(s) 457, 641, 738, 807
BspPI GGATC 1 cut(s) 92
BspT104I TTCGAA 2 cut(s) 446, 625
BspT107I GGYRCC 1 cut(s) 455
BsrBI CCGCTC 1 cut(s) 723
BsrFI RCCGGY 1 cut(s) 79
BsrI ACTGG 3 cut(s) 307, 482, 651
BssAI RCCGGY 1 cut(s) 79
BssECI CCNNGG 5 cut(s) 384, 499, 635, 674, 750
BssMI GATC 4 cut(s) 97, 220, 423, 879
BssNI GRCGYC 1 cut(s) 612
BssT1I CCWWGG 1 cut(s) 384
Bst2UI CCWGG 7 cut(s) 72, 240, 500, 637, 675, 752, 814
Bst4CI ACNGT 1 cut(s) 1133
Bst6I CTCTTC 1 cut(s) 504
BstACI GRCGYC 1 cut(s) 612
BstAPI GCANNNNNTGC 1 cut(s) 1111
BstBI TTCGAA 2 cut(s) 446, 625
BstC8I GCNNGC 4 cut(s) 365, 747, 819, 823
BstDEI CTNAG 4 cut(s) 118, 127, 135, 831
BstF5I GGATG 6 cut(s) 183, 223, 264, 361, 520, 703
BstH2I RGCGCY 1 cut(s) 319
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 4 cut(s) 100, 223, 426, 882
BstMBI GATC 4 cut(s) 97, 220, 423, 879
BstMWI GCNNNNNNNGC 5 cut(s) 166, 565, 755, 814, 1111
BstNI CCWGG 7 cut(s) 72, 240, 500, 637, 675, 752, 814
BstNSI RCATGY 1 cut(s) 56
BstSCI CCNGG 7 cut(s) 70, 238, 498, 635, 673, 750, 812
BstV1I GCAGC 3 cut(s) 273, 571, 966
BstV2I GAAGAC 1 cut(s) 798
BstX2I RGATCY 1 cut(s) 879
BstYI RGATCY 1 cut(s) 879
Bsu15I ATCGAT 1 cut(s) 174
BsuI GTATCC 1 cut(s) 658
BsuRI GGCC 1 cut(s) 70
BsuTUI ATCGAT 1 cut(s) 174
BtrI CACGTC 1 cut(s) 960
BtsCI GGATG 6 cut(s) 183, 223, 264, 361, 520, 703
BtsIMutI CAGTG 1 cut(s) 912
Cac8I GCNNGC 4 cut(s) 365, 747, 819, 823
CfoI GCGC 1 cut(s) 318
Cfr10I RCCGGY 1 cut(s) 79
Cfr13I GGNCC 3 cut(s) 430, 639, 887
ClaI ATCGAT 1 cut(s) 174
Csp6I GTAC 3 cut(s) 122, 456, 1082
CspAI ACCGGT 1 cut(s) 79
CviAII CATG 3 cut(s) 53, 427, 764
CviQI GTAC 3 cut(s) 122, 456, 1082
DdeI CTNAG 4 cut(s) 118, 127, 135, 831
DpnI GATC 4 cut(s) 99, 222, 425, 881
DpnII GATC 4 cut(s) 97, 220, 423, 879
DraIII CACNNNGTG 1 cut(s) 963
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
Eco130I CCWWGG 1 cut(s) 384
Eco47I GGWCC 3 cut(s) 430, 639, 887
Eco57I CTGAAG 3 cut(s) 333, 528, 621
EcoO109I RGGNCCY 1 cut(s) 639
EcoRII CCWGG 7 cut(s) 70, 238, 498, 635, 673, 750, 812
EcoT14I CCWWGG 1 cut(s) 384
EcoT22I ATGCAT 2 cut(s) 295, 489
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 3 cut(s) 56, 430, 767
FalI AAGNNNNNCTT 2 cut(s) 866, 898
FaqI GGGAC 1 cut(s) 752
FatI CATG 3 cut(s) 52, 426, 763
FauNDI CATATG 1 cut(s) 295
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 5 cut(s) 132, 262, 319, 560, 955
FokI GGATG 6 cut(s) 170, 210, 251, 368, 527, 710
Fsp4HI GCNGC 5 cut(s) 132, 262, 319, 560, 955
FspBI CTAG 2 cut(s) 630, 1148
GlaI GCGC 1 cut(s) 317
GluI GCNGC 5 cut(s) 132, 262, 319, 560, 955
GsuI CTGGAG 1 cut(s) 990
HaeII RGCGCY 1 cut(s) 319
HaeIII GGCC 1 cut(s) 70
HapII CCGG 2 cut(s) 80, 740
HhaI GCGC 1 cut(s) 318
Hin1I GRCGYC 1 cut(s) 612
Hin1II CATG 3 cut(s) 56, 430, 767
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HindIII AAGCTT 1 cut(s) 1027
HinfI GANTC 4 cut(s) 605, 827, 898, 998
HpaI GTTAAC 1 cut(s) 475
HpaII CCGG 2 cut(s) 80, 740
HphI GGTGA 4 cut(s) 122, 488, 493, 952
Hpy166II GTNNAC 5 cut(s) 113, 124, 475, 968, 1136
Hpy188I TCNGA 7 cut(s) 64, 106, 149, 309, 352, 574, 610
Hpy188III TCNNGA 4 cut(s) 704, 974, 1007, 1071
Hpy8I GTNNAC 5 cut(s) 113, 124, 475, 968, 1136
Hpy99I CGWCG 1 cut(s) 964
HpyAV CCTTC 3 cut(s) 245, 518, 1053
HpyCH4III ACNGT 1 cut(s) 1133
HpyCH4IV ACGT 2 cut(s) 612, 959
HpyF10VI GCNNNNNNNGC 5 cut(s) 166, 565, 755, 814, 1111
HpyF3I CTNAG 4 cut(s) 118, 127, 135, 831
HpySE526I ACGT 2 cut(s) 612, 959
Hsp92I GRCGYC 1 cut(s) 612
Hsp92II CATG 3 cut(s) 56, 430, 767
HspAI GCGC 1 cut(s) 316
KpnI GGTACC 1 cut(s) 459
Ksp22I TGATCA 1 cut(s) 220
KspAI GTTAAC 1 cut(s) 475
Kzo9I GATC 4 cut(s) 97, 220, 423, 879
LmnI GCTCC 4 cut(s) 503, 723, 742, 805
Lsp1109I GCAGC 3 cut(s) 273, 571, 966
LweI GCATC 3 cut(s) 273, 474, 496
MaeI CTAG 2 cut(s) 630, 1148
MaeII ACGT 2 cut(s) 612, 959
MaeIII GTNAC 1 cut(s) 974
MalI GATC 4 cut(s) 99, 222, 425, 881
MbiI CCGCTC 1 cut(s) 723
MboI GATC 4 cut(s) 97, 220, 423, 879
MflI RGATCY 1 cut(s) 879
MluCI AATT 5 cut(s) 5, 210, 660, 1088, 1141
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 9 cut(s) 190, 303, 346, 505, 666, 688, 780, 931, 1014
Mph1103I ATGCAT 2 cut(s) 295, 489
MseI TTAA 4 cut(s) 408, 474, 1140, 1158
MspA1I CMGCKG 1 cut(s) 363
MspI CCGG 2 cut(s) 80, 740
MspR9I CCNGG 7 cut(s) 72, 240, 500, 637, 675, 752, 814
Mva1269I GAATGC 1 cut(s) 295
MvaI CCWGG 7 cut(s) 72, 240, 500, 637, 675, 752, 814
MwoI GCNNNNNNNGC 5 cut(s) 166, 565, 755, 814, 1111
NdeI CATATG 1 cut(s) 295
NdeII GATC 4 cut(s) 97, 220, 423, 879
NlaIII CATG 3 cut(s) 56, 430, 767
NlaIV GGNNCC 4 cut(s) 457, 641, 738, 807
NmuCI GTSAC 1 cut(s) 974
NsiI ATGCAT 2 cut(s) 295, 489
NspI RCATGY 1 cut(s) 56
NspV TTCGAA 2 cut(s) 446, 625
PciI ACATGT 1 cut(s) 52
PctI GAATGC 1 cut(s) 295
PfeI GAWTC 4 cut(s) 605, 827, 898, 998
PflMI CCANNNNNTGG 1 cut(s) 107
PinAI ACCGGT 1 cut(s) 79
PkrI GCNGC 5 cut(s) 133, 263, 320, 561, 956
PpuMI RGGWCCY 1 cut(s) 639
PscI ACATGT 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 639
Psp6I CCWGG 7 cut(s) 70, 238, 498, 635, 673, 750, 812
PspGI CCWGG 7 cut(s) 70, 238, 498, 635, 673, 750, 812
PspN4I GGNNCC 4 cut(s) 457, 641, 738, 807
PspPI GGNCC 3 cut(s) 430, 639, 887
PspPPI RGGWCCY 1 cut(s) 639
PsrI GAACNNNNNNTAC 2 cut(s) 105, 137
PsuI RGATCY 1 cut(s) 879
RsaI GTAC 3 cut(s) 123, 457, 1083
RsaNI GTAC 3 cut(s) 122, 456, 1082
SaqAI TTAA 4 cut(s) 408, 474, 1140, 1158
SatI GCNGC 5 cut(s) 132, 262, 319, 560, 955
Sau3AI GATC 4 cut(s) 97, 220, 423, 879
Sau96I GGNCC 3 cut(s) 430, 639, 887
ScrFI CCNGG 7 cut(s) 72, 240, 500, 637, 675, 752, 814
SfaNI GCATC 3 cut(s) 273, 474, 496
SfuI TTCGAA 2 cut(s) 446, 625
SinI GGWCC 3 cut(s) 430, 639, 887
SmlI CTYRAG 2 cut(s) 194, 980
SmoI CTYRAG 2 cut(s) 194, 980
Sse9I AATT 5 cut(s) 5, 210, 660, 1088, 1141
SsiI CCGC 4 cut(s) 131, 319, 361, 721
SspI AATATT 3 cut(s) 799, 988, 1078
SspMI CTAG 2 cut(s) 630, 1148
StyD4I CCNGG 7 cut(s) 70, 238, 498, 635, 673, 750, 812
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 1 cut(s) 1133
TaiI ACGT 2 cut(s) 615, 962
TaqI TCGA 3 cut(s) 174, 446, 625
TasI AATT 5 cut(s) 5, 210, 660, 1088, 1141
TatI WGTACW 2 cut(s) 121, 1081
TauI GCSGC 2 cut(s) 134, 321
TfiI GAWTC 4 cut(s) 605, 827, 898, 998
Tru1I TTAA 4 cut(s) 408, 474, 1140, 1158
Tru9I TTAA 4 cut(s) 408, 474, 1140, 1158
TscAI CASTG 1 cut(s) 919
TseFI GTSAC 1 cut(s) 974
TseI GCWGC 3 cut(s) 261, 559, 954
Tsp45I GTSAC 1 cut(s) 974
TspDTI ATGAA 4 cut(s) 172, 302, 723, 1087
TspRI CASTG 1 cut(s) 919
Van91I CCANNNNNTGG 1 cut(s) 107
VpaK11BI GGWCC 3 cut(s) 430, 639, 887
XapI RAATTY 2 cut(s) 210, 1088
XceI RCATGY 1 cut(s) 56
XspI CTAG 2 cut(s) 630, 1148
ZraI GACGTC 1 cut(s) 613
Zsp2I ATGCAT 2 cut(s) 295, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.