Rh2CG622200
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006146
Physical Location & Seq
Forward (+)
79642785 .. 79645732
2948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG622200.1

Sequence Viewer

Length: 1221 bp
ATGGCGAGGGCTTGGCTGATCAACAGCAGAGGATTTGCAAACAAAGTCAAAAACTGTGCTTCTCAAATCAAAGACTGTGGAGCGAGTCGCGAGTGTCCAAAATGCCATTATCTTATCAGCAACAGCGATGTTTCAACAGAATGGCCTGGCTTTCCGACTGGTGTGAAGTTTGATCCATCTGATACTGATCTCATAGAACATTTAGCTGCGAAAGTTGGTGTTGGAAACTCAAAACCACACATGTTTATTGATGAGTTCATCCCAACTATTGATTGGGATATCGGCATTTGCTACACTCATCCTGAAAACCTTCCTGGTGCAAAGAAAGATGGAAGTAGCTTCCATTTCTTTCATAAAACATGTAATGCATATTCTACTGGTCGGCGGAAGCGTCGCAAGATTGACAAAGAGCATGACTTGGCCGCACAGGCTGTTCGTTGGCACAAGACCGGGAAGACCAAGGCTATAAGAAGTGGAGTTCATCCGGGCTGGAAGAAGATCATGGTGCTGTATAAAAGTTCAATCAAAGGGTCCAAAGCAGATAAGACTGACTGGGTGATGCATCAGTATCATTTGGGAAGTACAGAAGATGAGAAAGAAGGTGAATATGTGGTGTCGAAGATATTCTATCAACAGCCAAAGCAGGCTGACAAGAATGATCACAATTTGGTCATTGAAGAATCTGAATCCTATGTGCTTCAACGTTCTCCAATTACCCCCATAACAAATCCTCCGACTACTCCTGCACCAGAGGAATCTGCTTGGTGTGATGCTGGTCCTGACGAATATATGCAGAATTCCTATGCCAAGGTAGCAGAACATGTCCCGGAAGTATCTCAATATGCCCAACTTAGGAAGTTCGAGGACAGTATGTCTCATGTCCCTCAACTTGATACTCAGTTTGAGAACAATGTGGGGCAACCTACCTGGTTGGCAGGCGAATCTCAGGTTGATGAATACTGCGGGTTAAATTGCTTCGATGACACCTTGTTATGCAAGGAGACATTTAATTCTTCCACTCCTCTAAATGGTCCAGTTCTGAATCCCATATCTAACAGTGACTGTGTTAACAACACGTACGGGGTGACTGGAAACAGCAGCACAGCATTTGGAATCCCTGACCTTGAGAACCTCGAGTTTGATAGTCCACCAGATTTCCAGCTAACTGGTTTGCAGTTTTGTTCCCAAGACAGTATACTTGAGTGGTTGGACAGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

406

Amino Acids

45.57

Weight (kDa)

5.47

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 52 - 192 1.6e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1195
AccII CGCG 1 cut(s) 90
AciI CCGC 3 cut(s) 385, 423, 963
AclI AACGTT 1 cut(s) 703
AclWI GGATC 1 cut(s) 167
AcoI YGGCCR 1 cut(s) 420
AcsI RAATTY 1 cut(s) 796
AfaI GTAC 2 cut(s) 583, 1079
AfiI CCNNNNNNNGG 2 cut(s) 852, 1028
AflIII ACRYGT 4 cut(s) 240, 359, 820, 1074
AgsI TTSAA 4 cut(s) 135, 522, 677, 701
AhdI GACNNNNNGTC 1 cut(s) 871
AjnI CCWGG 3 cut(s) 145, 313, 926
AluBI AGCT 3 cut(s) 206, 339, 1162
AluI AGCT 3 cut(s) 206, 339, 1162
Alw26I GTCTC 2 cut(s) 879, 995
AlwI GGATC 1 cut(s) 167
AlwNI CAGNNNCTG 1 cut(s) 1062
Ama87I CYCGRG 1 cut(s) 1133
AoxI GGCC 2 cut(s) 143, 420
ApeKI GCWGC 2 cut(s) 206, 1098
ApoI RAATTY 1 cut(s) 796
Asp700I GAANNNNTTC 2 cut(s) 309, 623
AspS9I GGNCC 3 cut(s) 531, 776, 1031
AsuC2I CCSGG 3 cut(s) 451, 486, 827
AsuHPI GGTGA 3 cut(s) 568, 614, 1096
AvaI CYCGRG 1 cut(s) 1133
AvaII GGWCC 3 cut(s) 531, 776, 1031
BbsI GAAGAC 1 cut(s) 461
BbvI GCAGC 2 cut(s) 193, 1110
BccI CCATC 2 cut(s) 184, 323
BciT130I CCWGG 3 cut(s) 147, 315, 928
BclI TGATCA 2 cut(s) 18, 658
BcnI CCSGG 3 cut(s) 451, 486, 827
BcoDI GTCTC 2 cut(s) 879, 995
BglI GCCNNNNNGGC 1 cut(s) 428
BisI GCNGC 3 cut(s) 207, 423, 1099
BlsI GCNGC 3 cut(s) 208, 424, 1100
Bme1390I CCNGG 6 cut(s) 147, 315, 451, 486, 827, 928
Bme18I GGWCC 3 cut(s) 531, 776, 1031
BmeRI GACNNNNNGTC 1 cut(s) 871
BmeT110I CYCGRG 1 cut(s) 1133
BmgT120I GGNCC 3 cut(s) 531, 776, 1031
BmiI GGNNCC 1 cut(s) 532
BmrFI CCNGG 6 cut(s) 147, 315, 451, 486, 827, 928
BmrI ACTGGG 1 cut(s) 562
BmsI GCATC 3 cut(s) 549, 571, 760
BmuI ACTGGG 1 cut(s) 562
BpiI GAAGAC 1 cut(s) 461
BpuEI CTTGAG 2 cut(s) 1145, 1220
BpuMI CCSGG 3 cut(s) 451, 486, 827
BsaAI YACGTR 1 cut(s) 1077
BsaBI GATNNNNATC 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 459, 807
BsaXI ACNNNNNCTCC 2 cut(s) 715, 745
Bsc4I CCNNNNNNNGG 2 cut(s) 852, 1028
Bse1I ACTGG 6 cut(s) 163, 382, 557, 1034, 1093, 1171
Bse8I GATNNNNATC 1 cut(s) 186
BseBI CCWGG 3 cut(s) 147, 315, 928
BseDI CCNNGG 2 cut(s) 459, 807
BseGI GGATG 3 cut(s) 258, 298, 481
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 2 cut(s) 852, 1028
BseMII CTCAG 2 cut(s) 911, 959
BseNI ACTGG 6 cut(s) 163, 382, 557, 1034, 1093, 1171
BseRI GAGGAG 1 cut(s) 1011
BseXI GCAGC 2 cut(s) 193, 1110
BsgI GTGCAG 1 cut(s) 729
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 2 cut(s) 145, 422
BsiHKCI CYCGRG 1 cut(s) 1133
BsiSI CCGG 3 cut(s) 450, 485, 827
BsiWI CGTACG 1 cut(s) 1077
BslFI GGGAC 2 cut(s) 809, 866
BslI CCNNNNNNNGG 2 cut(s) 852, 1028
BsmAI GTCTC 2 cut(s) 879, 995
BsmFI GGGAC 2 cut(s) 809, 866
BsnI GGCC 2 cut(s) 145, 422
BsoBI CYCGRG 1 cut(s) 1133
Bsp143I GATC 5 cut(s) 18, 172, 187, 498, 658
Bsp68I TCGCGA 1 cut(s) 90
BspACI CCGC 3 cut(s) 385, 423, 963
BspANI GGCC 2 cut(s) 145, 422
BspCNI CTCAG 2 cut(s) 910, 958
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 532
BspPI GGATC 1 cut(s) 167
BsrI ACTGG 6 cut(s) 163, 382, 557, 1034, 1093, 1171
BssECI CCNNGG 2 cut(s) 459, 807
BssMI GATC 5 cut(s) 18, 172, 187, 498, 658
BssNAI GTATAC 1 cut(s) 1196
BssT1I CCWWGG 2 cut(s) 459, 807
Bst1107I GTATAC 1 cut(s) 1196
Bst2UI CCWGG 3 cut(s) 147, 315, 928
Bst4CI ACNGT 6 cut(s) 56, 77, 869, 1058, 1064, 1193
BstBAI YACGTR 1 cut(s) 1077
BstC8I GCNNGC 2 cut(s) 645, 937
BstDEI CTNAG 3 cut(s) 851, 897, 945
BstF5I GGATG 3 cut(s) 258, 298, 481
BstFNI CGCG 1 cut(s) 90
BstKTI GATC 5 cut(s) 21, 175, 190, 501, 661
BstMAI GTCTC 2 cut(s) 879, 995
BstMBI GATC 5 cut(s) 18, 172, 187, 498, 658
BstMWI GCNNNNNNNGC 2 cut(s) 428, 812
BstNI CCWGG 3 cut(s) 147, 315, 928
BstNSI RCATGY 3 cut(s) 244, 363, 824
BstSCI CCNGG 6 cut(s) 145, 313, 449, 484, 825, 926
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 193, 1110
BstV2I GAAGAC 1 cut(s) 461
BstXI CCANNNNNNTGG 1 cut(s) 1166
BstZ17I GTATAC 1 cut(s) 1196
BsuRI GGCC 2 cut(s) 145, 422
BtgZI GCGATG 1 cut(s) 141
BtsCI GGATG 3 cut(s) 258, 298, 481
BtsIMutI CAGTG 1 cut(s) 1063
BtuMI TCGCGA 1 cut(s) 90
Cac8I GCNNGC 2 cut(s) 645, 937
CaiI CAGNNNCTG 1 cut(s) 1062
Cfr13I GGNCC 3 cut(s) 531, 776, 1031
CseI GACGC 1 cut(s) 380
CsiI ACCWGGT 1 cut(s) 926
Csp6I GTAC 2 cut(s) 582, 1078
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 6 cut(s) 241, 360, 413, 502, 821, 878
CviQI GTAC 2 cut(s) 582, 1078
DdeI CTNAG 3 cut(s) 851, 897, 945
DpnI GATC 5 cut(s) 20, 174, 189, 500, 660
DpnII GATC 5 cut(s) 18, 172, 187, 498, 658
DriI GACNNNNNGTC 1 cut(s) 871
EaeI YGGCCR 1 cut(s) 420
Eam1105I GACNNNNNGTC 1 cut(s) 871
EciI GGCGGA 1 cut(s) 400
Eco130I CCWWGG 2 cut(s) 459, 807
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 3 cut(s) 531, 776, 1031
Eco88I CYCGRG 1 cut(s) 1133
EcoRI GAATTC 1 cut(s) 796
EcoRII CCWGG 3 cut(s) 145, 313, 926
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 2 cut(s) 459, 807
EcoT22I ATGCAT 2 cut(s) 370, 564
ErhI CCWWGG 2 cut(s) 459, 807
FaeI CATG 6 cut(s) 244, 363, 416, 505, 824, 881
FaqI GGGAC 2 cut(s) 809, 866
FatI CATG 6 cut(s) 240, 359, 412, 501, 820, 877
FauI CCCGC 1 cut(s) 956
FbaI TGATCA 2 cut(s) 18, 658
FblI GTMKAC 1 cut(s) 1195
Fnu4HI GCNGC 3 cut(s) 207, 423, 1099
FokI GGATG 3 cut(s) 245, 285, 468
Fsp4HI GCNGC 3 cut(s) 207, 423, 1099
GluI GCNGC 3 cut(s) 207, 423, 1099
HaeIII GGCC 2 cut(s) 145, 422
HapII CCGG 3 cut(s) 450, 485, 827
HgaI GACGC 1 cut(s) 380
Hin1II CATG 6 cut(s) 244, 363, 416, 505, 824, 881
HincII GTYRAC 1 cut(s) 1069
HindII GTYRAC 1 cut(s) 1069
HinfI GANTC 7 cut(s) 85, 680, 686, 755, 941, 1042, 1113
HpaI GTTAAC 1 cut(s) 1069
HpaII CCGG 3 cut(s) 450, 485, 827
HphI GGTGA 3 cut(s) 568, 614, 1096
Hpy166II GTNNAC 3 cut(s) 1069, 1148, 1196
Hpy188I TCNGA 5 cut(s) 156, 181, 685, 735, 1041
Hpy188III TCNNGA 3 cut(s) 89, 302, 779
Hpy8I GTNNAC 3 cut(s) 1069, 1148, 1196
Hpy99I CGWCG 1 cut(s) 396
HpyAV CCTTC 2 cut(s) 320, 593
HpyCH4III ACNGT 6 cut(s) 56, 77, 869, 1058, 1064, 1193
HpyCH4IV ACGT 2 cut(s) 703, 1076
HpyCH4V TGCA 8 cut(s) 38, 320, 368, 562, 746, 793, 996, 1174
HpyF10VI GCNNNNNNNGC 2 cut(s) 428, 812
HpyF3I CTNAG 3 cut(s) 851, 897, 945
HpySE526I ACGT 2 cut(s) 703, 1076
Hsp92II CATG 6 cut(s) 244, 363, 416, 505, 824, 881
Ksp22I TGATCA 2 cut(s) 18, 658
KspAI GTTAAC 1 cut(s) 1069
Kzo9I GATC 5 cut(s) 18, 172, 187, 498, 658
LmnI GCTCC 1 cut(s) 80
Lsp1109I GCAGC 2 cut(s) 193, 1110
LweI GCATC 3 cut(s) 549, 571, 760
MabI ACCWGGT 1 cut(s) 926
MaeII ACGT 2 cut(s) 703, 1076
MaeIII GTNAC 2 cut(s) 1058, 1084
MalI GATC 5 cut(s) 20, 174, 189, 500, 660
MboI GATC 5 cut(s) 18, 172, 187, 498, 658
MboII GAAGA 7 cut(s) 466, 505, 508, 599, 631, 689, 1005
MluCI AATT 5 cut(s) 664, 711, 796, 970, 1009
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 4 cut(s) 179, 202, 758, 1188
MnlI CCTC 7 cut(s) 23, 741, 745, 856, 894, 1032, 1142
Mph1103I ATGCAT 2 cut(s) 370, 564
MroXI GAANNNNTTC 2 cut(s) 309, 623
MseI TTAA 3 cut(s) 968, 1008, 1068
MspI CCGG 3 cut(s) 450, 485, 827
MspR9I CCNGG 6 cut(s) 147, 315, 451, 486, 827, 928
MvaI CCWGG 3 cut(s) 147, 315, 928
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 428, 812
NciI CCSGG 3 cut(s) 451, 486, 827
NdeII GATC 5 cut(s) 18, 172, 187, 498, 658
NlaIII CATG 6 cut(s) 244, 363, 416, 505, 824, 881
NlaIV GGNNCC 1 cut(s) 532
NmuCI GTSAC 2 cut(s) 1058, 1084
NruI TCGCGA 1 cut(s) 90
NsiI ATGCAT 2 cut(s) 370, 564
NspI RCATGY 3 cut(s) 244, 363, 824
PaeR7I CTCGAG 1 cut(s) 1133
PciI ACATGT 3 cut(s) 240, 359, 820
PcsI WCGNNNNNNNCGW 1 cut(s) 388
PdmI GAANNNNTTC 2 cut(s) 309, 623
PfeI GAWTC 6 cut(s) 680, 686, 755, 941, 1042, 1113
Pfl23II CGTACG 1 cut(s) 1077
PfoI TCCNGGA 1 cut(s) 825
PkrI GCNGC 3 cut(s) 208, 424, 1100
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
Ppu21I YACGTR 1 cut(s) 1077
PscI ACATGT 3 cut(s) 240, 359, 820
Psp1406I AACGTT 1 cut(s) 703
Psp6I CCWGG 3 cut(s) 145, 313, 926
PspGI CCWGG 3 cut(s) 145, 313, 926
PspLI CGTACG 1 cut(s) 1077
PspN4I GGNNCC 1 cut(s) 532
PspPI GGNCC 3 cut(s) 531, 776, 1031
PspXI VCTCGAGB 1 cut(s) 1133
PstNI CAGNNNCTG 1 cut(s) 1062
RruI TCGCGA 1 cut(s) 90
RsaI GTAC 2 cut(s) 583, 1079
RsaNI GTAC 2 cut(s) 582, 1078
SaqAI TTAA 3 cut(s) 968, 1008, 1068
SatI GCNGC 3 cut(s) 207, 423, 1099
Sau3AI GATC 5 cut(s) 18, 172, 187, 498, 658
Sau96I GGNCC 3 cut(s) 531, 776, 1031
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 6 cut(s) 147, 315, 451, 486, 827, 928
SexAI ACCWGGT 1 cut(s) 926
SfaNI GCATC 3 cut(s) 549, 571, 760
Sfr274I CTCGAG 1 cut(s) 1133
SinI GGWCC 3 cut(s) 531, 776, 1031
SlaI CTCGAG 1 cut(s) 1133
SmlI CTYRAG 3 cut(s) 1124, 1133, 1199
SmoI CTYRAG 3 cut(s) 1124, 1133, 1199
Sse9I AATT 5 cut(s) 664, 711, 796, 970, 1009
SsiI CCGC 3 cut(s) 385, 423, 963
StyD4I CCNGG 6 cut(s) 145, 313, 449, 484, 825, 926
StyI CCWWGG 2 cut(s) 459, 807
TaaI ACNGT 6 cut(s) 56, 77, 869, 1058, 1064, 1193
TaiI ACGT 2 cut(s) 706, 1079
TaqI TCGA 4 cut(s) 617, 861, 978, 1134
TasI AATT 5 cut(s) 664, 711, 796, 970, 1009
TatI WGTACW 1 cut(s) 581
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 6 cut(s) 680, 686, 755, 941, 1042, 1113
Tru1I TTAA 3 cut(s) 968, 1008, 1068
Tru9I TTAA 3 cut(s) 968, 1008, 1068
TscAI CASTG 1 cut(s) 1063
TseFI GTSAC 2 cut(s) 1058, 1084
TseI GCWGC 2 cut(s) 206, 1098
Tsp45I GTSAC 2 cut(s) 1058, 1084
TspDTI ATGAA 4 cut(s) 247, 341, 470, 969
TspRI CASTG 1 cut(s) 1063
VpaK11BI GGWCC 3 cut(s) 531, 776, 1031
XapI RAATTY 1 cut(s) 796
XceI RCATGY 3 cut(s) 244, 363, 824
XcmI CCANNNNNNNNNTGG 1 cut(s) 270
XhoI CTCGAG 1 cut(s) 1133
XmiI GTMKAC 1 cut(s) 1195
XmnI GAANNNNTTC 2 cut(s) 309, 623
Zsp2I ATGCAT 2 cut(s) 370, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.