Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006146

Physical Location & Seq

Genomic Coordinates Forward (+)

69104864 .. 69107730

Gene Structure 2867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0566200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAAGACGACTCGGCACAGCTTCCTTCTGGTTCTACTTCTGGTTATGTCTCTTGCTGTGTTTTCTTGTGTCGTCATAGCTTGCTCCGATGGACAGTGCAAGCTCTTAGATCAGTGCTCGATGGACGGAGATTGTGAGGCGGGGCTTTACTGTTTCGGTTGCCCTTTGGAGTTTTCAGGCTCCAGATGTGTGAGATCAACCACCACCAACCAATTCCAGCTTTTGAATAGTTCTCTACCATTCAACAAATATGCATTTTTGACAACCCACAATGCTTTTGCCATCGAAGGAGAGCCATCTCATACCGGAGTCCCTCGTGTTACCTTCACGAATCAAGAAGACACTGTCACTCAACAACTTAACAATGGAGTTAGAGCCCTAATGCTTGATACCTATGATTTTAAAGGAGATGTCTGGTTGTGCCATTCCTTCAAAGGACAATGCCATGACTACACTGCATTTGAGCCAGCTATAGATACATTAAACGAAATCCAAGCATTTTTATCAGCAAATCCAGGAGAAATCGTGACATTGATATTAGAGGACTATGTTGAAGCTCCAAACGGACTGACAAATGTTTTCAAATCTGCCGGATTGATGAAATACTGGTTTCCGGTATCAAACATGCCCAAAAGTGGTCAGGATTGGCCGCTGGTTAGAGATATGGTTGCCAAGAACCAAAGGCTACTTGTATTCACTTCAAAACAAGAGAAGGAACAATCCGAAGGGATTGCATACCAGTGGAACTACATGGTTGAAAACCAGTATGGAGACAATGGAATGAAAGCGGGAAGCTGTTCAAACAGAGGTGAATCGTCGCCTCTAAATGACAAGACTAAATCATTGCTATTGGTTAACTATTTTGGGTCAATTCCCATTAAGCAGCTATCATGTCAATTCAATTCTGAGGATTTGGTTAGCATGCTTAACACTTGCTATGGTGCTGCTGGAAACCGGTGGGCGAATTTTGTTGCGGTTGATTTTTACAAGAGGAGTGGAGGGGGGGGATCGTTTCAAGCTACAGACACTCTCAATGGGGAACTCATATGTGGATGTAACGATGTCCATGCATGTGCGCCAGGATCAACAACACCCTGCAAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

368

Amino Acids

40.54

Weight (kDa)

5.2

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI-PLC_cat	PF26178	76 - 358	8.1e-149	PI-PLC-like catalytic domain
PI-PLC_X	PF26146	106 - 330	4.4e-24	PI-PLC X

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01600 AT5G14490 AT5G14490 AT5G14490 AT5G14490
fragaria_vesca	FvH4_6g51660 FvH4_6g51660
malus_domestica	MD09G1023600.v1.1 MD17G1023100.v1.1
prunus_persica	Prupe.3G293200_v2.0.a1 Prupe.3G293200_v2.0.a1 Prupe.3G293200_v2.0.a1
pyrus_communis	pycom111g01970 pycom17g01980
rosa_chinensis	RchiOBHm_Chr2g0173191
rosa_laevigata	RLG00000022169
rosa_roxburghii	Rroxscaffold_2G00079130
rosa_rugosa	Rorug02G0566100 Rorug02G0566200 Rorug02G0566300.1 Rorug02G0566400 Rorug02G0566400
rosa_samantha	Rh2AG646400 Rh2BG657100 Rh2CG622200 Rh2DG670500
rosa_wichuraiana	Rw2G053090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	140, 650, 788, 974
AclWI	GGATC	2 cut(s)	1015, 1090
AcoI	YGGCCR	1 cut(s)	647
AcsI	RAATTY	1 cut(s)	964
AfiI	CCNNNNNNNGG	1 cut(s)	635
AgeI	ACCGGT	1 cut(s)	954
AjnI	CCWGG	2 cut(s)	514, 1078
AluBI	AGCT	9 cut(s)	21, 80, 103, 220, 470, 557, 795, 886, 1019
AluI	AGCT	9 cut(s)	21, 80, 103, 220, 470, 557, 795, 886, 1019
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	2 cut(s)	54, 765
AlwI	GGATC	2 cut(s)	1015, 1090
AoxI	GGCC	1 cut(s)	647
ApeKI	GCWGC	2 cut(s)	883, 944
ApoI	RAATTY	1 cut(s)	964
AsiGI	ACCGGT	1 cut(s)	954
Asp700I	GAANNNNTTC	1 cut(s)	796
AspLEI	GCGC	1 cut(s)	1078
AsuHPI	GGTGA	1 cut(s)	821
BanII	GRGCYC	1 cut(s)	379
BauI	CACGAG	1 cut(s)	315
BbsI	GAAGAC	2 cut(s)	11, 345
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	895, 931
BccI	CCATC	4 cut(s)	83, 115, 290, 304
BcgI	CGANNNNNNTGC	4 cut(s)	713, 747, 1049, 1083
BciT130I	CCWGG	2 cut(s)	516, 1080
BcoDI	GTCTC	2 cut(s)	54, 765
BfmI	CTRYAG	2 cut(s)	471, 1020
BisI	GCNGC	3 cut(s)	650, 884, 945
BlsI	GCNGC	3 cut(s)	651, 885, 946
Bme1390I	CCNGG	2 cut(s)	516, 1080
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	2 cut(s)	516, 1080
BpiI	GAAGAC	2 cut(s)	11, 345
BpmI	CTGGAG	1 cut(s)	166
BsaWI	WCCGGW	3 cut(s)	305, 613, 954
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse118I	RCCGGY	1 cut(s)	954
Bse1I	ACTGG	3 cut(s)	611, 739, 763
Bse3DI	GCAATG	1 cut(s)	842
BseBI	CCWGG	2 cut(s)	516, 1080
BseGI	GGATG	1 cut(s)	1058
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMI	GCAATG	1 cut(s)	842
BseMII	CTCAG	1 cut(s)	897
BseNI	ACTGG	3 cut(s)	611, 739, 763
BseRI	GAGGAG	1 cut(s)	1006
BseXI	GCAGC	2 cut(s)	895, 931
BshFI	GGCC	1 cut(s)	649
BshTI	ACCGGT	1 cut(s)	954
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	4 cut(s)	306, 591, 614, 955
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmAI	GTCTC	2 cut(s)	54, 765
BsmFI	GGGAC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	649
Bsp1286I	GDGCHC	2 cut(s)	119, 379
Bsp143I	GATC	4 cut(s)	109, 194, 1007, 1082
BspACI	CCGC	4 cut(s)	140, 650, 788, 974
BspANI	GGCC	1 cut(s)	649
BspCNI	CTCAG	1 cut(s)	898
BspLI	GGNNCC	1 cut(s)	181
BspPI	GGATC	2 cut(s)	1015, 1090
BsrDI	GCAATG	1 cut(s)	842
BsrFI	RCCGGY	1 cut(s)	954
BsrI	ACTGG	3 cut(s)	611, 739, 763
BssAI	RCCGGY	1 cut(s)	954
BssMI	GATC	4 cut(s)	109, 194, 1007, 1082
BssSI	CACGAG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	2 cut(s)	516, 1080
Bst4CI	ACNGT	3 cut(s)	96, 152, 346
BstC8I	GCNNGC	4 cut(s)	82, 101, 468, 923
BstDEI	CTNAG	2 cut(s)	106, 906
BstF5I	GGATG	1 cut(s)	1058
BstHHI	GCGC	1 cut(s)	1078
BstKTI	GATC	4 cut(s)	112, 197, 1010, 1085
BstMAI	GTCTC	2 cut(s)	54, 765
BstMBI	GATC	4 cut(s)	109, 194, 1007, 1082
BstNI	CCWGG	2 cut(s)	516, 1080
BstNSI	RCATGY	3 cut(s)	628, 925, 1074
BstSCI	CCNGG	2 cut(s)	514, 1078
BstSFI	CTRYAG	2 cut(s)	471, 1020
BstV1I	GCAGC	2 cut(s)	895, 931
BstV2I	GAAGAC	2 cut(s)	11, 345
BsuRI	GGCC	1 cut(s)	649
BtsCI	GGATG	1 cut(s)	1058
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	5 cut(s)	101, 119, 342, 453, 746
Cac8I	GCNNGC	4 cut(s)	82, 101, 468, 923
CfoI	GCGC	1 cut(s)	1078
Cfr10I	RCCGGY	1 cut(s)	954
CspAI	ACCGGT	1 cut(s)	954
CspCI	CAANNNNNGTGG	2 cut(s)	976, 1011
CviAII	CATG	7 cut(s)	446, 625, 751, 891, 922, 1067, 1071
DdeI	CTNAG	2 cut(s)	106, 906
DpnI	GATC	4 cut(s)	111, 196, 1009, 1084
DpnII	GATC	4 cut(s)	109, 194, 1007, 1082
DraI	TTTAAA	1 cut(s)	403
EaeI	YGGCCR	1 cut(s)	647
Eco24I	GRGCYC	1 cut(s)	379
EcoRII	CCWGG	2 cut(s)	514, 1078
EcoT22I	ATGCAT	2 cut(s)	256, 1072
EcoT38I	GRGCYC	1 cut(s)	379
FaeI	CATG	7 cut(s)	449, 628, 754, 894, 925, 1070, 1074
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	7 cut(s)	445, 624, 750, 890, 921, 1066, 1070
FauI	CCCGC	2 cut(s)	133, 781
FauNDI	CATATG	1 cut(s)	1046
Fnu4HI	GCNGC	3 cut(s)	650, 884, 945
FokI	GGATG	1 cut(s)	1065
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	3 cut(s)	650, 884, 945
GlaI	GCGC	1 cut(s)	1077
GluI	GCNGC	3 cut(s)	650, 884, 945
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	649
HapII	CCGG	4 cut(s)	306, 591, 614, 955
HhaI	GCGC	1 cut(s)	1078
Hin1II	CATG	7 cut(s)	449, 628, 754, 894, 925, 1070, 1074
Hin6I	GCGC	1 cut(s)	1076
HinP1I	GCGC	1 cut(s)	1076
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HinfI	GANTC	4 cut(s)	10, 309, 331, 812
HpaI	GTTAAC	1 cut(s)	856
HpaII	CCGG	4 cut(s)	306, 591, 614, 955
HphI	GGTGA	1 cut(s)	821
Hpy166II	GTNNAC	1 cut(s)	856
Hpy188I	TCNGA	3 cut(s)	88, 724, 907
Hpy188III	TCNNGA	5 cut(s)	183, 328, 335, 526, 641
Hpy8I	GTNNAC	1 cut(s)	856
Hpy99I	CGWCG	1 cut(s)	820
HpyAV	CCTTC	6 cut(s)	35, 281, 334, 439, 706, 719
HpyCH4III	ACNGT	3 cut(s)	96, 152, 346
HpyCH4V	TGCA	6 cut(s)	99, 254, 458, 734, 1070, 1098
HpyF3I	CTNAG	2 cut(s)	106, 906
Hsp92II	CATG	7 cut(s)	449, 628, 754, 894, 925, 1070, 1074
HspAI	GCGC	1 cut(s)	1076
KspAI	GTTAAC	1 cut(s)	856
Kzo9I	GATC	4 cut(s)	109, 194, 1007, 1082
LmnI	GCTCC	3 cut(s)	89, 185, 562
Lsp1109I	GCAGC	2 cut(s)	895, 931
MaeIII	GTNAC	4 cut(s)	319, 346, 526, 1055
MalI	GATC	4 cut(s)	111, 196, 1009, 1084
MboI	GATC	4 cut(s)	109, 194, 1007, 1082
MboII	GAAGA	2 cut(s)	16, 350
MhlI	GDGCHC	2 cut(s)	119, 379
MluCI	AATT	5 cut(s)	212, 870, 896, 901, 964
MlyI	GAGTC	2 cut(s)	4, 318
MnlI	CCTC	8 cut(s)	130, 324, 535, 800, 831, 901, 984, 992
Mph1103I	ATGCAT	2 cut(s)	256, 1072
MroXI	GAANNNNTTC	1 cut(s)	796
MseI	TTAA	6 cut(s)	360, 402, 482, 855, 879, 927
MslI	CAYNNNNRTG	2 cut(s)	739, 1071
MspA1I	CMGCKG	1 cut(s)	652
MspI	CCGG	4 cut(s)	306, 591, 614, 955
MspR9I	CCNGG	2 cut(s)	516, 1080
MvaI	CCWGG	2 cut(s)	516, 1080
NdeI	CATATG	1 cut(s)	1046
NdeII	GATC	4 cut(s)	109, 194, 1007, 1082
NlaIII	CATG	7 cut(s)	449, 628, 754, 894, 925, 1070, 1074
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	2 cut(s)	346, 526
NsiI	ATGCAT	2 cut(s)	256, 1072
NspI	RCATGY	3 cut(s)	628, 925, 1074
PaeI	GCATGC	1 cut(s)	925
PdmI	GAANNNNTTC	1 cut(s)	796
PfeI	GAWTC	2 cut(s)	331, 812
PflFI	GACNNNGTC	1 cut(s)	344
PfoI	TCCNGGA	1 cut(s)	514
PinAI	ACCGGT	1 cut(s)	954
PkrI	GCNGC	3 cut(s)	651, 885, 946
PleI	GAGTC	2 cut(s)	4, 317
PpsI	GAGTC	2 cut(s)	4, 317
Psp6I	CCWGG	2 cut(s)	514, 1078
PspGI	CCWGG	2 cut(s)	514, 1078
PspN4I	GGNNCC	1 cut(s)	181
PsyI	GACNNNGTC	1 cut(s)	344
RseI	CAYNNNNRTG	2 cut(s)	739, 1071
SaqAI	TTAA	6 cut(s)	360, 402, 482, 855, 879, 927
SatI	GCNGC	3 cut(s)	650, 884, 945
Sau3AI	GATC	4 cut(s)	109, 194, 1007, 1082
SchI	GAGTC	2 cut(s)	4, 318
ScrFI	CCNGG	2 cut(s)	516, 1080
SduI	GDGCHC	2 cut(s)	119, 379
SfcI	CTRYAG	2 cut(s)	471, 1020
SmiMI	CAYNNNNRTG	2 cut(s)	739, 1071
SphI	GCATGC	1 cut(s)	925
Sse9I	AATT	5 cut(s)	212, 870, 896, 901, 964
SsiI	CCGC	4 cut(s)	140, 650, 788, 974
StyD4I	CCNGG	2 cut(s)	514, 1078
TaaI	ACNGT	3 cut(s)	96, 152, 346
TaqI	TCGA	2 cut(s)	119, 285
TasI	AATT	5 cut(s)	212, 870, 896, 901, 964
TauI	GCSGC	1 cut(s)	652
TfiI	GAWTC	2 cut(s)	331, 812
Tru1I	TTAA	6 cut(s)	360, 402, 482, 855, 879, 927
Tru9I	TTAA	6 cut(s)	360, 402, 482, 855, 879, 927
TscAI	CASTG	5 cut(s)	101, 119, 349, 460, 746
TseFI	GTSAC	2 cut(s)	346, 526
TseI	GCWGC	2 cut(s)	883, 944
Tsp45I	GTSAC	2 cut(s)	346, 526
TspDTI	ATGAA	3 cut(s)	17, 614, 797
TspGWI	ACGGA	2 cut(s)	141, 579
TspRI	CASTG	5 cut(s)	101, 119, 349, 460, 746
Tth111I	GACNNNGTC	1 cut(s)	344
XapI	RAATTY	1 cut(s)	964
XceI	RCATGY	3 cut(s)	628, 925, 1074
XmnI	GAANNNNTTC	1 cut(s)	796
Zsp2I	ATGCAT	2 cut(s)	256, 1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.