Rw2G053090
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0006146
Physical Location & Seq
Forward (+)
80937933 .. 80940512
2580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G053090.1

Sequence Viewer

Length: 981 bp
ATGTTTATTGATGAGTTCATCCCAACTATTGATTGGGATATCGGCATTTGCTACACTCATCCTGAAAACCTTCCTGGTGCAAAGAAAGATGGAAGTAGCTTCCATTTCTTTCATAAAACATGTAATGCATATTCTACTGGTCGGCGGAAGCGTCGCAAGATTGACAAAGAGCATGACTTGGCCGCACAGGCTGTTCGTTGGCACAAGACCGGGAAGACCAAGGCTATAAGAAGTGGAGTTCATCCGGGCTGGAAGAAGATCATGGTGCTGTATAAAAGTTCAATCAAAGGGTCCAAAGCAGATAAGACTGACTGGGTGATGCATCAGTATCATTTGGGAAGTACAGAAGATGAGAAAGAAGGTGAATATGTGGTGTCGAAGATATTCTATCAACAGCCAAAGCAGGCTGACAAGAATGATCACAATTTGGTCATTGAAGAATCTGAATCCTATGTGCTTCAACGTTCTCCAATTACCCCCATAACAAATCCTCCGACTACTCCTGCACCAGAGGAATCTGCTTGGTGTGATGCTGGTCCTGACGAATATATGCAGAATTCCTATGCCAAGGTAGCAGAACATGTCCCGGAAGTATCTCAATATGCCCAACTTAGGAAGTTCGAGGACAGTATGTCTCATGTCCCCCAACTTGATACTCAGTTTGAGAACAATGTGGGGCAACCTACCTGGTTGGCAGGCGAATCTCAGGTTGATGAATACTGCGGGTTAAATTGCTTCGATGACACCTTGTTATGCAAGGAGACATTTAATTCTTCCACTCCTCTAAATGGTCCAGTTCTGAATCCCATATCTAACAGTGACTGTGTTAACAACACGTACGGGGTGACTGGAAACAGCAGCACAGCATTTGGAATCCCTGACCTTGAGAACCTCGAGTTTGATAGTCCACCAGATTTCCAGCTAACTGGTTTGCAGTTTTGTTCCCAAGACAGTATACTTGAGTGGTTGGACAGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

326

Amino Acids

36.88

Weight (kDa)

5.09

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 5 - 112 2.4e-18 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 955
AciI CCGC 3 cut(s) 145, 183, 723
AclI AACGTT 1 cut(s) 463
AcoI YGGCCR 1 cut(s) 180
AcsI RAATTY 1 cut(s) 556
AfaI GTAC 2 cut(s) 343, 839
AfiI CCNNNNNNNGG 2 cut(s) 612, 788
AflIII ACRYGT 3 cut(s) 119, 580, 834
AgsI TTSAA 3 cut(s) 282, 437, 461
AhdI GACNNNNNGTC 1 cut(s) 631
AjnI CCWGG 2 cut(s) 73, 686
AluBI AGCT 2 cut(s) 99, 922
AluI AGCT 2 cut(s) 99, 922
Alw26I GTCTC 2 cut(s) 639, 755
AlwNI CAGNNNCTG 1 cut(s) 822
Ama87I CYCGRG 1 cut(s) 893
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 1 cut(s) 858
ApoI RAATTY 1 cut(s) 556
Asp700I GAANNNNTTC 2 cut(s) 69, 383
AspS9I GGNCC 3 cut(s) 291, 536, 791
AsuC2I CCSGG 3 cut(s) 211, 246, 587
AsuHPI GGTGA 3 cut(s) 328, 374, 856
AvaI CYCGRG 1 cut(s) 893
AvaII GGWCC 3 cut(s) 291, 536, 791
BbsI GAAGAC 1 cut(s) 221
BbvI GCAGC 1 cut(s) 870
BccI CCATC 1 cut(s) 83
BciT130I CCWGG 2 cut(s) 75, 688
BclI TGATCA 1 cut(s) 418
BcnI CCSGG 3 cut(s) 211, 246, 587
BcoDI GTCTC 2 cut(s) 639, 755
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 2 cut(s) 183, 859
BlsI GCNGC 2 cut(s) 184, 860
Bme1390I CCNGG 5 cut(s) 75, 211, 246, 587, 688
Bme18I GGWCC 3 cut(s) 291, 536, 791
BmeRI GACNNNNNGTC 1 cut(s) 631
BmeT110I CYCGRG 1 cut(s) 893
BmgT120I GGNCC 3 cut(s) 291, 536, 791
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 5 cut(s) 75, 211, 246, 587, 688
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 3 cut(s) 309, 331, 520
BmuI ACTGGG 1 cut(s) 322
BpiI GAAGAC 1 cut(s) 221
BpuEI CTTGAG 2 cut(s) 905, 980
BpuMI CCSGG 3 cut(s) 211, 246, 587
BsaAI YACGTR 1 cut(s) 837
BsaJI CCNNGG 2 cut(s) 219, 567
BsaXI ACNNNNNCTCC 2 cut(s) 475, 505
Bsc4I CCNNNNNNNGG 2 cut(s) 612, 788
Bse1I ACTGG 5 cut(s) 142, 317, 794, 853, 931
BseBI CCWGG 2 cut(s) 75, 688
BseDI CCNNGG 2 cut(s) 219, 567
BseGI GGATG 3 cut(s) 18, 58, 241
BseLI CCNNNNNNNGG 2 cut(s) 612, 788
BseMII CTCAG 2 cut(s) 671, 719
BseNI ACTGG 5 cut(s) 142, 317, 794, 853, 931
BseRI GAGGAG 1 cut(s) 771
BseXI GCAGC 1 cut(s) 870
BsgI GTGCAG 1 cut(s) 489
BshFI GGCC 1 cut(s) 182
BsiHKCI CYCGRG 1 cut(s) 893
BsiSI CCGG 3 cut(s) 210, 245, 587
BsiWI CGTACG 1 cut(s) 837
BslFI GGGAC 2 cut(s) 569, 626
BslI CCNNNNNNNGG 2 cut(s) 612, 788
BsmAI GTCTC 2 cut(s) 639, 755
BsmFI GGGAC 2 cut(s) 569, 626
BsnI GGCC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 893
Bsp143I GATC 2 cut(s) 258, 418
BspACI CCGC 3 cut(s) 145, 183, 723
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 2 cut(s) 670, 718
BspLI GGNNCC 1 cut(s) 292
BsrI ACTGG 5 cut(s) 142, 317, 794, 853, 931
BssECI CCNNGG 2 cut(s) 219, 567
BssMI GATC 2 cut(s) 258, 418
BssNAI GTATAC 1 cut(s) 956
BssT1I CCWWGG 2 cut(s) 219, 567
Bst1107I GTATAC 1 cut(s) 956
Bst2UI CCWGG 2 cut(s) 75, 688
Bst4CI ACNGT 4 cut(s) 629, 818, 824, 953
BstBAI YACGTR 1 cut(s) 837
BstC8I GCNNGC 2 cut(s) 405, 697
BstDEI CTNAG 3 cut(s) 611, 657, 705
BstF5I GGATG 3 cut(s) 18, 58, 241
BstKTI GATC 2 cut(s) 261, 421
BstMAI GTCTC 2 cut(s) 639, 755
BstMBI GATC 2 cut(s) 258, 418
BstMWI GCNNNNNNNGC 2 cut(s) 188, 572
BstNI CCWGG 2 cut(s) 75, 688
BstNSI RCATGY 2 cut(s) 123, 584
BstSCI CCNGG 5 cut(s) 73, 209, 244, 585, 686
BstV1I GCAGC 1 cut(s) 870
BstV2I GAAGAC 1 cut(s) 221
BstXI CCANNNNNNTGG 1 cut(s) 926
BstZ17I GTATAC 1 cut(s) 956
BsuRI GGCC 1 cut(s) 182
BtsCI GGATG 3 cut(s) 18, 58, 241
BtsIMutI CAGTG 1 cut(s) 823
Cac8I GCNNGC 2 cut(s) 405, 697
CaiI CAGNNNCTG 1 cut(s) 822
Cfr13I GGNCC 3 cut(s) 291, 536, 791
CseI GACGC 1 cut(s) 140
CsiI ACCWGGT 1 cut(s) 686
Csp6I GTAC 2 cut(s) 342, 838
CviAII CATG 5 cut(s) 120, 173, 262, 581, 638
CviJI RGCY 8 cut(s) 99, 182, 191, 224, 249, 397, 407, 922
CviKI_1 RGCY 8 cut(s) 99, 182, 191, 224, 249, 397, 407, 922
CviQI GTAC 2 cut(s) 342, 838
DdeI CTNAG 3 cut(s) 611, 657, 705
DpnI GATC 2 cut(s) 260, 420
DpnII GATC 2 cut(s) 258, 418
DriI GACNNNNNGTC 1 cut(s) 631
EaeI YGGCCR 1 cut(s) 180
Eam1105I GACNNNNNGTC 1 cut(s) 631
EciI GGCGGA 1 cut(s) 160
Eco130I CCWWGG 2 cut(s) 219, 567
Eco32I GATATC 1 cut(s) 40
Eco47I GGWCC 3 cut(s) 291, 536, 791
Eco88I CYCGRG 1 cut(s) 893
EcoRI GAATTC 1 cut(s) 556
EcoRII CCWGG 2 cut(s) 73, 686
EcoRV GATATC 1 cut(s) 40
EcoT14I CCWWGG 2 cut(s) 219, 567
EcoT22I ATGCAT 2 cut(s) 130, 324
ErhI CCWWGG 2 cut(s) 219, 567
FaeI CATG 5 cut(s) 123, 176, 265, 584, 641
FaqI GGGAC 2 cut(s) 569, 626
FatI CATG 5 cut(s) 119, 172, 261, 580, 637
FauI CCCGC 1 cut(s) 716
FbaI TGATCA 1 cut(s) 418
FblI GTMKAC 1 cut(s) 955
Fnu4HI GCNGC 2 cut(s) 183, 859
FokI GGATG 3 cut(s) 5, 45, 228
Fsp4HI GCNGC 2 cut(s) 183, 859
GluI GCNGC 2 cut(s) 183, 859
HaeIII GGCC 1 cut(s) 182
HapII CCGG 3 cut(s) 210, 245, 587
HgaI GACGC 1 cut(s) 140
Hin1II CATG 5 cut(s) 123, 176, 265, 584, 641
HincII GTYRAC 1 cut(s) 829
HindII GTYRAC 1 cut(s) 829
HinfI GANTC 6 cut(s) 440, 446, 515, 701, 802, 873
HpaI GTTAAC 1 cut(s) 829
HpaII CCGG 3 cut(s) 210, 245, 587
HphI GGTGA 3 cut(s) 328, 374, 856
Hpy166II GTNNAC 3 cut(s) 829, 908, 956
Hpy188I TCNGA 3 cut(s) 445, 495, 801
Hpy188III TCNNGA 2 cut(s) 62, 539
Hpy8I GTNNAC 3 cut(s) 829, 908, 956
Hpy99I CGWCG 1 cut(s) 156
HpyAV CCTTC 2 cut(s) 80, 353
HpyCH4III ACNGT 4 cut(s) 629, 818, 824, 953
HpyCH4IV ACGT 2 cut(s) 463, 836
HpyCH4V TGCA 7 cut(s) 80, 128, 322, 506, 553, 756, 934
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 572
HpyF3I CTNAG 3 cut(s) 611, 657, 705
HpySE526I ACGT 2 cut(s) 463, 836
Hsp92II CATG 5 cut(s) 123, 176, 265, 584, 641
Ksp22I TGATCA 1 cut(s) 418
KspAI GTTAAC 1 cut(s) 829
Kzo9I GATC 2 cut(s) 258, 418
Lsp1109I GCAGC 1 cut(s) 870
LweI GCATC 3 cut(s) 309, 331, 520
MabI ACCWGGT 1 cut(s) 686
MaeII ACGT 2 cut(s) 463, 836
MaeIII GTNAC 2 cut(s) 818, 844
MalI GATC 2 cut(s) 260, 420
MboI GATC 2 cut(s) 258, 418
MboII GAAGA 7 cut(s) 226, 265, 268, 359, 391, 449, 765
MluCI AATT 5 cut(s) 424, 471, 556, 730, 769
MmeI TCCRAC 2 cut(s) 518, 948
MnlI CCTC 5 cut(s) 501, 505, 616, 792, 902
Mph1103I ATGCAT 2 cut(s) 130, 324
MroXI GAANNNNTTC 2 cut(s) 69, 383
MseI TTAA 3 cut(s) 728, 768, 828
MspI CCGG 3 cut(s) 210, 245, 587
MspR9I CCNGG 5 cut(s) 75, 211, 246, 587, 688
MvaI CCWGG 2 cut(s) 75, 688
MwoI GCNNNNNNNGC 2 cut(s) 188, 572
NciI CCSGG 3 cut(s) 211, 246, 587
NdeII GATC 2 cut(s) 258, 418
NlaIII CATG 5 cut(s) 123, 176, 265, 584, 641
NlaIV GGNNCC 1 cut(s) 292
NmuCI GTSAC 2 cut(s) 818, 844
NsiI ATGCAT 2 cut(s) 130, 324
NspI RCATGY 2 cut(s) 123, 584
PaeR7I CTCGAG 1 cut(s) 893
PciI ACATGT 2 cut(s) 119, 580
PcsI WCGNNNNNNNCGW 1 cut(s) 148
PdmI GAANNNNTTC 2 cut(s) 69, 383
PfeI GAWTC 6 cut(s) 440, 446, 515, 701, 802, 873
Pfl23II CGTACG 1 cut(s) 837
PfoI TCCNGGA 1 cut(s) 585
PkrI GCNGC 2 cut(s) 184, 860
Ppu21I YACGTR 1 cut(s) 837
PscI ACATGT 2 cut(s) 119, 580
Psp1406I AACGTT 1 cut(s) 463
Psp6I CCWGG 2 cut(s) 73, 686
PspGI CCWGG 2 cut(s) 73, 686
PspLI CGTACG 1 cut(s) 837
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 3 cut(s) 291, 536, 791
PspXI VCTCGAGB 1 cut(s) 893
PstNI CAGNNNCTG 1 cut(s) 822
RsaI GTAC 2 cut(s) 343, 839
RsaNI GTAC 2 cut(s) 342, 838
SaqAI TTAA 3 cut(s) 728, 768, 828
SatI GCNGC 2 cut(s) 183, 859
Sau3AI GATC 2 cut(s) 258, 418
Sau96I GGNCC 3 cut(s) 291, 536, 791
ScrFI CCNGG 5 cut(s) 75, 211, 246, 587, 688
SexAI ACCWGGT 1 cut(s) 686
SfaNI GCATC 3 cut(s) 309, 331, 520
Sfr274I CTCGAG 1 cut(s) 893
SinI GGWCC 3 cut(s) 291, 536, 791
SlaI CTCGAG 1 cut(s) 893
SmlI CTYRAG 3 cut(s) 884, 893, 959
SmoI CTYRAG 3 cut(s) 884, 893, 959
Sse9I AATT 5 cut(s) 424, 471, 556, 730, 769
SsiI CCGC 3 cut(s) 145, 183, 723
StyD4I CCNGG 5 cut(s) 73, 209, 244, 585, 686
StyI CCWWGG 2 cut(s) 219, 567
TaaI ACNGT 4 cut(s) 629, 818, 824, 953
TaiI ACGT 2 cut(s) 466, 839
TaqI TCGA 4 cut(s) 377, 621, 738, 894
TasI AATT 5 cut(s) 424, 471, 556, 730, 769
TatI WGTACW 1 cut(s) 341
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 6 cut(s) 440, 446, 515, 701, 802, 873
Tru1I TTAA 3 cut(s) 728, 768, 828
Tru9I TTAA 3 cut(s) 728, 768, 828
TscAI CASTG 1 cut(s) 823
TseFI GTSAC 2 cut(s) 818, 844
TseI GCWGC 1 cut(s) 858
Tsp45I GTSAC 2 cut(s) 818, 844
TspDTI ATGAA 4 cut(s) 7, 101, 230, 729
TspRI CASTG 1 cut(s) 823
VpaK11BI GGWCC 3 cut(s) 291, 536, 791
XapI RAATTY 1 cut(s) 556
XceI RCATGY 2 cut(s) 123, 584
XcmI CCANNNNNNNNNTGG 1 cut(s) 30
XhoI CTCGAG 1 cut(s) 893
XmiI GTMKAC 1 cut(s) 955
XmnI GAANNNNTTC 2 cut(s) 69, 383
Zsp2I ATGCAT 2 cut(s) 130, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.