AT3G01790

ribosomal protein L13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006270
Physical Location & Seq
Reverse (-)
283179 .. 285840
2662 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G01790.2

Sequence Viewer

Length: 618 bp
ATGGCGACTCAGGCTGCTGCTGCTGCCTCATTCAAGGGCAACTTAAAGAAAGCTGTGGCAGGTATAAAGCGTATCAATCTCGACGGTCTTCGTTGGCGTGTTTTTGATGCCAGAGGCCAGGTTCTTGGTAGACTAGCTTCCCAGATATCAACCGTGCTTCAAGCCAAAGATAAGCCTACTTATTGTCCTAACCGCGACGATGGCGATATTTGTATTGTTCTCAATGCTAAGGAAATCGGCTTCACAGGAAGAAAGCTCACTGACAAATTCTACCGTTGGCATACTGGGTACATCGGACACCTGAAGGAACGGAGTCTGAAAGATCAGATGGCCAAAGATCCCACAGAGGTCATTCGTAAGGCTGTCTGGCGCATGCTTCCAAGTAACAATTTGCGTGATGACAGGGATCGGAAGCTGAGGATATTTGAAGGCGGTGAGCATCCTTTTGGGGACAAGCCACTTGAGCCATTTGTGATGCCGCCTCGTAGAGTTAGAGAGATGCGACCGCGCGCAAGGCGAGCAATGATCCGTGCGCAGAAGAAGGCAGAGCAGGCAGAAAATGAGGGAACAGAGGTAAAGAAAGGAAAGAAGAGGACCCTCTCTGAAGTACCTGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L13

Protein Analysis

205

Amino Acids

23.38

Weight (kDa)

10.35

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L13 PF00572 31 - 148 9.9e-42 Ribosomal protein L13
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 534
Acc36I ACCTGC 1 cut(s) 50
AccI GTMKAC 1 cut(s) 130
AccII CGCG 3 cut(s) 195, 508, 510
AciI CCGC 4 cut(s) 193, 432, 479, 506
AclWI GGATC 3 cut(s) 332, 414, 520
AcoI YGGCCR 1 cut(s) 330
AcsI RAATTY 1 cut(s) 266
AcuI CTGAAG 1 cut(s) 323
AfaI GTAC 2 cut(s) 290, 609
AgsI TTSAA 3 cut(s) 34, 161, 428
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 4 cut(s) 53, 137, 256, 415
AluI AGCT 4 cut(s) 53, 137, 256, 415
AlwI GGATC 3 cut(s) 332, 414, 520
AoxI GGCC 2 cut(s) 115, 330
ApeKI GCWGC 4 cut(s) 14, 17, 20, 23
ApoI RAATTY 1 cut(s) 266
AspLEI GCGC 4 cut(s) 372, 510, 512, 535
AspS9I GGNCC 1 cut(s) 594
AsuHPI GGTGA 1 cut(s) 446
AvaII GGWCC 1 cut(s) 594
BalI TGGCCA 1 cut(s) 332
BarI GAAGNNNNNNTAC 2 cut(s) 121, 153
BbsI GAAGAC 1 cut(s) 80
BbvCI CCTCAGC 1 cut(s) 416
BbvI GCAGC 3 cut(s) 4, 7, 10
BccI CCATC 2 cut(s) 194, 322
BciT130I CCWGG 1 cut(s) 119
BfaI CTAG 1 cut(s) 134
BfuAI ACCTGC 1 cut(s) 50
BisI GCNGC 5 cut(s) 15, 18, 21, 24, 479
BlsI GCNGC 5 cut(s) 16, 19, 22, 25, 480
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 1 cut(s) 594
BmgT120I GGNCC 1 cut(s) 594
BmiI GGNNCC 1 cut(s) 596
BmrFI CCNGG 1 cut(s) 119
BmrI ACTGGG 1 cut(s) 294
BmsI GCATC 4 cut(s) 97, 448, 465, 489
BmuI ACTGGG 1 cut(s) 294
BpiI GAAGAC 1 cut(s) 80
Bpu10I CCTNAGC 2 cut(s) 228, 416
BpuEI CTTGAG 1 cut(s) 482
Bse1I ACTGG 1 cut(s) 289
Bse3DI GCAATG 1 cut(s) 528
BseBI CCWGG 1 cut(s) 119
BseGI GGATG 1 cut(s) 439
BseMI GCAATG 1 cut(s) 528
BseMII CTCAG 2 cut(s) 23, 407
BseNI ACTGG 1 cut(s) 289
BsePI GCGCGC 1 cut(s) 508
BseXI GCAGC 3 cut(s) 4, 7, 10
Bsh1236I CGCG 3 cut(s) 195, 508, 510
Bsh1285I CGRYCG 1 cut(s) 506
BshFI GGCC 2 cut(s) 117, 332
BsiEI CGRYCG 1 cut(s) 506
BslFI GGGAC 1 cut(s) 464
BsmFI GGGAC 1 cut(s) 464
BsnI GGCC 2 cut(s) 117, 332
Bsp143I GATC 4 cut(s) 322, 337, 406, 525
BspACI CCGC 4 cut(s) 193, 432, 479, 506
BspANI GGCC 2 cut(s) 117, 332
BspCNI CTCAG 2 cut(s) 22, 408
BspFNI CGCG 3 cut(s) 195, 508, 510
BspLI GGNNCC 1 cut(s) 596
BspMI ACCTGC 1 cut(s) 50
BspPI GGATC 3 cut(s) 332, 414, 520
BsrDI GCAATG 1 cut(s) 528
BsrI ACTGG 1 cut(s) 289
BssHII GCGCGC 1 cut(s) 508
BssMI GATC 4 cut(s) 322, 337, 406, 525
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 3 cut(s) 86, 154, 275
Bst6I CTCTTC 1 cut(s) 584
BstC8I GCNNGC 4 cut(s) 374, 510, 519, 552
BstDEI CTNAG 3 cut(s) 9, 228, 416
BstF5I GGATG 1 cut(s) 439
BstFNI CGCG 3 cut(s) 195, 508, 510
BstHHI GCGC 4 cut(s) 372, 510, 512, 535
BstKTI GATC 4 cut(s) 325, 340, 409, 528
BstMBI GATC 4 cut(s) 322, 337, 406, 525
BstMCI CGRYCG 1 cut(s) 506
BstMWI GCNNNNNNNGC 8 cut(s) 11, 20, 23, 201, 463, 514, 518, 551
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 1 cut(s) 117
BstUI CGCG 3 cut(s) 195, 508, 510
BstV1I GCAGC 3 cut(s) 4, 7, 10
BstV2I GAAGAC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 337
BstXI CCANNNNNNTGG 1 cut(s) 125
BstYI RGATCY 1 cut(s) 337
BsuRI GGCC 2 cut(s) 117, 332
BtsCI GGATG 1 cut(s) 439
BtsIMutI CAGTG 1 cut(s) 258
BveI ACCTGC 1 cut(s) 50
Cac8I GCNNGC 4 cut(s) 374, 510, 519, 552
CfoI GCGC 4 cut(s) 372, 510, 512, 535
Cfr13I GGNCC 1 cut(s) 594
Csp6I GTAC 2 cut(s) 289, 608
CviAII CATG 1 cut(s) 373
CviQI GTAC 2 cut(s) 289, 608
DdeI CTNAG 3 cut(s) 9, 228, 416
DpnI GATC 4 cut(s) 324, 339, 408, 527
DpnII GATC 4 cut(s) 322, 337, 406, 525
EaeI YGGCCR 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 584
EarI CTCTTC 1 cut(s) 584
Eco32I GATATC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 594
Eco57I CTGAAG 1 cut(s) 323
EcoO109I RGGNCCY 1 cut(s) 594
EcoRII CCWGG 1 cut(s) 117
EcoRV GATATC 1 cut(s) 147
FaeI CATG 1 cut(s) 376
FaiI YATR 3 cut(s) 65, 282, 374
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FaqI GGGAC 1 cut(s) 464
FatI CATG 1 cut(s) 372
FblI GTMKAC 1 cut(s) 130
Fnu4HI GCNGC 5 cut(s) 15, 18, 21, 24, 479
FokI GGATG 1 cut(s) 426
Fsp4HI GCNGC 5 cut(s) 15, 18, 21, 24, 479
FspBI CTAG 1 cut(s) 134
FspI TGCGCA 1 cut(s) 534
GlaI GCGC 4 cut(s) 371, 509, 511, 534
GluI GCNGC 5 cut(s) 15, 18, 21, 24, 479
HaeIII GGCC 2 cut(s) 117, 332
HhaI GCGC 4 cut(s) 372, 510, 512, 535
Hin1II CATG 1 cut(s) 376
Hin6I GCGC 4 cut(s) 370, 508, 510, 533
HinP1I GCGC 4 cut(s) 370, 508, 510, 533
HinfI GANTC 2 cut(s) 7, 313
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 5 cut(s) 296, 318, 327, 411, 604
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 1 cut(s) 131
Hpy99I CGWCG 2 cut(s) 86, 200
HpyAV CCTTC 3 cut(s) 298, 422, 535
HpyCH4III ACNGT 3 cut(s) 86, 154, 275
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 20, 23, 201, 463, 514, 518, 551
HpyF3I CTNAG 3 cut(s) 9, 228, 416
Hsp92II CATG 1 cut(s) 376
HspAI GCGC 4 cut(s) 370, 508, 510, 533
Kzo9I GATC 4 cut(s) 322, 337, 406, 525
Lsp1109I GCAGC 3 cut(s) 4, 7, 10
LweI GCATC 4 cut(s) 97, 448, 465, 489
MaeI CTAG 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 383
MalI GATC 4 cut(s) 324, 339, 408, 527
MboI GATC 4 cut(s) 322, 337, 406, 525
MboII GAAGA 4 cut(s) 80, 261, 550, 601
MflI RGATCY 1 cut(s) 337
MlsI TGGCCA 1 cut(s) 332
MluCI AATT 2 cut(s) 266, 388
MluNI TGGCCA 1 cut(s) 332
MlyI GAGTC 1 cut(s) 322
MnlI CCTC 9 cut(s) 37, 107, 340, 411, 492, 556, 565, 585, 608
Mox20I TGGCCA 1 cut(s) 332
MscI TGGCCA 1 cut(s) 332
MseI TTAA 1 cut(s) 44
Msp20I TGGCCA 1 cut(s) 332
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 3 cut(s) 195, 508, 510
MwoI GCNNNNNNNGC 8 cut(s) 11, 20, 23, 201, 463, 514, 518, 551
NdeII GATC 4 cut(s) 322, 337, 406, 525
NlaIII CATG 1 cut(s) 376
NlaIV GGNNCC 1 cut(s) 596
NsbI TGCGCA 1 cut(s) 534
NspI RCATGY 1 cut(s) 376
PaeI GCATGC 1 cut(s) 376
PauI GCGCGC 1 cut(s) 508
PkrI GCNGC 5 cut(s) 16, 19, 22, 25, 480
PleI GAGTC 1 cut(s) 321
PpsI GAGTC 1 cut(s) 321
PpuMI RGGWCCY 1 cut(s) 594
Psp5II RGGWCCY 1 cut(s) 594
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 596
PspPI GGNCC 1 cut(s) 594
PspPPI RGGWCCY 1 cut(s) 594
PsuI RGATCY 1 cut(s) 337
PteI GCGCGC 1 cut(s) 508
RsaI GTAC 2 cut(s) 290, 609
RsaNI GTAC 2 cut(s) 289, 608
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 5 cut(s) 15, 18, 21, 24, 479
Sau3AI GATC 4 cut(s) 322, 337, 406, 525
Sau96I GGNCC 1 cut(s) 594
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 1 cut(s) 119
SfaNI GCATC 4 cut(s) 97, 448, 465, 489
SinI GGWCC 1 cut(s) 594
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
SphI GCATGC 1 cut(s) 376
Sse9I AATT 2 cut(s) 266, 388
SsiI CCGC 4 cut(s) 193, 432, 479, 506
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 117
TaaI ACNGT 3 cut(s) 86, 154, 275
TaqI TCGA 1 cut(s) 81
TasI AATT 2 cut(s) 266, 388
TauI GCSGC 1 cut(s) 481
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 1 cut(s) 265
TseI GCWGC 4 cut(s) 14, 17, 20, 23
TspGWI ACGGA 2 cut(s) 325, 518
TspRI CASTG 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 594
XapI RAATTY 1 cut(s) 266
XceI RCATGY 1 cut(s) 376
XmiI GTMKAC 1 cut(s) 130
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.