Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006270

Physical Location & Seq

Genomic Coordinates Forward (+)

70262499 .. 70268644

Gene Structure 6146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0579300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3093 bp

ATGTCGACCCCGAAACCGCAGAGGTCGAAAGAAGAGCTGGAGGACATAATCCTCCGGAAAATCTTCCAGGTCTCGCTGACGGAGCCGGCCGAGCCCAATTCCCGAGTCGTCTACTTGGAGATGACGGCGGCGGAGATTCTCAGCGAGGGCAAGCCGATGAGGCTCACGCGCGACCTCATGGAGTCGATCCTGATCGACCGTTTAATGGGTAGCTTCGCCGCCGCGGAGCCGCCGTTTCAGTACCTAGTCGGGTGTTACCGACGCGCCTACGACGAGGGTCGGAAAATCACCGTCATGAAAGATAAGAACTTGAGGGCGGATATGGAGTCGGTGATTAAGCAGGCGAAGAAGCTTTCGGTTTCGTATTGTAGGATCCATTTAGGGAACCCGGAGGCGTTTCCGGGTTCGGGTTCGGATCCGGCGACGGCGTCAAATGCGTCGCCGTTGCTGCCGTTGATTTTTTCCGAGGTGGGGAGCGGCTCGGTGGATGAGTTTGGAGGGAGTTCTAGTAGTAGTAGTAGTGGAGTTCAGTGCCCTCCTGGGTTTTTGGATGACTTCTTTAGGGACTCGGATTTCGATAGCTTGGACCCAATTTTGAAGGGTTTGTATGAGGAGCTTAGGGAGATTGTGCTTAAGGTTTCGGCATTGGGGAATTTCCAGCAGCCATTGAGGGCTCTGTTGTATTTGGTTAGCTTTCCTGCTGGGGCTAAGAGTCTGGTGAATCACCCTTGGTGGATTCCCAAAGGTGTTTACTTGAATGGGAGGGTTATCGAAAGGACTAGTATTTTGGGTCCTTTTTTTCATGTCAGTGCTTTGCCTGATCATCCTATTTTCAAGAGCCAACCGGATGTGGGGCAGCAGTGCTTTTCAGAAAATTCTAAGGATAGTGATCTGCGATCTTCGTACATCACAATAAAGACACATGTGAATAGTTTATATGACGGCCTCGCAGAAGTTCTCCTCAAACTATTAAAAAATGCAGAGACCCGTGAGAGTGTTCGTGAGTATCTTGCTGAGGTTATCAACAAAAACTCATCAAGGGCTCATATTCAGGTCGATCCTCTTTCTTGTGCAAGTTCTGGCATGTTTGTCAATCTCAGTGCTGTCATGCTTCGACTTTGCGAGCCATTTCTGGATCCAAATTTAACAAAAAGGGACAAAATTGATCCAAAATATGTATTCTATGGTGACCGGCTGGAGTTAAGGGGTTTGACTGCTCTACATGCATCATCTGAAGAAGTTACTGAATGGATTAACAAAGATAGTGGTGGTGATGGTCAAAATCGTCTTTCACAATCGCAAGAAGCCACCAGTTCTGGCAGTAATATCTCTCAACCTTCTAGCGTGAAGCCAAGTGGCGAAAAAACTACATATTCATTTATTTGTGAATGCTTCTTCATGACTGCGAGGGTGCTCAACCTGGGTTTATTGAAAGCACTTTCTGACTATAAGCATCTAGTACAGGACATGCAGAGGTCTGAAGATACACTTAAAGCCTTGAAAAGACAGGCACCTTCTCCTCAATTGAATATCGATATAGCTCGCCTTGAGAAAGAGTTAGAGTTGTATAAACAGGAAAAGCGCTGTCATGAAGCTCAAATACTCACGGATGAACCACTTTTAGAGCGTGCTCTTTCTTTCTACCGGTTGATGGTGGTGTGGCTAGTTCGCTTGGTTGGTGGATTTAAAATGCCTTTGCCGTCAACTTGCCCTGTGGAATTTGCATCTATGCCAGAACATTTTGTGGAAGATGCCATGGAGTTGCTTATATTCGCTTCCCGGATGCCAAAAGCATTTCATGGGATCTTGTTGGATGAATTTATGAACTTTATTATAATGTTCATGGCAAGTCCAGAATATATTAGGAACCCTTATCTAAGAGCAAAGATGGTTGAAGTCCTGAACTGCTTGATGCCCCGTCCAAGTCATCAATCACCTGCTGCTACAGCTGCTGCTGCTAGCCTGTTCGAAGGGCACCAACTGTCTCTCGAGTATCTTGTGAGGAATCTCTTGAAACTATATGTAGACATTGAGTTCACTGGTTCTCATACACAGTTCTATGACAAGTTCAACATCCGCCACAATATTGCTGAACTTCTTGAATATCTTTGGCAAGTCCCCAGTCATCGAAATGCTTGGAAACAGATTGCTAGGGAAGAAGAGAAAGGCGTATATTTGAATTTCTTAAACTTCTTGATCAATGATAGTATATATCTTCTGGATGAAAGTCTTAACAAGATTCTTGAACACAAAGAACTGGAGGCTGAGATGTCAAACACCGCAGAATGGGAGCGTAGACCGGCTCAAGAGAGGCAGGAGAGAACCCGCCTGTTCCACTCTCAAGAAAATATTATCCGAATTGATATGAAGTTAGCAAATGAAGATGTGAGTATGTTGGCATTTACTACAGAACAAATTACAGCTCCTTTCCTACTTCCTGAGATGGTTGAAAGGGTGGCAAGTATGCTCAATTATTTTTTGTTGCAATTAGTAGGTCCTCAAAGAAAATCTCTTAGTCTGAAAGACCCGGAGAAGTATGAGTTCCGCCCAAAGCAATTGCTTAAGCAGATTGTGTACATATATGTTAATCTGGCAAGAGGTGATACGGAAAATATCTTTCCAGCTGCTATCTCAAAGGATGGTCGATCTTACAATGAGCAGTTGTTCAGTGCTGCTGCAGATGTCCTAAGGAGAATTGGTGAAGATGGAAGGGTCATACAGGAGTTTGTTGAGCTTGGTTCCAAAGCCAAGGTTGCTGCTTCTGAGGCCATGGATGCTGAAGCTGTTCTTGGGGATATACCAGATGAATTCCTTGACCCAATTCAGTACACTTTAATGAAGGATCCAGTTATCTTACCTTCTTCAAGAATCACAGTAGACCGGCCTGTCATTCAAAGGCATCTTCTTAGTGATAATAGTGATCCATTCAACCGTTCCCATCTTACTGCGGACATGTTGATACCGGATAATGATTTGAAGGCAAAAATACAAGAGTTTATTAGGTCGCAACAGTCGAAGCGCGGGGAAAGCCTTAGCATGCAGAGTGATAAGGCAACAATACAAACCACATCTAGTGAAATGCTAATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

1030

Amino Acids

116.67

Weight (kDa)

5.53

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ufd2P_core	PF10408	263 - 916	4.2e-201	Ubiquitin elongating factor core
U-box	PF04564	933 - 1004	1.1e-29	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01790 AT3G01790 AT3G01790
fragaria_vesca	FvH4_6g53020
malus_domestica	MD17G1015300.v1.1
prunus_persica	Prupe.3G148400_v2.0.a1 Prupe.3G148400_v2.0.a1 Prupe.3G148400_v2.0.a1
pyrus_communis	pycom17g01250
rosa_chinensis	RchiOBHm_Chr2g0174761 RchiOBHm_Chr4g0409361
rosa_laevigata	RLG00000008566 RLG00000022293
rosa_multiflora	Rmu_sc0023882.1_g000001 Rmu_sc0041666.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077760 Rroxscaffold_5G00353880
rosa_rugosa	Rorug02G0579300 Rorug04G0093200
rosa_samantha	Rh2BG671600 Rh2CG634700 Rh2DG685000 Rh4AG155800 Rh4CG165000 Rh4DG148800
rosa_wichuraiana	Rw2G054130 Rw4G012750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1835
AarI	CACCTGC	1 cut(s)	1945
AasI	GACNNNNNNGTC	1 cut(s)	2885
Acc36I	ACCTGC	1 cut(s)	1945
AccB1I	GGYRCC	2 cut(s)	1510, 1974
AccBSI	CCGCTC	1 cut(s)	477
AccI	GTMKAC	5 cut(s)	5, 111, 2025, 2296, 2877
AccII	CGCG	5 cut(s)	169, 171, 224, 264, 3021
AccIII	TCCGGA	1 cut(s)	54
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	7 cut(s)	652, 874, 1141, 1718, 1817, 2179, 2807
AcuI	CTGAAG	3 cut(s)	1254, 1500, 2799
AcyI	GRCGYC	1 cut(s)	428
AfaI	GTAC	5 cut(s)	242, 905, 1461, 2576, 2828
AfeI	AGCGCT	1 cut(s)	1583
AfiI	CCNNNNNNNGG	6 cut(s)	205, 407, 471, 851, 1651, 2286
AflII	CTTAAG	2 cut(s)	632, 2561
AflIII	ACRYGT	2 cut(s)	922, 2952
AgeI	ACCGGT	1 cut(s)	1644
AhlI	ACTAGT	1 cut(s)	779
AjnI	CCWGG	3 cut(s)	66, 538, 1419
AjuI	GAANNNNNNNTTGG	2 cut(s)	2772, 2804
Alw21I	GWGCWC	2 cut(s)	1416, 1633
Alw26I	GTCTC	3 cut(s)	76, 977, 1989
AlwNI	CAGNNNCTG	1 cut(s)	1952
Ama87I	CYCGRG	2 cut(s)	102, 1988
Aor13HI	TCCGGA	1 cut(s)	54
Aor51HI	AGCGCT	1 cut(s)	1583
AoxI	GGCC	4 cut(s)	87, 943, 2766, 2882
ApoI	RAATTY	7 cut(s)	652, 874, 1141, 1718, 1817, 2179, 2807
ArsI	GACNNNNNNTTYG	4 cut(s)	557, 589, 769, 801
AsiGI	ACCGGT	1 cut(s)	1644
Asp700I	GAANNNNTTC	2 cut(s)	62, 2784
AspLEI	GCGC	4 cut(s)	171, 266, 1584, 3021
AspS9I	GGNCC	3 cut(s)	586, 791, 2495
AsuC2I	CCSGG	4 cut(s)	389, 402, 1780, 2528
AsuHPI	GGTGA	9 cut(s)	280, 343, 716, 730, 1199, 1283, 1926, 2612, 2711
AsuII	TTCGAA	1 cut(s)	1968
AsuNHI	GCTAGC	1 cut(s)	1958
AvaI	CYCGRG	2 cut(s)	102, 1988
AvaII	GGWCC	3 cut(s)	586, 791, 2495
AxyI	CCTNAGG	1 cut(s)	2687
BaeGI	GKGCMC	2 cut(s)	536, 1977
BamHI	GGATCC	4 cut(s)	372, 415, 1135, 2842
BanI	GGYRCC	2 cut(s)	1510, 1974
BanII	GRGCYC	3 cut(s)	96, 676, 1045
BarI	GAAGNNNNNNTAC	2 cut(s)	1584, 1616
Bbv12I	GWGCWC	2 cut(s)	1416, 1633
BbvCI	CCTCAGC	1 cut(s)	1014
BccI	CCATC	7 cut(s)	1268, 1645, 1882, 2437, 2633, 2699, 2946
BceAI	ACGGC	7 cut(s)	141, 217, 427, 436, 441, 958, 1684
BciT130I	CCWGG	3 cut(s)	68, 540, 1421
BclI	TGATCA	2 cut(s)	820, 2196
BcnI	CCSGG	4 cut(s)	389, 402, 1780, 2528
BcoDI	GTCTC	3 cut(s)	76, 977, 1989
BcuI	ACTAGT	1 cut(s)	779
BfaI	CTAG	9 cut(s)	245, 507, 780, 1341, 1457, 1664, 1959, 2151, 3072
BfmI	CTRYAG	3 cut(s)	1944, 2406, 2676
BfoI	RGCGCY	1 cut(s)	1585
BfrI	CTTAAG	2 cut(s)	632, 2561
BfuAI	ACCTGC	1 cut(s)	1945
BglI	GCCNNNNNGGC	1 cut(s)	160
Bme1390I	CCNGG	7 cut(s)	68, 389, 402, 540, 1421, 1780, 2528
Bme18I	GGWCC	3 cut(s)	586, 791, 2495
BmeT110I	CYCGRG	2 cut(s)	102, 1988
BmgT120I	GGNCC	3 cut(s)	586, 791, 2495
BmrFI	CCNGG	7 cut(s)	68, 389, 402, 540, 1421, 1780, 2528
BmrI	ACTGGG	1 cut(s)	2115
BmsI	GCATC	8 cut(s)	1235, 1462, 1733, 1741, 1773, 1902, 2764, 2908
BmtI	GCTAGC	1 cut(s)	1962
BmuI	ACTGGG	1 cut(s)	2115
BoxI	GACNNNNGTC	1 cut(s)	276
BpmI	CTGGAG	3 cut(s)	59, 1217, 2279
Bpu10I	CCTNAGC	3 cut(s)	617, 1014, 3032
Bpu14I	TTCGAA	1 cut(s)	1968
BpuEI	CTTGAG	4 cut(s)	331, 1568, 2289, 2325
BpuMI	CCSGG	4 cut(s)	389, 402, 1780, 2528
Bsa29I	ATCGAT	1 cut(s)	1533
BsaBI	GATNNNNATC	2 cut(s)	191, 888
BsaHI	GRCGYC	1 cut(s)	428
BsaI	GGTCTC	2 cut(s)	76, 977
BsaJI	CCNNGG	8 cut(s)	222, 465, 539, 728, 1420, 1755, 2748, 2769
BsaWI	WCCGGW	4 cut(s)	54, 844, 1644, 2962
BsaXI	ACNNNNNCTCC	6 cut(s)	218, 248, 493, 523, 2683, 2713
Bsc4I	CCNNNNNNNGG	6 cut(s)	205, 407, 471, 851, 1651, 2286
Bse118I	RCCGGY	5 cut(s)	85, 1191, 1644, 2299, 2880
Bse1I	ACTGG	5 cut(s)	1311, 2044, 2121, 2262, 2846
Bse21I	CCTNAGG	1 cut(s)	2687
Bse8I	GATNNNNATC	2 cut(s)	191, 888
BseAI	TCCGGA	1 cut(s)	54
BseBI	CCWGG	3 cut(s)	68, 540, 1421
BseCI	ATCGAT	1 cut(s)	1533
BseDI	CCNNGG	8 cut(s)	222, 465, 539, 728, 1420, 1755, 2748, 2769
BseJI	GATNNNNATC	2 cut(s)	191, 888
BseLI	CCNNNNNNNGG	6 cut(s)	205, 407, 471, 851, 1651, 2286
BseMII	CTCAG	6 cut(s)	154, 1005, 1111, 2256, 2430, 2754
BseNI	ACTGG	5 cut(s)	1311, 2044, 2121, 2262, 2846
BseRI	GAGGAG	3 cut(s)	626, 950, 1509
BseSI	GKGCMC	2 cut(s)	536, 1977
BseX3I	CGGCCG	1 cut(s)	87
BseYI	CCCAGC	1 cut(s)	701
Bsh1236I	CGCG	5 cut(s)	169, 171, 224, 264, 3021
Bsh1285I	CGRYCG	2 cut(s)	90, 199
BshFI	GGCC	4 cut(s)	89, 945, 2768, 2884
BshNI	GGYRCC	2 cut(s)	1510, 1974
BshTI	ACCGGT	1 cut(s)	1644
BshVI	ATCGAT	1 cut(s)	1533
BsiEI	CGRYCG	2 cut(s)	90, 199
BsiHKAI	GWGCWC	2 cut(s)	1416, 1633
BsiHKCI	CYCGRG	2 cut(s)	102, 1988
BslFI	GGGAC	3 cut(s)	578, 1169, 2102
BslI	CCNNNNNNNGG	6 cut(s)	205, 407, 471, 851, 1651, 2286
BsmAI	GTCTC	3 cut(s)	76, 977, 1989
BsmFI	GGGAC	3 cut(s)	578, 1169, 2102
BsmI	GAATGC	1 cut(s)	1394
BsnI	GGCC	4 cut(s)	89, 945, 2768, 2884
Bso31I	GGTCTC	2 cut(s)	76, 977
BsoBI	CYCGRG	2 cut(s)	102, 1988
Bsp119I	TTCGAA	1 cut(s)	1968
Bsp1286I	GDGCHC	7 cut(s)	96, 536, 676, 1045, 1416, 1633, 1977
Bsp13I	TCCGGA	1 cut(s)	54
Bsp1407I	TGTACA	1 cut(s)	2574
Bsp19I	CCATGG	2 cut(s)	1755, 2769
BspANI	GGCC	4 cut(s)	89, 945, 2768, 2884
BspCNI	CTCAG	6 cut(s)	153, 1006, 1110, 2257, 2431, 2755
BspDI	ATCGAT	1 cut(s)	1533
BspEI	TCCGGA	1 cut(s)	54
BspFNI	CGCG	5 cut(s)	169, 171, 224, 264, 3021
BspHI	TCATGA	3 cut(s)	294, 1398, 1588
BspMAI	CTGCAG	1 cut(s)	2680
BspMI	ACCTGC	1 cut(s)	1945
BspOI	GCTAGC	1 cut(s)	1962
BspQI	GCTCTTC	1 cut(s)	27
BspT104I	TTCGAA	1 cut(s)	1968
BspT107I	GGYRCC	2 cut(s)	1510, 1974
BspTI	CTTAAG	2 cut(s)	632, 2561
BspTNI	GGTCTC	2 cut(s)	76, 977
BsrBI	CCGCTC	1 cut(s)	477
BsrFI	RCCGGY	5 cut(s)	85, 1191, 1644, 2299, 2880
BsrGI	TGTACA	1 cut(s)	2574
BsrI	ACTGG	5 cut(s)	1311, 2044, 2121, 2262, 2846
BssAI	RCCGGY	5 cut(s)	85, 1191, 1644, 2299, 2880
BssECI	CCNNGG	8 cut(s)	222, 465, 539, 728, 1420, 1755, 2748, 2769
BssNI	GRCGYC	1 cut(s)	428
BssT1I	CCWWGG	4 cut(s)	728, 1755, 2748, 2769
Bst2UI	CCWGG	3 cut(s)	68, 540, 1421
Bst4CI	ACNGT	7 cut(s)	200, 292, 1983, 2055, 2875, 2933, 3012
Bst6I	CTCTTC	2 cut(s)	27, 2154
BstACI	GRCGYC	1 cut(s)	428
BstAFI	CTTAAG	2 cut(s)	632, 2561
BstAUI	TGTACA	1 cut(s)	2574
BstBI	TTCGAA	1 cut(s)	1968
BstC8I	GCNNGC	8 cut(s)	87, 152, 342, 1124, 1543, 1629, 1960, 3038
BstDSI	CCRYGG	3 cut(s)	222, 1755, 2769
BstEII	GGTNACC	1 cut(s)	1187
BstFNI	CGCG	5 cut(s)	169, 171, 224, 264, 3021
BstH2I	RGCGCY	1 cut(s)	1585
BstHHI	GCGC	4 cut(s)	171, 266, 1584, 3021
BstMAI	GTCTC	3 cut(s)	76, 977, 1989
BstMCI	CGRYCG	2 cut(s)	90, 199
BstNI	CCWGG	3 cut(s)	68, 540, 1421
BstNSI	RCATGY	6 cut(s)	926, 1087, 1226, 1471, 2956, 3040
BstPAI	GACNNNNGTC	1 cut(s)	276
BstPI	GGTNACC	1 cut(s)	1187
BstSCI	CCNGG	7 cut(s)	66, 387, 400, 538, 1419, 1778, 2526
BstSFI	CTRYAG	3 cut(s)	1944, 2406, 2676
BstSLI	GKGCMC	2 cut(s)	536, 1977
BstUI	CGCG	5 cut(s)	169, 171, 224, 264, 3021
BstX2I	RGATCY	5 cut(s)	372, 415, 1135, 1803, 2842
BstYI	RGATCY	5 cut(s)	372, 415, 1135, 1803, 2842
BstZI	CGGCCG	1 cut(s)	87
Bsu15I	ATCGAT	1 cut(s)	1533
Bsu36I	CCTNAGG	1 cut(s)	2687
BsuRI	GGCC	4 cut(s)	89, 945, 2768, 2884
BsuTUI	ATCGAT	1 cut(s)	1533
BtgI	CCRYGG	3 cut(s)	222, 1755, 2769
BtsI	GCAGTG	1 cut(s)	866
BtsIMutI	CAGTG	6 cut(s)	536, 814, 866, 1105, 2037, 2674
BveI	ACCTGC	1 cut(s)	1945
Cac8I	GCNNGC	8 cut(s)	87, 152, 342, 1124, 1543, 1629, 1960, 3038
CaiI	CAGNNNCTG	1 cut(s)	1952
CciI	TCATGA	3 cut(s)	294, 1398, 1588
CfoI	GCGC	4 cut(s)	171, 266, 1584, 3021
Cfr10I	RCCGGY	5 cut(s)	85, 1191, 1644, 2299, 2880
Cfr13I	GGNCC	3 cut(s)	586, 791, 2495
Cfr42I	CCGCGG	1 cut(s)	225
ClaI	ATCGAT	1 cut(s)	1533
CseI	GACGC	3 cut(s)	270, 417, 426
Csp6I	GTAC	5 cut(s)	241, 904, 1460, 2575, 2827
CspAI	ACCGGT	1 cut(s)	1644
CspCI	CAANNNNNGTGG	2 cut(s)	1246, 1281
CviQI	GTAC	5 cut(s)	241, 904, 1460, 2575, 2827
DraI	TTTAAA	1 cut(s)	1687
DrdI	GACNNNNNNGTC	1 cut(s)	2885
DseDI	GACNNNNNNGTC	1 cut(s)	2885
EaeI	YGGCCR	1 cut(s)	87
EagI	CGGCCG	1 cut(s)	87
Eam1104I	CTCTTC	2 cut(s)	27, 2154
EarI	CTCTTC	2 cut(s)	27, 2154
EciI	GGCGGA	4 cut(s)	146, 332, 2066, 2534
EclXI	CGGCCG	1 cut(s)	87
Eco130I	CCWWGG	4 cut(s)	728, 1755, 2748, 2769
Eco24I	GRGCYC	3 cut(s)	96, 676, 1045
Eco31I	GGTCTC	2 cut(s)	76, 977
Eco47I	GGWCC	3 cut(s)	586, 791, 2495
Eco47III	AGCGCT	1 cut(s)	1583
Eco52I	CGGCCG	1 cut(s)	87
Eco57I	CTGAAG	3 cut(s)	1254, 1500, 2799
Eco81I	CCTNAGG	1 cut(s)	2687
Eco88I	CYCGRG	2 cut(s)	102, 1988
Eco91I	GGTNACC	1 cut(s)	1187
EcoO109I	RGGNCCY	2 cut(s)	791, 2495
EcoO65I	GGTNACC	1 cut(s)	1187
EcoRI	GAATTC	1 cut(s)	2807
EcoRII	CCWGG	3 cut(s)	66, 538, 1419
EcoT14I	CCWWGG	4 cut(s)	728, 1755, 2748, 2769
EcoT22I	ATGCAT	1 cut(s)	1228
EcoT38I	GRGCYC	3 cut(s)	96, 676, 1045
ErhI	CCWWGG	4 cut(s)	728, 1755, 2748, 2769
FalI	AAGNNNNNCTT	4 cut(s)	1473, 1505, 2772, 2804
FaqI	GGGAC	3 cut(s)	578, 1169, 2102
FauI	CCCGC	2 cut(s)	2333, 3014
FbaI	TGATCA	2 cut(s)	820, 2196
FblI	GTMKAC	5 cut(s)	5, 111, 2025, 2296, 2877
FriOI	GRGCYC	3 cut(s)	96, 676, 1045
FspBI	CTAG	9 cut(s)	245, 507, 780, 1341, 1457, 1664, 1959, 2151, 3072
GlaI	GCGC	4 cut(s)	170, 265, 1583, 3020
GsaI	CCCAGC	1 cut(s)	705
GsuI	CTGGAG	3 cut(s)	59, 1217, 2279
HaeII	RGCGCY	1 cut(s)	1585
HaeIII	GGCC	4 cut(s)	89, 945, 2768, 2884
HgaI	GACGC	3 cut(s)	270, 417, 426
HhaI	GCGC	4 cut(s)	171, 266, 1584, 3021
Hin1I	GRCGYC	1 cut(s)	428
Hin6I	GCGC	4 cut(s)	169, 264, 1582, 3019
HinP1I	GCGC	4 cut(s)	169, 264, 1582, 3019
HincII	GTYRAC	2 cut(s)	6, 1704
HindII	GTYRAC	2 cut(s)	6, 1704
HindIII	AAGCTT	1 cut(s)	350
HphI	GGTGA	9 cut(s)	280, 343, 716, 730, 1199, 1283, 1926, 2612, 2711
Hpy99I	CGWCG	4 cut(s)	264, 275, 427, 442
HpyAV	CCTTC	8 cut(s)	592, 1347, 1524, 1964, 2703, 2833, 2868, 2971
HpyCH4III	ACNGT	7 cut(s)	200, 292, 1983, 2055, 2875, 2933, 3012
HpyCH4V	TGCA	8 cut(s)	980, 1073, 1226, 1471, 1724, 2485, 2678, 3040
Hsp92I	GRCGYC	1 cut(s)	428
HspAI	GCGC	4 cut(s)	169, 264, 1582, 3019
Kpn2I	TCCGGA	1 cut(s)	54
KroI	GCCGGC	1 cut(s)	85
KroNI	GCCGGC	1 cut(s)	87
Ksp22I	TGATCA	2 cut(s)	820, 2196
KspI	CCGCGG	1 cut(s)	225
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	6 cut(s)	82, 226, 474, 613, 2290, 2428
LweI	GCATC	8 cut(s)	1235, 1462, 1733, 1741, 1773, 1902, 2764, 2908
MaeI	CTAG	9 cut(s)	245, 507, 780, 1341, 1457, 1664, 1959, 2151, 3072
MaeIII	GTNAC	3 cut(s)	254, 1187, 1240
MbiI	CCGCTC	1 cut(s)	477
MfeI	CAATTG	2 cut(s)	1523, 2555
MflI	RGATCY	5 cut(s)	372, 415, 1135, 1803, 2842
MhlI	GDGCHC	7 cut(s)	96, 536, 676, 1045, 1416, 1633, 1977
MlyI	GAGTC	5 cut(s)	114, 191, 335, 560, 721
MmeI	TCCRAC	2 cut(s)	260, 1791
Mph1103I	ATGCAT	1 cut(s)	1228
MroI	TCCGGA	1 cut(s)	54
MroNI	GCCGGC	1 cut(s)	85
MroXI	GAANNNNTTC	2 cut(s)	62, 2784
MslI	CAYNNNNRTG	4 cut(s)	293, 807, 2130, 2834
MspA1I	CMGCKG	3 cut(s)	224, 1949, 2624
MspCI	CTTAAG	2 cut(s)	632, 2561
MspR9I	CCNGG	7 cut(s)	68, 389, 402, 540, 1421, 1780, 2528
MunI	CAATTG	2 cut(s)	1523, 2555
Mva1269I	GAATGC	1 cut(s)	1394
MvaI	CCWGG	3 cut(s)	68, 540, 1421
MvnI	CGCG	5 cut(s)	169, 171, 224, 264, 3021
NaeI	GCCGGC	1 cut(s)	87
NciI	CCSGG	4 cut(s)	389, 402, 1780, 2528
NcoI	CCATGG	2 cut(s)	1755, 2769
NgoMIV	GCCGGC	1 cut(s)	85
NheI	GCTAGC	1 cut(s)	1958
NmeAIII	GCCGAG	1 cut(s)	115
NmuCI	GTSAC	1 cut(s)	1187
NsiI	ATGCAT	1 cut(s)	1228
NspI	RCATGY	6 cut(s)	926, 1087, 1226, 1471, 2956, 3040
NspV	TTCGAA	1 cut(s)	1968
PaeI	GCATGC	1 cut(s)	3040
PaeR7I	CTCGAG	1 cut(s)	1988
PagI	TCATGA	3 cut(s)	294, 1398, 1588
PaqCI	CACCTGC	1 cut(s)	1945
PciI	ACATGT	2 cut(s)	922, 2952
PciSI	GCTCTTC	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	2 cut(s)	419, 3011
PctI	GAATGC	1 cut(s)	1394
PdiI	GCCGGC	1 cut(s)	87
PdmI	GAANNNNTTC	2 cut(s)	62, 2784
PfeI	GAWTC	6 cut(s)	136, 721, 736, 2005, 2239, 2868
PflFI	GACNNNGTC	1 cut(s)	427
PfoI	TCCNGGA	1 cut(s)	1778
PinAI	ACCGGT	1 cut(s)	1644
PleI	GAGTC	5 cut(s)	113, 190, 334, 560, 720
PpsI	GAGTC	5 cut(s)	113, 190, 334, 560, 720
PpuMI	RGGWCCY	2 cut(s)	791, 2495
PscI	ACATGT	2 cut(s)	922, 2952
PshAI	GACNNNNGTC	1 cut(s)	276
PsiI	TTATAA	1 cut(s)	1835
Psp5II	RGGWCCY	2 cut(s)	791, 2495
Psp6I	CCWGG	3 cut(s)	66, 538, 1419
PspEI	GGTNACC	1 cut(s)	1187
PspFI	CCCAGC	1 cut(s)	701
PspGI	CCWGG	3 cut(s)	66, 538, 1419
PspPI	GGNCC	3 cut(s)	586, 791, 2495
PspPPI	RGGWCCY	2 cut(s)	791, 2495
PstI	CTGCAG	1 cut(s)	2680
PstNI	CAGNNNCTG	1 cut(s)	1952
PsuI	RGATCY	5 cut(s)	372, 415, 1135, 1803, 2842
PsyI	GACNNNGTC	1 cut(s)	427
PvuII	CAGCTG	2 cut(s)	1949, 2624
RsaI	GTAC	5 cut(s)	242, 905, 1461, 2576, 2828
RsaNI	GTAC	5 cut(s)	241, 904, 1460, 2575, 2827
RseI	CAYNNNNRTG	4 cut(s)	293, 807, 2130, 2834
SacII	CCGCGG	1 cut(s)	225
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	27
Sau96I	GGNCC	3 cut(s)	586, 791, 2495
SchI	GAGTC	5 cut(s)	114, 191, 335, 560, 721
ScrFI	CCNGG	7 cut(s)	68, 389, 402, 540, 1421, 1780, 2528
SduI	GDGCHC	7 cut(s)	96, 536, 676, 1045, 1416, 1633, 1977
SfaNI	GCATC	8 cut(s)	1235, 1462, 1733, 1741, 1773, 1902, 2764, 2908
SfcI	CTRYAG	3 cut(s)	1944, 2406, 2676
Sfr274I	CTCGAG	1 cut(s)	1988
Sfr303I	CCGCGG	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	1968
SgrBI	CCGCGG	1 cut(s)	225
SinI	GGWCC	3 cut(s)	586, 791, 2495
SlaI	CTCGAG	1 cut(s)	1988
SmiMI	CAYNNNNRTG	4 cut(s)	293, 807, 2130, 2834
SmlI	CTYRAG	7 cut(s)	310, 632, 1547, 1988, 2304, 2340, 2561
SmoI	CTYRAG	7 cut(s)	310, 632, 1547, 1988, 2304, 2340, 2561
SpeI	ACTAGT	1 cut(s)	779
SphI	GCATGC	1 cut(s)	3040
SspI	AATATT	2 cut(s)	2086, 2350
SspMI	CTAG	9 cut(s)	245, 507, 780, 1341, 1457, 1664, 1959, 2151, 3072
StyD4I	CCNGG	7 cut(s)	66, 387, 400, 538, 1419, 1778, 2526
StyI	CCWWGG	4 cut(s)	728, 1755, 2748, 2769
TaaI	ACNGT	7 cut(s)	200, 292, 1983, 2055, 2875, 2933, 3012
TatI	WGTACW	3 cut(s)	1459, 2574, 2826
TauI	GCSGC	5 cut(s)	131, 221, 224, 232, 480
TfiI	GAWTC	6 cut(s)	136, 721, 736, 2005, 2239, 2868
TscAI	CASTG	6 cut(s)	536, 814, 866, 1105, 2044, 2674
TseFI	GTSAC	1 cut(s)	1187
Tsp45I	GTSAC	1 cut(s)	1187
TspGWI	ACGGA	3 cut(s)	95, 1622, 2621
TspRI	CASTG	6 cut(s)	536, 814, 866, 1105, 2044, 2674
Tth111I	GACNNNGTC	1 cut(s)	427
Vha464I	CTTAAG	2 cut(s)	632, 2561
VpaK11BI	GGWCC	3 cut(s)	586, 791, 2495
XapI	RAATTY	7 cut(s)	652, 874, 1141, 1718, 1817, 2179, 2807
XceI	RCATGY	6 cut(s)	926, 1087, 1226, 1471, 2956, 3040
XhoI	CTCGAG	1 cut(s)	1988
XmiI	GTMKAC	5 cut(s)	5, 111, 2025, 2296, 2877
XmnI	GAANNNNTTC	2 cut(s)	62, 2784
XspI	CTAG	9 cut(s)	245, 507, 780, 1341, 1457, 1664, 1959, 2151, 3072
Zsp2I	ATGCAT	1 cut(s)	1228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.