RchiOBHm_Chr2g0174761

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006270
Physical Location & Seq
Reverse (-)
87246693 .. 87249007
2315 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54190

Sequence Viewer

Length: 612 bp
ATGGCAACCCAAGCAGCTGCAACTTTTAACGGCAATTTGAAGAAAGCTGTTGCCGGCCTGAGACGGATTAATCTTGATGGGCTGCGGTGGAAAGTGTTTGATGCCAAGGGCCAGGTTCTTGGAAGGCTAGCTTCTCAAATATCTACTGTTATTCAAGGCAAGGATAAACCGACGTATGCTCCAAATCGAGATGATGGAGATATGTGCATTGTGCTGAATGCGAAGGATATTTGTGTCACAGGGAGAAAACTAACCGATAAAGTTTATCATTGGCATACCGGGTATGTTGGGCACCTCAAGGAAAGGACTTTGAAGGATCAGATGGTGAAAGACCCTACAGAAGTCATTCGCAAAGCTGTATTGCGCATGCTTCCTAAGAACAAATTGCGTGACGATAGAGATAGAAAGCTGAGAATTTTTGCTGGCGGTGAACACCCATTTGGTGATAGGCCCCTTGAACCATATCTGATGCCCCCGCGAAAAGTAAGGGAAATGCGACCCCGTACAAGACGAGCCTTGGTCAGAGCTCAGATAAAGGCTGAACAGCAACAACAGGATATTAATGATCCACGGAAGGGCAGGAAGAAGGATAGAGTCGAAGTGAGCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L13

Protein Analysis

203

Amino Acids

23.29

Weight (kDa)

10.37

Isoelectric Point (pI)

28.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L13 PF00572 29 - 146 3.9e-44 Ribosomal protein L13
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 291
AccII CGCG 1 cut(s) 478
AciI CCGC 3 cut(s) 85, 426, 476
AclWI GGATC 2 cut(s) 324, 560
AcsI RAATTY 1 cut(s) 414
AfaI GTAC 1 cut(s) 505
AfiI CCNNNNNNNGG 1 cut(s) 575
AgsI TTSAA 4 cut(s) 40, 155, 313, 458
AjnI CCWGG 1 cut(s) 111
AjuI GAANNNNNNNTTGG 2 cut(s) 423, 455
AluBI AGCT 6 cut(s) 17, 47, 131, 356, 409, 527
AluI AGCT 6 cut(s) 17, 47, 131, 356, 409, 527
Alw21I GWGCWC 1 cut(s) 529
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 2 cut(s) 324, 560
AoxI GGCC 3 cut(s) 55, 109, 449
ApeKI GCWGC 3 cut(s) 14, 17, 82
ApoI RAATTY 1 cut(s) 414
AseI ATTAAT 2 cut(s) 69, 561
Asp700I GAANNNNTTC 1 cut(s) 345
AspLEI GCGC 1 cut(s) 366
AspS9I GGNCC 2 cut(s) 109, 450
AsuC2I CCSGG 1 cut(s) 280
AsuHPI GGTGA 3 cut(s) 337, 440, 455
AsuNHI GCTAGC 1 cut(s) 127
BaeGI GKGCMC 1 cut(s) 294
BanI GGYRCC 1 cut(s) 291
BanII GRGCYC 1 cut(s) 529
Bbv12I GWGCWC 1 cut(s) 529
BbvI GCAGC 3 cut(s) 4, 26, 69
BccI CCATC 3 cut(s) 71, 188, 316
BceAI ACGGC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 113
BcnI CCSGG 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 336
BisI GCNGC 3 cut(s) 15, 18, 83
BlsI GCNGC 3 cut(s) 16, 19, 84
Bme1390I CCNGG 2 cut(s) 113, 280
BmgT120I GGNCC 2 cut(s) 109, 450
BmiI GGNNCC 2 cut(s) 293, 452
BmrFI CCNGG 2 cut(s) 113, 280
BmsI GCATC 2 cut(s) 91, 459
BmtI GCTAGC 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 280
BsaJI CCNNGG 3 cut(s) 105, 516, 569
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 1 cut(s) 575
Bse118I RCCGGY 1 cut(s) 53
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 3 cut(s) 105, 516, 569
BseLI CCNNNNNNNGG 1 cut(s) 575
BseMII CTCAG 3 cut(s) 50, 401, 542
BseSI GKGCMC 1 cut(s) 294
BseXI GCAGC 3 cut(s) 4, 26, 69
Bsh1236I CGCG 1 cut(s) 478
BshFI GGCC 3 cut(s) 57, 111, 451
BshNI GGYRCC 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 529
BsiSI CCGG 2 cut(s) 54, 279
BslI CCNNNNNNNGG 1 cut(s) 575
BsmAI GTCTC 1 cut(s) 55
BsmBI CGTCTC 1 cut(s) 55
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 3 cut(s) 57, 111, 451
Bsp1286I GDGCHC 2 cut(s) 294, 529
Bsp143I GATC 2 cut(s) 316, 565
BspACI CCGC 3 cut(s) 85, 426, 476
BspANI GGCC 3 cut(s) 57, 111, 451
BspCNI CTCAG 3 cut(s) 51, 402, 541
BspFNI CGCG 1 cut(s) 478
BspLI GGNNCC 2 cut(s) 293, 452
BspOI GCTAGC 1 cut(s) 131
BspPI GGATC 2 cut(s) 324, 560
BspT107I GGYRCC 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 3 cut(s) 105, 516, 569
BssMI GATC 2 cut(s) 316, 565
BssT1I CCWWGG 2 cut(s) 105, 516
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 148
BstC8I GCNNGC 4 cut(s) 55, 129, 368, 424
BstDEI CTNAG 4 cut(s) 59, 375, 410, 528
BstDSI CCRYGG 1 cut(s) 569
BstFNI CGCG 1 cut(s) 478
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 2 cut(s) 319, 568
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 2 cut(s) 316, 565
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 370
BstSCI CCNGG 2 cut(s) 111, 278
BstSFI CTRYAG 1 cut(s) 336
BstSLI GKGCMC 1 cut(s) 294
BstUI CGCG 1 cut(s) 478
BstV1I GCAGC 3 cut(s) 4, 26, 69
BstXI CCANNNNNNTGG 1 cut(s) 119
BsuRI GGCC 3 cut(s) 57, 111, 451
BtgI CCRYGG 1 cut(s) 569
Cac8I GCNNGC 4 cut(s) 55, 129, 368, 424
CfoI GCGC 1 cut(s) 366
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 109, 450
Csp6I GTAC 1 cut(s) 504
CviAII CATG 1 cut(s) 367
CviQI GTAC 1 cut(s) 504
DdeI CTNAG 4 cut(s) 59, 375, 410, 528
DpnI GATC 2 cut(s) 318, 567
DpnII GATC 2 cut(s) 316, 565
Ecl136II GAGCTC 1 cut(s) 527
Eco130I CCWWGG 2 cut(s) 105, 516
Eco24I GRGCYC 1 cut(s) 529
Eco53kI GAGCTC 1 cut(s) 527
EcoICRI GAGCTC 1 cut(s) 527
EcoO109I RGGNCCY 1 cut(s) 450
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 2 cut(s) 105, 516
EcoT38I GRGCYC 1 cut(s) 529
ErhI CCWWGG 2 cut(s) 105, 516
Esp3I CGTCTC 1 cut(s) 55
FaeI CATG 1 cut(s) 370
FaiI YATR 7 cut(s) 177, 203, 276, 285, 368, 463, 610
FalI AAGNNNNNCTT 2 cut(s) 115, 147
FatI CATG 1 cut(s) 366
FauI CCCGC 1 cut(s) 483
Fnu4HI GCNGC 3 cut(s) 15, 18, 83
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 3 cut(s) 15, 18, 83
FspBI CTAG 1 cut(s) 128
FspI TGCGCA 1 cut(s) 365
GlaI GCGC 1 cut(s) 365
GluI GCNGC 3 cut(s) 15, 18, 83
HaeIII GGCC 3 cut(s) 57, 111, 451
HapII CCGG 2 cut(s) 54, 279
HhaI GCGC 1 cut(s) 366
Hin1II CATG 1 cut(s) 370
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HinfI GANTC 1 cut(s) 594
HpaII CCGG 2 cut(s) 54, 279
HphI GGTGA 3 cut(s) 337, 440, 455
Hpy166II GTNNAC 1 cut(s) 431
Hpy188I TCNGA 4 cut(s) 321, 468, 524, 531
Hpy188III TCNNGA 2 cut(s) 74, 188
Hpy8I GTNNAC 1 cut(s) 431
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 5 cut(s) 117, 217, 307, 568, 580
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 2 cut(s) 20, 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 4 cut(s) 59, 375, 410, 528
HpySE526I ACGT 1 cut(s) 173
Hsp92II CATG 1 cut(s) 370
HspAI GCGC 1 cut(s) 364
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Kzo9I GATC 2 cut(s) 316, 565
LmnI GCTCC 1 cut(s) 184
LpnPI CCDG 9 cut(s) 67, 71, 98, 125, 225, 292, 408, 539, 565
Lsp1109I GCAGC 3 cut(s) 4, 26, 69
LweI GCATC 2 cut(s) 91, 459
MaeI CTAG 1 cut(s) 128
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 2 cut(s) 235, 389
MalI GATC 2 cut(s) 318, 567
MboI GATC 2 cut(s) 316, 565
MboII GAAGA 2 cut(s) 52, 595
MhlI GDGCHC 2 cut(s) 294, 529
MluCI AATT 3 cut(s) 34, 383, 414
MlyI GAGTC 1 cut(s) 603
MnlI CCTC 1 cut(s) 305
MroNI GCCGGC 1 cut(s) 53
MroXI GAANNNNTTC 1 cut(s) 345
MseI TTAA 3 cut(s) 27, 69, 561
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 2 cut(s) 54, 279
MspR9I CCNGG 2 cut(s) 113, 280
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 478
MwoI GCNNNNNNNGC 1 cut(s) 11
NaeI GCCGGC 1 cut(s) 55
NciI CCSGG 1 cut(s) 280
NdeII GATC 2 cut(s) 316, 565
NgoMIV GCCGGC 1 cut(s) 53
NheI GCTAGC 1 cut(s) 127
NlaIII CATG 1 cut(s) 370
NlaIV GGNNCC 2 cut(s) 293, 452
NmuCI GTSAC 2 cut(s) 235, 389
NsbI TGCGCA 1 cut(s) 365
NspI RCATGY 1 cut(s) 370
PaeI GCATGC 1 cut(s) 370
PcsI WCGNNNNNNNCGW 1 cut(s) 603
PctI GAATGC 1 cut(s) 223
PdiI GCCGGC 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 345
PkrI GCNGC 3 cut(s) 16, 19, 84
PleI GAGTC 1 cut(s) 602
PpsI GAGTC 1 cut(s) 602
PshBI ATTAAT 2 cut(s) 69, 561
Psp124BI GAGCTC 1 cut(s) 529
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 293, 452
PspPI GGNCC 2 cut(s) 109, 450
PvuII CAGCTG 1 cut(s) 17
RsaI GTAC 1 cut(s) 505
RsaNI GTAC 1 cut(s) 504
SacI GAGCTC 1 cut(s) 529
SaqAI TTAA 3 cut(s) 27, 69, 561
SatI GCNGC 3 cut(s) 15, 18, 83
Sau3AI GATC 2 cut(s) 316, 565
Sau96I GGNCC 2 cut(s) 109, 450
SchI GAGTC 1 cut(s) 603
ScrFI CCNGG 2 cut(s) 113, 280
SduI GDGCHC 2 cut(s) 294, 529
SetI ASST 9 cut(s) 19, 49, 117, 133, 176, 297, 358, 411, 529
SfaNI GCATC 2 cut(s) 91, 459
SfcI CTRYAG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SphI GCATGC 1 cut(s) 370
Sse9I AATT 3 cut(s) 34, 383, 414
SsiI CCGC 3 cut(s) 85, 426, 476
SspMI CTAG 1 cut(s) 128
SstI GAGCTC 1 cut(s) 529
StyD4I CCNGG 2 cut(s) 111, 278
StyI CCWWGG 2 cut(s) 105, 516
TaaI ACNGT 1 cut(s) 148
TaiI ACGT 1 cut(s) 176
TaqI TCGA 2 cut(s) 187, 597
TasI AATT 3 cut(s) 34, 383, 414
Tru1I TTAA 3 cut(s) 27, 69, 561
Tru9I TTAA 3 cut(s) 27, 69, 561
TseFI GTSAC 2 cut(s) 235, 389
TseI GCWGC 3 cut(s) 14, 17, 82
Tsp45I GTSAC 2 cut(s) 235, 389
TspGWI ACGGA 2 cut(s) 79, 586
VspI ATTAAT 2 cut(s) 69, 561
XapI RAATTY 1 cut(s) 414
XceI RCATGY 1 cut(s) 370
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.